Wall clock time and date at job start Mon Mar 30 2020 19:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32553 * 1 3 3 C 1.50706 * 119.99686 * 2 1 4 4 C 1.47819 * 120.00566 * 180.02562 * 2 1 3 5 5 C 1.39595 * 120.10238 * 245.02527 * 4 2 1 6 6 C 1.38001 * 120.00667 * 179.97438 * 5 4 2 7 7 C 1.38238 * 120.21841 * 359.73944 * 6 5 4 8 8 C 1.38982 * 120.20929 * 0.51339 * 7 6 5 9 9 N 1.39703 * 120.00307 * 179.76518 * 8 7 6 10 10 C 1.46499 * 119.99920 * 359.72799 * 9 8 7 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47233 * 299.99500 * 11 10 9 13 13 C 1.52996 * 109.47328 * 59.99969 * 11 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 11 10 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 11 18 18 N 1.31520 * 120.00162 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99868 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47023 * 90.00014 * 19 17 15 21 21 H 1.48496 * 109.47251 * 210.00457 * 19 17 15 22 22 H 1.48498 * 109.47139 * 330.00202 * 19 17 15 23 23 C 1.38679 * 119.99482 * 359.49005 * 8 7 6 24 24 H 1.07994 * 120.00604 * 0.02562 * 1 2 3 25 25 H 1.08008 * 119.99392 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47378 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47227 * 300.00060 * 3 2 1 28 28 H 1.09009 * 109.46885 * 59.99663 * 3 2 1 29 29 H 1.08001 * 120.00047 * 359.95165 * 5 4 2 30 30 H 1.07998 * 119.89614 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.89244 * 180.25648 * 7 6 5 32 32 H 0.97000 * 119.99659 * 179.72046 * 9 8 7 33 33 H 1.09002 * 109.47391 * 59.99688 * 10 9 8 34 34 H 1.09001 * 109.46813 * 299.99745 * 10 9 8 35 35 H 1.09000 * 109.46986 * 60.00203 * 12 11 10 36 36 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 38 38 H 1.08992 * 109.47554 * 59.99639 * 13 11 10 39 39 H 1.09004 * 109.47108 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.46870 * 299.99783 * 13 11 10 41 41 H 1.09001 * 109.47109 * 299.99380 * 14 11 10 42 42 H 1.09002 * 109.47508 * 59.99571 * 14 11 10 43 43 H 0.96996 * 119.99309 * 179.97438 * 18 17 15 44 44 H 1.07993 * 120.11290 * 180.22924 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3255 0.0000 0.0000 3 6 2.0790 1.3052 0.0000 4 6 2.0648 -1.2801 -0.0006 5 6 2.8564 -1.6319 1.0940 6 6 3.5453 -2.8277 1.0916 7 6 3.4504 -3.6831 0.0099 8 6 2.6690 -3.3395 -1.0869 9 7 2.5800 -4.2051 -2.1799 10 6 3.3152 -5.4722 -2.1725 11 6 3.0476 -6.2246 -3.4776 12 6 1.5491 -6.5053 -3.6065 13 6 3.5107 -5.3732 -4.6613 14 6 3.8149 -7.5483 -3.4696 15 6 3.5509 -8.2898 -4.7547 16 1 2.9005 -7.8601 -5.5022 17 6 4.1396 -9.5167 -4.9762 18 7 3.9087 -10.1640 -6.0976 19 14 5.2650 -10.2596 -3.6837 20 1 4.4645 -11.0907 -2.7489 21 1 6.2888 -11.1068 -4.3466 22 1 5.9366 -9.1720 -2.9279 23 6 1.9730 -2.1400 -1.0938 24 1 -0.5401 0.9352 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 3.1506 1.1061 0.0005 27 1 1.8156 1.8768 -0.8900 28 1 1.8155 1.8768 0.8900 29 1 2.9302 -0.9680 1.9427 30 1 4.1576 -3.0979 1.9392 31 1 3.9884 -4.6195 0.0153 32 1 2.0314 -3.9670 -2.9436 33 1 2.9856 -6.0787 -1.3288 34 1 4.3828 -5.2723 -2.0811 35 1 1.0020 -5.5625 -3.6119 36 1 1.3584 -7.0417 -4.5359 37 1 1.2191 -7.1118 -2.7630 38 1 4.5782 -5.1733 -4.5696 39 1 3.3205 -5.9095 -5.5911 40 1 2.9637 -4.4304 -4.6668 41 1 4.8825 -7.3489 -3.3776 42 1 3.4846 -8.1548 -2.6262 43 1 4.3233 -11.0269 -6.2535 44 1 1.3623 -1.8729 -1.9435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203960750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:59:54 Heat of formation + Delta-G solvation = 6.922664 kcal Electronic energy + Delta-G solvation = -20472.786075 eV Core-core repulsion = 17581.757068 eV Total energy + Delta-G solvation = -2891.029006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56063 -39.05854 -36.57589 -35.07410 -34.10741 -31.23729 -30.26411 -29.15745 -28.03344 -28.02385 -27.08434 -24.51414 -23.61174 -22.57514 -19.75649 -19.62388 -18.91040 -17.73063 -17.04396 -16.49977 -16.08355 -15.82947 -15.76591 -15.11372 -14.89946 -14.78814 -14.47464 -14.36258 -14.21037 -14.15073 -13.83272 -13.40851 -12.95708 -12.89918 -12.85013 -12.63359 -12.53868 -12.31353 -12.22649 -12.14445 -11.75274 -11.63350 -11.55794 -11.16744 -10.91245 -10.87333 -10.71344 -10.13778 -9.46218 -8.25393 -8.23078 -6.23944 0.41020 0.75960 1.35188 1.36346 1.38381 1.48723 2.38832 2.57781 3.00193 3.12320 3.78880 3.93184 4.06293 4.09189 4.18048 4.23506 4.36669 4.51950 4.61822 4.66487 4.69270 4.72528 4.74277 4.82355 4.89585 4.93609 4.96655 5.04539 5.06110 5.15056 5.18702 5.28708 5.37170 5.38342 5.43884 5.52371 5.62131 5.65168 5.66579 5.74702 5.76500 5.91307 6.05935 6.36184 6.49525 6.83247 6.89193 7.38860 8.92924 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.034556 B = 0.003368 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.087549 B = 8311.548777 C = 8789.603958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 C -0.112 4.112 4 C -0.015 4.015 5 C -0.180 4.180 6 C -0.072 4.072 7 C -0.217 4.217 8 C 0.212 3.788 9 N -0.738 5.738 10 C 0.145 3.855 11 C -0.058 4.058 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.001 4.001 15 C -0.505 4.505 16 H 0.046 0.954 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.939 3.061 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.247 1.247 23 C -0.200 4.200 24 H 0.121 0.879 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.119 0.881 32 H 0.402 0.598 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.262 0.738 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 20.954 15.224 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.101 4.101 3 C -0.168 4.168 4 C -0.016 4.016 5 C -0.200 4.200 6 C -0.091 4.091 7 C -0.240 4.240 8 C 0.108 3.892 9 N -0.368 5.368 10 C 0.021 3.979 11 C -0.058 4.058 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.039 4.039 15 C -0.543 4.543 16 H 0.064 0.936 17 C -0.194 4.194 18 N -0.596 5.596 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.170 1.170 23 C -0.223 4.223 24 H 0.139 0.861 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.137 0.863 32 H 0.238 0.762 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.264 20.618 15.142 25.788 hybrid contribution 0.284 -1.117 -0.452 1.238 sum -2.980 19.501 14.691 24.596 Atomic orbital electron populations 1.24214 0.94529 1.02599 1.00406 1.20701 0.94861 0.93417 1.01136 1.20825 0.99765 0.93167 1.03058 1.18922 0.95783 0.93429 0.93455 1.21110 1.01149 0.98554 0.99215 1.21060 0.97367 0.93277 0.97394 1.20887 1.05471 1.02472 0.95182 1.17941 0.93685 0.89689 0.87917 1.44796 1.53533 1.19524 1.18908 1.21275 0.95521 0.84072 0.97060 1.20522 0.96278 0.95047 0.93957 1.21667 0.94559 1.00397 1.01248 1.21662 1.00290 0.98173 0.97732 1.19552 0.95635 0.93210 0.95506 1.21392 1.27464 1.02788 1.02660 0.93564 1.25906 0.98306 0.97829 0.97335 1.70061 1.46652 1.15729 1.27137 0.85821 0.79157 0.79037 0.79610 1.19607 1.21610 1.17029 1.20738 1.06052 0.94815 1.00653 0.86078 0.88996 0.92256 0.90578 0.90040 0.85045 0.84281 0.86278 0.76196 0.92572 0.92624 0.92136 0.94069 0.93540 0.93553 0.94063 0.92122 0.96383 0.96552 0.92869 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 13.99 66.67 0.93 -1.97 16 2 C -0.10 -1.81 5.44 -18.47 -0.10 -1.91 16 3 C -0.11 -1.51 10.04 71.24 0.72 -0.80 16 4 C -0.02 -0.34 5.22 -20.14 -0.11 -0.44 16 5 C -0.18 -3.79 9.77 22.54 0.22 -3.57 16 6 C -0.07 -1.57 10.02 22.21 0.22 -1.35 16 7 C -0.22 -5.49 9.31 22.45 0.21 -5.28 16 8 C 0.21 5.56 6.65 38.17 0.25 5.81 16 9 N -0.74 -19.60 5.14 -339.53 -1.74 -21.35 16 10 C 0.15 4.35 3.80 86.38 0.33 4.67 16 11 C -0.06 -2.06 0.54 -52.18 -0.03 -2.08 16 12 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 13 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 14 C 0.00 -0.05 3.11 29.85 0.09 0.04 16 15 C -0.50 -27.61 8.20 25.60 0.21 -27.40 16 16 H 0.05 2.76 5.92 -2.91 -0.02 2.75 16 17 C 0.00 0.12 5.47 84.65 0.46 0.59 16 18 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 19 Si 0.94 43.87 27.47 68.60 1.88 45.75 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.25 -10.66 6.54 99.48 0.65 -10.00 16 23 C -0.20 -4.86 9.56 22.65 0.22 -4.64 16 24 H 0.12 1.42 8.05 -2.91 -0.02 1.40 16 25 H 0.09 1.60 8.05 -2.91 -0.02 1.58 16 26 H 0.06 0.87 7.99 -2.39 -0.02 0.85 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.12 2.97 6.71 -2.91 -0.02 2.95 16 32 H 0.40 10.02 6.17 -92.71 -0.57 9.44 16 33 H 0.06 1.68 7.93 -2.39 -0.02 1.66 16 34 H 0.06 1.67 7.95 -2.39 -0.02 1.65 16 35 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 36 H 0.04 1.68 6.61 -2.39 -0.02 1.66 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.68 6.62 -2.38 -0.02 1.66 16 40 H 0.06 1.75 6.86 -2.39 -0.02 1.74 16 41 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 42 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -62.92 350.09 5.56 -57.36 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.33 Total: 22.89 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 4.79 Total: -45.67 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.44 Total: -80.33 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -62.92 5.56 -57.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203960750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.283 kcal (2) G-P(sol) polarization free energy of solvation -62.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds