Wall clock time and date at job start Mon Mar 30 2020 20:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.09000 * 109.79039 * 55.49821 * 3 2 1 5 5 C 1.52895 * 109.63111 * 175.98569 * 3 2 1 6 6 C 1.50720 * 109.96414 * 170.08953 * 5 3 2 7 7 C 1.38685 * 118.49238 * 163.12320 * 6 5 3 8 8 C 1.38031 * 120.34834 * 179.83930 * 7 6 5 9 9 C 1.38269 * 119.82481 * 359.97438 * 8 7 6 10 10 C 1.38002 * 119.86982 * 0.07325 * 9 8 7 11 11 C 1.37830 * 121.65946 * 343.11158 * 6 5 3 12 12 C 1.50622 * 121.84726 * 0.44668 * 11 6 5 13 13 N 1.46630 * 110.49505 * 342.45214 * 12 11 6 14 14 C 1.46898 * 111.00369 * 289.12206 * 13 12 11 15 15 C 1.53006 * 109.47006 * 292.98061 * 14 13 12 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47242 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99967 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00542 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99408 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46854 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 119.99859 * 21 19 17 24 24 H 1.48498 * 109.46692 * 239.99831 * 21 19 17 25 25 H 1.09002 * 109.46687 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46915 * 299.99402 * 1 2 3 27 27 H 1.08999 * 109.47051 * 59.99856 * 1 2 3 28 28 H 1.08994 * 109.47207 * 240.00188 * 2 1 3 29 29 H 1.08999 * 109.47051 * 120.00144 * 2 1 3 30 30 H 1.09002 * 109.38875 * 290.23788 * 5 3 2 31 31 H 1.08998 * 109.39037 * 50.03790 * 5 3 2 32 32 H 1.07996 * 119.82282 * 359.82213 * 7 6 5 33 33 H 1.07994 * 120.08792 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.06072 * 180.02562 * 9 8 7 35 35 H 1.08004 * 119.81126 * 179.97438 * 10 9 8 36 36 H 1.09009 * 109.31306 * 222.12906 * 12 11 6 37 37 H 1.09004 * 109.28136 * 102.75763 * 12 11 6 38 38 H 1.09001 * 109.47062 * 172.98315 * 14 13 12 39 39 H 1.08993 * 109.47084 * 52.97762 * 14 13 12 40 40 H 1.09001 * 109.46801 * 300.00064 * 15 14 13 41 41 H 1.09001 * 109.46998 * 59.99660 * 15 14 13 42 42 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 43 43 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 44 44 H 0.96999 * 119.99910 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6153 1.9841 0.8452 5 6 3.5656 1.4480 0.1008 6 6 4.0923 2.8392 -0.1413 7 6 5.3906 3.1323 0.2486 8 6 5.9130 4.3931 0.0422 9 6 5.1380 5.3690 -0.5569 10 6 3.8457 5.0786 -0.9444 11 6 3.3182 3.8127 -0.7353 12 6 1.9000 3.5465 -1.1674 13 7 1.6526 2.1040 -1.2562 14 6 2.3625 1.5174 -2.4007 15 6 1.7593 2.0497 -3.7022 16 6 2.4991 1.4393 -4.8942 17 6 1.9055 1.9640 -6.1761 18 1 1.0830 2.6633 -6.1438 19 6 2.4122 1.5514 -7.3902 20 7 3.4140 0.7003 -7.4295 21 14 1.6767 2.2024 -8.9792 22 1 0.5690 3.1398 -8.6642 23 1 2.7241 2.9152 -9.7538 24 1 1.1521 1.0690 -9.7825 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8637 1.1162 1.0954 31 1 3.9801 0.7707 -0.6459 32 1 5.9959 2.3700 0.7164 33 1 6.9243 4.6169 0.3478 34 1 5.5430 6.3567 -0.7207 35 1 3.2410 5.8417 -1.4119 36 1 1.7288 4.0022 -2.1428 37 1 1.2145 3.9858 -0.4426 38 1 2.2642 0.4323 -2.3718 39 1 3.4171 1.7883 -2.3516 40 1 0.7046 1.7789 -3.7512 41 1 1.8575 3.1349 -3.7310 42 1 3.5537 1.7105 -4.8449 43 1 2.4012 0.3541 -4.8656 44 1 3.7708 0.4103 -8.2836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185797044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:10 Heat of formation + Delta-G solvation = 4.861338 kcal Electronic energy + Delta-G solvation = -21370.511378 eV Core-core repulsion = 18479.392986 eV Total energy + Delta-G solvation = -2891.118392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54030 -37.67771 -34.32761 -33.26092 -32.24190 -31.67191 -30.10768 -28.56031 -26.84549 -24.53482 -23.91219 -22.64666 -22.13705 -20.93337 -20.25949 -18.50230 -16.50250 -16.20187 -15.89238 -15.41325 -15.15452 -14.66694 -14.46875 -14.12960 -13.73400 -13.44489 -13.24437 -13.07759 -12.94229 -12.31754 -12.25413 -11.83149 -11.74819 -11.46636 -11.39299 -11.25148 -11.06013 -11.01800 -10.76732 -10.72588 -10.55632 -10.42643 -10.16790 -9.53798 -9.27780 -8.99707 -8.70214 -8.47316 -8.30197 -8.01332 -5.95700 -3.97351 1.41432 1.43258 3.33617 3.40887 3.45426 3.79560 4.15650 4.50377 4.61727 4.87079 4.92466 4.98634 5.09880 5.16989 5.28837 5.39816 5.41277 5.44839 5.48209 5.63153 5.69974 5.75228 5.79077 5.85883 5.94645 6.05456 6.06230 6.08935 6.14174 6.19770 6.27514 6.47268 6.48303 6.53466 6.55239 6.67472 6.78498 6.86586 7.07038 7.18611 7.39904 7.45828 7.73892 7.89537 8.05448 8.48960 9.10211 9.66450 11.15893 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.005026 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.175971 B = 5570.028317 C = 6681.033763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.083 3.917 4 H 0.079 0.921 5 C -0.114 4.114 6 C -0.075 4.075 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.113 4.113 11 C -0.103 4.103 12 C 0.086 3.914 13 N -0.518 5.518 14 C 0.048 3.952 15 C -0.103 4.103 16 C 0.023 3.977 17 C -0.515 4.515 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.012 0.988 43 H 0.014 0.986 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 4.107 18.808 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.026 4.026 4 H 0.097 0.903 5 C -0.153 4.153 6 C -0.075 4.075 7 C -0.139 4.139 8 C -0.143 4.143 9 C -0.142 4.142 10 C -0.131 4.131 11 C -0.105 4.105 12 C -0.042 4.042 13 N -0.239 5.239 14 C -0.079 4.079 15 C -0.141 4.141 16 C -0.015 4.015 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.140 3.919 18.606 19.015 hybrid contribution 0.855 0.509 -0.861 1.315 sum 0.995 4.427 17.746 18.317 Atomic orbital electron populations 1.21636 0.95109 1.00764 1.02471 1.21565 0.96984 0.94934 1.01804 1.21769 0.91818 0.95850 0.93141 0.90269 1.21187 0.97950 0.93721 1.02413 1.19554 0.94097 0.95368 0.98483 1.21051 0.95012 0.96842 1.00962 1.21029 0.99588 0.93621 1.00062 1.21054 0.94526 0.99280 0.99362 1.21095 0.95743 0.96347 0.99944 1.20471 0.98057 0.93654 0.98312 1.21225 0.90375 0.90198 1.02421 1.62704 1.56461 1.01973 1.02738 1.22390 0.95795 0.99311 0.90357 1.21637 1.00050 0.99335 0.93063 1.19056 0.95282 0.95962 0.91196 1.21290 1.16952 1.26100 0.91036 0.92675 1.25026 0.95097 0.95212 0.99195 1.69981 1.25382 1.32913 1.25384 0.86562 0.79125 0.78782 0.83709 1.19725 1.21090 1.21040 0.93581 0.93548 0.91092 0.91351 0.92175 0.90731 0.89997 0.86472 0.86407 0.86317 0.86057 0.88677 0.89963 0.91045 0.94726 0.92711 0.93626 0.96951 0.96718 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.80 37.16 0.36 -1.26 16 2 C -0.12 -1.33 5.36 -26.73 -0.14 -1.48 16 3 C 0.08 1.03 2.19 -67.62 -0.15 0.89 16 4 H 0.08 0.94 8.05 -51.93 -0.42 0.53 16 5 C -0.11 -1.42 4.48 -27.93 -0.13 -1.54 16 6 C -0.07 -1.03 5.05 -104.60 -0.53 -1.56 16 7 C -0.12 -1.53 9.66 -39.49 -0.38 -1.91 16 8 C -0.12 -1.50 10.05 -39.65 -0.40 -1.90 16 9 C -0.12 -1.52 10.05 -39.66 -0.40 -1.92 16 10 C -0.11 -1.49 9.65 -39.49 -0.38 -1.87 16 11 C -0.10 -1.46 5.19 -104.63 -0.54 -2.00 16 12 C 0.09 1.20 5.43 -5.16 -0.03 1.18 16 13 N -0.52 -7.61 4.22 -228.21 -0.96 -8.57 16 14 C 0.05 0.85 3.81 -3.82 -0.01 0.84 16 15 C -0.10 -2.17 5.12 -26.73 -0.14 -2.31 16 16 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 17 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 18 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.94 7.76 -51.93 -0.40 0.54 16 28 H 0.07 0.88 6.25 -51.93 -0.32 0.56 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.10 7.03 -51.93 -0.37 0.74 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.10 1.43 6.09 -51.92 -0.32 1.11 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.26 6.10 -51.93 -0.32 0.95 16 39 H 0.03 0.65 5.91 -51.93 -0.31 0.35 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.95 6.39 -51.93 -0.33 0.62 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -30.77 340.73 -10.92 -41.70 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.40 Total: -0.47 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -3.41 Total: -28.06 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.23 Total: -35.29 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.77 -10.92 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185797044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.557 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds