Wall clock time and date at job start Mon Mar 30 2020 20:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09005 * 109.46617 * 2 1 4 4 C 1.52995 * 109.46935 * 240.00158 * 2 1 3 5 5 C 1.52998 * 109.47041 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47422 * 59.99792 * 5 4 2 7 7 H 1.09004 * 109.47121 * 59.99936 * 6 5 4 8 8 N 1.46493 * 109.47521 * 180.02562 * 6 5 4 9 9 C 1.38853 * 120.00320 * 275.00229 * 8 6 5 10 10 C 1.39566 * 119.84671 * 179.97438 * 9 8 6 11 11 C 1.36338 * 120.16539 * 179.97438 * 10 9 8 12 12 C 1.40888 * 119.83438 * 0.02562 * 11 10 9 13 13 C 1.41140 * 120.15569 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99829 * 335.49865 * 13 12 11 15 15 C 1.39870 * 119.99894 * 155.49794 * 13 12 11 16 16 N 1.30899 * 119.99838 * 342.19021 * 15 13 12 17 17 Si 1.86796 * 119.99697 * 162.19144 * 15 13 12 18 18 H 1.48498 * 109.46994 * 180.02562 * 17 15 13 19 19 H 1.48507 * 109.47121 * 299.99928 * 17 15 13 20 20 H 1.48497 * 109.47374 * 59.99761 * 17 15 13 21 21 C 1.40882 * 119.68971 * 0.25174 * 12 11 10 22 22 C 1.36348 * 119.83610 * 359.46459 * 21 12 11 23 23 C 1.53002 * 109.47000 * 300.00297 * 6 5 4 24 24 C 1.52992 * 109.46965 * 120.00118 * 2 1 3 25 25 H 1.09004 * 109.47456 * 59.99908 * 24 2 1 26 26 C 1.53002 * 109.47145 * 299.99975 * 24 2 1 27 27 H 1.08997 * 109.46634 * 299.99871 * 1 2 3 28 28 H 1.08997 * 109.46695 * 59.99993 * 1 2 3 29 29 H 1.08999 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47242 * 300.00071 * 4 2 1 31 31 H 1.09002 * 109.47349 * 59.99673 * 4 2 1 32 32 H 1.09004 * 109.47025 * 299.99669 * 5 4 2 33 33 H 1.08998 * 109.47476 * 180.02562 * 5 4 2 34 34 H 0.97002 * 120.00075 * 95.00218 * 8 6 5 35 35 H 1.08000 * 119.91599 * 0.02562 * 10 9 8 36 36 H 1.07997 * 120.08493 * 180.02562 * 11 10 9 37 37 H 0.97003 * 119.99702 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.08560 * 179.72103 * 21 12 11 39 39 H 1.07995 * 119.91766 * 180.27591 * 22 21 12 40 40 H 1.08999 * 109.46911 * 179.97438 * 23 6 5 41 41 H 1.08998 * 109.47190 * 299.99468 * 23 6 5 42 42 H 1.08998 * 109.47190 * 299.99968 * 26 24 2 43 43 H 1.08996 * 109.46887 * 60.00109 * 26 24 2 44 44 H 1.09002 * 109.47166 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0796 -1.4434 0.0003 7 1 3.7159 -2.4709 0.0001 8 7 5.5445 -1.4434 0.0009 9 6 6.2391 -2.4282 -0.6889 10 6 7.6348 -2.4248 -0.6865 11 6 8.3233 -3.3889 -1.3612 12 6 7.6225 -4.3900 -2.0623 13 6 8.3285 -5.3910 -2.7634 14 1 9.3356 -5.2028 -3.1051 15 6 7.7239 -6.6268 -3.0156 16 7 6.6728 -6.9938 -2.3271 17 14 8.4165 -7.7535 -4.3347 18 1 7.6012 -8.9926 -4.4054 19 1 8.3779 -7.0606 -5.6477 20 1 9.8206 -8.1026 -4.0004 21 6 6.2137 -4.3838 -2.0651 22 6 5.5382 -3.4168 -1.3812 23 6 3.5696 -0.7221 1.2495 24 6 2.0400 -0.7212 1.2492 25 1 1.6767 -1.7489 1.2492 26 6 1.5300 0.0000 2.4984 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.9337 0.3058 -1.2487 33 1 3.9334 -1.2352 -2.1391 34 1 6.0293 -0.7554 0.4831 35 1 8.1706 -1.6569 -0.1483 36 1 9.4033 -3.3853 -1.3581 37 1 6.2537 -7.8510 -2.5018 38 1 5.6700 -5.1455 -2.6042 39 1 4.4583 -3.4134 -1.3788 40 1 3.9322 -1.2365 2.1395 41 1 3.9333 0.3054 1.2498 42 1 1.8934 1.0276 2.4985 43 1 0.4401 0.0000 2.4984 44 1 1.8937 -0.5136 3.3884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251880151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:01 Heat of formation + Delta-G solvation = -10.922705 kcal Electronic energy + Delta-G solvation = -20945.195912 eV Core-core repulsion = 18053.393073 eV Total energy + Delta-G solvation = -2891.802840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.43552 -37.64464 -35.06772 -33.17558 -32.17442 -30.97201 -29.41153 -28.39549 -26.93707 -25.26203 -23.96524 -22.03100 -21.26570 -20.71597 -19.67637 -19.47173 -17.16859 -16.18021 -15.34882 -14.94390 -14.70385 -14.48878 -14.32120 -14.02481 -13.68617 -13.10437 -12.85637 -12.61975 -12.29213 -12.13189 -12.01435 -11.97178 -11.79316 -11.65623 -11.60279 -11.14474 -10.99132 -10.89919 -10.88344 -10.71560 -10.46636 -10.45601 -10.07502 -9.91763 -9.65786 -9.22679 -9.14277 -8.48708 -7.44554 -6.60097 -6.33140 -3.99271 2.96397 3.14148 3.16352 3.19628 3.39953 4.08124 4.26237 4.61634 4.71372 4.80583 4.91494 5.04397 5.23439 5.38481 5.41263 5.51618 5.55282 5.57113 5.65583 5.76300 5.80547 5.84759 5.89295 5.91275 5.98395 6.03071 6.19178 6.27618 6.29229 6.32539 6.37567 6.40238 6.52850 6.64569 6.98264 7.01494 7.24506 7.39951 7.61613 7.73687 7.89467 8.19253 8.34636 8.55572 8.76395 8.85902 9.09969 9.19962 10.41182 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.029865 B = 0.003717 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.328958 B = 7531.209662 C = 7989.596950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.165 3.835 7 H 0.071 0.929 8 N -0.758 5.758 9 C 0.096 3.904 10 C -0.161 4.161 11 C -0.187 4.187 12 C 0.074 3.926 13 C -0.469 4.469 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.809 5.809 17 Si 0.902 3.098 18 H -0.281 1.281 19 H -0.266 1.266 20 H -0.268 1.268 21 C -0.124 4.124 22 C -0.164 4.164 23 C -0.119 4.119 24 C -0.084 4.084 25 H 0.071 0.929 26 C -0.148 4.148 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.382 0.618 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.276 0.724 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.875 11.212 5.167 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.173 4.173 6 C 0.058 3.942 7 H 0.089 0.911 8 N -0.391 5.391 9 C -0.001 4.001 10 C -0.183 4.183 11 C -0.207 4.207 12 C 0.071 3.929 13 C -0.500 4.500 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.436 5.436 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.191 1.191 20 H -0.193 1.193 21 C -0.144 4.144 22 C -0.186 4.186 23 C -0.157 4.157 24 C -0.103 4.103 25 H 0.089 0.911 26 C -0.205 4.205 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.214 0.786 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.187 10.916 5.151 16.457 hybrid contribution 0.507 -0.365 -0.388 0.735 sum -10.680 10.551 4.762 15.750 Atomic orbital electron populations 1.21899 0.95623 1.01762 1.01346 1.21175 0.95078 0.99486 0.94743 0.91464 1.21575 0.95926 1.00586 0.96993 1.22062 0.94418 1.00891 0.99933 1.20568 0.81856 0.98850 0.92939 0.91143 1.43954 1.03177 1.31956 1.60011 1.17355 0.90538 0.92179 1.00067 1.19804 0.91751 1.01160 1.05613 1.20536 0.97438 0.99408 1.03348 1.17476 0.91865 0.92046 0.91508 1.19334 1.01020 0.97142 1.32495 0.91057 1.25780 0.94457 0.98402 0.95342 1.69850 1.19127 1.20652 1.33971 0.86475 0.79644 0.79027 0.82092 1.20605 1.19119 1.19303 1.20938 0.94605 0.97900 1.00979 1.20122 0.97152 0.97548 1.03794 1.21828 0.94939 1.00671 0.98251 1.21094 0.94909 0.99835 0.94416 0.91082 1.21881 1.00900 1.00325 0.97377 0.92616 0.92977 0.92730 0.91973 0.92256 0.92489 0.91365 0.78599 0.89717 0.89167 0.91329 0.86485 0.89308 0.91709 0.92093 0.92906 0.92491 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 2 C -0.09 -0.87 2.25 -90.62 -0.20 -1.07 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -1.31 5.20 -26.74 -0.14 -1.45 16 5 C -0.13 -1.88 5.42 -26.73 -0.14 -2.02 16 6 C 0.16 2.46 2.14 -67.93 -0.15 2.32 16 7 H 0.07 1.19 6.45 -51.93 -0.33 0.86 16 8 N -0.76 -13.27 5.22 -52.04 -0.27 -13.54 16 9 C 0.10 2.10 6.65 -83.69 -0.56 1.54 16 10 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 11 C -0.19 -4.72 9.74 -39.26 -0.38 -5.10 16 12 C 0.07 2.03 5.57 -106.79 -0.60 1.43 16 13 C -0.47 -12.93 9.03 -37.87 -0.34 -13.27 16 14 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 15 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 16 N -0.81 -21.74 10.96 55.54 0.61 -21.13 16 17 Si 0.90 19.48 29.59 -169.99 -5.03 14.45 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 C -0.12 -3.30 8.63 -39.26 -0.34 -3.64 16 22 C -0.16 -3.89 8.75 -39.77 -0.35 -4.23 16 23 C -0.12 -1.43 4.67 -26.76 -0.12 -1.55 16 24 C -0.08 -0.87 2.24 -90.65 -0.20 -1.07 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 C -0.15 -1.30 8.84 37.16 0.33 -0.97 16 27 H 0.05 0.43 6.43 -51.93 -0.33 0.10 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.12 7.66 -51.93 -0.40 0.72 16 34 H 0.38 6.03 8.60 -40.82 -0.35 5.68 16 35 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 38 H 0.12 3.23 6.17 -52.49 -0.32 2.90 16 39 H 0.09 1.93 6.05 -52.49 -0.32 1.62 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -27.82 339.69 -10.36 -38.18 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.44 Total: 9.15 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: -3.35 Total: -32.23 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.34 Total: -34.68 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.82 -10.36 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251880151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.261 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds