Wall clock time and date at job start Mon Mar 30 2020 19:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32553 * 1 3 3 C 1.50706 * 119.99686 * 2 1 4 4 C 1.47819 * 120.00566 * 180.02562 * 2 1 3 5 5 C 1.39595 * 120.10238 * 245.02527 * 4 2 1 6 6 C 1.38001 * 120.00667 * 179.97438 * 5 4 2 7 7 C 1.38238 * 120.21841 * 359.73944 * 6 5 4 8 8 C 1.38982 * 120.20929 * 0.51339 * 7 6 5 9 9 N 1.39703 * 120.00307 * 179.76518 * 8 7 6 10 10 C 1.46499 * 119.99920 * 359.72799 * 9 8 7 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47233 * 299.99500 * 11 10 9 13 13 C 1.52996 * 109.47328 * 59.99969 * 11 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 11 10 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 11 18 18 N 1.31520 * 120.00162 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99868 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47023 * 90.00014 * 19 17 15 21 21 H 1.48496 * 109.47251 * 210.00457 * 19 17 15 22 22 H 1.48498 * 109.47139 * 330.00202 * 19 17 15 23 23 C 1.38679 * 119.99482 * 359.49005 * 8 7 6 24 24 H 1.07994 * 120.00604 * 0.02562 * 1 2 3 25 25 H 1.08008 * 119.99392 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47378 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47227 * 300.00060 * 3 2 1 28 28 H 1.09009 * 109.46885 * 59.99663 * 3 2 1 29 29 H 1.08001 * 120.00047 * 359.95165 * 5 4 2 30 30 H 1.07998 * 119.89614 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.89244 * 180.25648 * 7 6 5 32 32 H 0.97000 * 119.99659 * 179.72046 * 9 8 7 33 33 H 1.09002 * 109.47391 * 59.99688 * 10 9 8 34 34 H 1.09001 * 109.46813 * 299.99745 * 10 9 8 35 35 H 1.09000 * 109.46986 * 60.00203 * 12 11 10 36 36 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 38 38 H 1.08992 * 109.47554 * 59.99639 * 13 11 10 39 39 H 1.09004 * 109.47108 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.46870 * 299.99783 * 13 11 10 41 41 H 1.09001 * 109.47109 * 299.99380 * 14 11 10 42 42 H 1.09002 * 109.47508 * 59.99571 * 14 11 10 43 43 H 0.96996 * 119.99309 * 179.97438 * 18 17 15 44 44 H 1.07993 * 120.11290 * 180.22924 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3255 0.0000 0.0000 3 6 2.0790 1.3052 0.0000 4 6 2.0648 -1.2801 -0.0006 5 6 2.8564 -1.6319 1.0940 6 6 3.5453 -2.8277 1.0916 7 6 3.4504 -3.6831 0.0099 8 6 2.6690 -3.3395 -1.0869 9 7 2.5800 -4.2051 -2.1799 10 6 3.3152 -5.4722 -2.1725 11 6 3.0476 -6.2246 -3.4776 12 6 1.5491 -6.5053 -3.6065 13 6 3.5107 -5.3732 -4.6613 14 6 3.8149 -7.5483 -3.4696 15 6 3.5509 -8.2898 -4.7547 16 1 2.9005 -7.8601 -5.5022 17 6 4.1396 -9.5167 -4.9762 18 7 3.9087 -10.1640 -6.0976 19 14 5.2650 -10.2596 -3.6837 20 1 4.4645 -11.0907 -2.7489 21 1 6.2888 -11.1068 -4.3466 22 1 5.9366 -9.1720 -2.9279 23 6 1.9730 -2.1400 -1.0938 24 1 -0.5401 0.9352 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 3.1506 1.1061 0.0005 27 1 1.8156 1.8768 -0.8900 28 1 1.8155 1.8768 0.8900 29 1 2.9302 -0.9680 1.9427 30 1 4.1576 -3.0979 1.9392 31 1 3.9884 -4.6195 0.0153 32 1 2.0314 -3.9670 -2.9436 33 1 2.9856 -6.0787 -1.3288 34 1 4.3828 -5.2723 -2.0811 35 1 1.0020 -5.5625 -3.6119 36 1 1.3584 -7.0417 -4.5359 37 1 1.2191 -7.1118 -2.7630 38 1 4.5782 -5.1733 -4.5696 39 1 3.3205 -5.9095 -5.5911 40 1 2.9637 -4.4304 -4.6668 41 1 4.8825 -7.3489 -3.3776 42 1 3.4846 -8.1548 -2.6262 43 1 4.3233 -11.0269 -6.2535 44 1 1.3623 -1.8729 -1.9435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203960750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:55 Heat of formation + Delta-G solvation = 20.862743 kcal Electronic energy + Delta-G solvation = -20472.181588 eV Core-core repulsion = 17581.757068 eV Total energy + Delta-G solvation = -2890.424519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.55416 -37.73789 -35.59579 -33.83279 -32.23714 -30.27192 -28.97162 -27.57860 -27.36124 -26.54956 -25.80344 -23.10210 -22.35011 -21.50203 -18.80103 -18.21905 -16.96815 -16.66743 -15.99177 -15.32324 -14.86263 -14.51152 -14.30924 -14.06158 -13.76427 -13.64268 -13.30395 -13.16711 -13.03837 -12.76555 -12.31769 -12.17338 -12.12238 -11.80908 -11.36783 -11.28304 -11.14299 -11.01026 -10.81480 -10.63967 -10.45778 -10.08912 -9.81724 -9.73120 -9.53584 -9.36537 -9.01213 -8.57687 -8.55857 -7.21414 -6.06185 -4.03527 1.31976 1.70577 2.11115 3.28583 3.36782 3.39337 3.68940 3.94887 4.42966 4.58434 4.91201 5.00625 5.26147 5.27942 5.30478 5.34074 5.40186 5.41413 5.49849 5.61158 5.64808 5.66791 5.72737 5.83365 6.00886 6.07139 6.10277 6.18005 6.32188 6.35538 6.44849 6.50272 6.56292 6.59493 6.60727 6.74293 6.86022 6.98397 7.00652 7.04320 7.16908 7.34051 7.54299 7.76885 7.95042 8.51305 8.98157 9.56245 11.06696 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.034556 B = 0.003368 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.087549 B = 8311.548777 C = 8789.603958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 C -0.115 4.115 4 C -0.010 4.010 5 C -0.178 4.178 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.227 3.773 9 N -0.738 5.738 10 C 0.130 3.870 11 C -0.061 4.061 12 C -0.128 4.128 13 C -0.127 4.127 14 C -0.002 4.002 15 C -0.511 4.511 16 H 0.078 0.922 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.191 4.191 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.399 0.601 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.017 0.983 42 H 0.013 0.987 43 H 0.262 0.738 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 18.884 12.737 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.085 4.085 3 C -0.171 4.171 4 C -0.011 4.011 5 C -0.198 4.198 6 C -0.089 4.089 7 C -0.224 4.224 8 C 0.121 3.879 9 N -0.366 5.366 10 C 0.006 3.994 11 C -0.062 4.062 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.039 4.039 15 C -0.549 4.549 16 H 0.096 0.904 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.214 4.214 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.235 0.765 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.435 18.514 12.632 22.674 hybrid contribution 0.427 -0.575 0.326 0.787 sum -3.008 17.939 12.958 22.333 Atomic orbital electron populations 1.24072 0.94726 1.01946 1.01602 1.20559 0.94482 0.93441 1.00044 1.20820 1.00419 0.93987 1.01914 1.18617 0.95909 0.92783 0.93749 1.20810 1.01769 0.98437 0.98802 1.20776 0.97424 0.93518 0.97202 1.20735 1.05031 1.01998 0.94608 1.17806 0.92888 0.89320 0.87854 1.44998 1.53232 1.19972 1.18408 1.21601 0.95245 0.83550 0.98994 1.20643 0.96691 0.96623 0.92194 1.21756 0.94419 0.99333 1.02977 1.21749 0.99884 0.97372 0.99458 1.19591 0.94997 0.91405 0.97946 1.21085 1.29182 1.02882 1.01744 0.90429 1.25010 0.96279 0.96980 0.95221 1.69906 1.44631 1.15037 1.24715 0.86844 0.81147 0.79478 0.82192 1.20382 1.21489 1.19065 1.20600 1.05917 0.94854 1.00016 0.88104 0.88223 0.91685 0.91407 0.91524 0.86843 0.86423 0.86139 0.76508 0.92674 0.92669 0.94956 0.91015 0.93518 0.93510 0.91018 0.94941 0.96462 0.96912 0.92783 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 13.99 28.82 0.40 -1.32 16 2 C -0.09 -0.86 5.44 -102.61 -0.56 -1.42 16 3 C -0.11 -0.93 10.04 36.01 0.36 -0.57 16 4 C -0.01 -0.12 5.22 -105.04 -0.55 -0.67 16 5 C -0.18 -2.08 9.77 -39.16 -0.38 -2.47 16 6 C -0.07 -0.84 10.02 -39.67 -0.40 -1.24 16 7 C -0.20 -2.71 9.31 -39.31 -0.37 -3.08 16 8 C 0.23 3.16 6.65 -83.83 -0.56 2.61 16 9 N -0.74 -10.45 5.14 -58.67 -0.30 -10.75 16 10 C 0.13 2.05 3.80 -4.04 -0.02 2.04 16 11 C -0.06 -1.11 0.54 -154.51 -0.08 -1.20 16 12 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 13 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 14 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 15 C -0.51 -13.66 8.20 -34.44 -0.28 -13.94 16 16 H 0.08 2.21 5.92 -52.48 -0.31 1.90 16 17 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 18 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 19 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 C -0.19 -2.48 9.56 -38.99 -0.37 -2.85 16 24 H 0.10 0.75 8.05 -52.49 -0.42 0.32 16 25 H 0.10 0.96 8.05 -52.48 -0.42 0.54 16 26 H 0.06 0.55 7.99 -51.93 -0.41 0.13 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.12 1.60 6.71 -52.49 -0.35 1.25 16 32 H 0.40 5.37 6.17 -40.82 -0.25 5.11 16 33 H 0.06 0.88 7.93 -51.93 -0.41 0.46 16 34 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 35 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 36 H 0.07 1.43 6.61 -51.93 -0.34 1.08 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 40 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -28.87 350.09 -8.60 -37.47 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.29 Total: 4.21 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.38 Total: -26.38 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.47 Total: -37.19 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.87 -8.60 -37.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203960750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.331 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds