Wall clock time and date at job start Mon Mar 30 2020 20:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47439 * 2 1 4 4 N 1.46897 * 109.47499 * 179.70658 * 3 2 1 5 5 C 1.46896 * 111.00244 * 288.19439 * 4 3 2 6 6 C 1.50696 * 109.47569 * 160.35402 * 5 4 3 7 7 H 1.08005 * 119.99588 * 4.63491 * 6 5 4 8 8 C 1.37875 * 120.00348 * 184.64560 * 6 5 4 9 9 N 1.31510 * 119.99893 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00202 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47273 * 89.99717 * 10 8 6 12 12 H 1.48502 * 109.46822 * 209.99845 * 10 8 6 13 13 H 1.48498 * 109.46908 * 329.99518 * 10 8 6 14 14 C 1.46897 * 111.00085 * 164.23343 * 4 3 2 15 15 C 1.50702 * 109.47133 * 293.95499 * 14 4 3 16 16 C 1.38233 * 120.00396 * 269.72641 * 15 14 4 17 17 C 1.38230 * 120.00377 * 179.79143 * 16 15 14 18 18 C 1.38241 * 119.99518 * 0.44160 * 17 16 15 19 19 C 1.50702 * 119.99615 * 179.83993 * 18 17 16 20 20 C 1.52993 * 117.50003 * 8.71722 * 19 18 17 21 21 C 1.53006 * 117.49552 * 300.05696 * 19 18 17 22 22 C 1.38229 * 120.00177 * 359.80802 * 18 17 16 23 23 C 1.38237 * 120.00271 * 359.97438 * 22 18 17 24 24 H 1.09006 * 109.47108 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46774 * 299.99857 * 1 2 3 26 26 H 1.08995 * 109.47264 * 60.00213 * 1 2 3 27 27 H 1.09005 * 109.47393 * 239.99744 * 2 1 3 28 28 H 1.09007 * 109.47025 * 120.00063 * 2 1 3 29 29 H 1.08995 * 109.46867 * 59.70616 * 3 2 1 30 30 H 1.09000 * 109.46629 * 299.70949 * 3 2 1 31 31 H 1.09007 * 109.46532 * 280.35146 * 5 4 3 32 32 H 1.09001 * 109.47418 * 40.34924 * 5 4 3 33 33 H 0.96999 * 120.00366 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.46966 * 53.95752 * 14 4 3 35 35 H 1.08999 * 109.47068 * 173.95508 * 14 4 3 36 36 H 1.08006 * 119.99631 * 359.97438 * 16 15 14 37 37 H 1.07996 * 120.00557 * 180.27090 * 17 16 15 38 38 H 1.08998 * 115.55038 * 154.39273 * 19 18 17 39 39 H 1.08997 * 117.50090 * 0.02562 * 20 19 18 40 40 H 1.09007 * 117.49866 * 145.02617 * 20 19 18 41 41 H 1.09001 * 117.49650 * 214.97827 * 21 19 18 42 42 H 1.09000 * 117.49785 * 359.97438 * 21 19 18 43 43 H 1.08000 * 120.00034 * 180.02562 * 22 18 17 44 44 H 1.07993 * 120.00177 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0071 5 6 4.0292 1.0165 1.3132 6 6 5.4591 0.5658 1.1617 7 1 5.9578 0.6629 0.2086 8 6 6.1308 0.0292 2.2397 9 7 5.5236 -0.0888 3.4002 10 14 7.9031 -0.5302 2.0517 11 1 8.8146 0.6001 2.3629 12 1 8.1696 -1.6529 2.9865 13 1 8.1340 -0.9825 0.6562 14 6 4.0372 2.7617 -0.3652 15 6 3.6856 3.0567 -1.8007 16 6 4.5500 2.6871 -2.8141 17 6 4.2255 2.9538 -4.1310 18 6 3.0407 3.5984 -4.4339 19 6 2.6885 3.8925 -5.8694 20 6 3.5747 3.2775 -6.9544 21 6 3.6490 4.7788 -6.6650 22 6 2.1787 3.9727 -3.4202 23 6 2.5011 3.7019 -2.1035 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6724 1.9578 0.8873 30 1 1.6809 1.9547 -0.8926 31 1 3.9836 1.8517 2.0122 32 1 3.4264 0.1915 1.6929 33 1 5.9961 -0.4659 4.1587 34 1 3.5998 3.5235 0.2800 35 1 5.1209 2.7652 -0.2485 36 1 5.4776 2.1872 -2.5771 37 1 4.8988 2.6612 -4.9231 38 1 1.6237 3.9863 -6.0825 39 1 4.4121 2.6599 -6.6300 40 1 3.0929 2.9670 -7.8816 41 1 3.2160 5.4553 -7.4019 42 1 4.5352 5.1495 -6.1500 43 1 1.2528 4.4759 -3.6568 44 1 1.8278 3.9946 -1.3115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232982602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:27 Heat of formation + Delta-G solvation = 24.365518 kcal Electronic energy + Delta-G solvation = -20748.690014 eV Core-core repulsion = 17858.417387 eV Total energy + Delta-G solvation = -2890.272627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76632 -38.90333 -37.32389 -34.95453 -34.08026 -32.02059 -31.76428 -29.11441 -27.68429 -25.63135 -24.18369 -23.56687 -22.97595 -22.76868 -21.26834 -20.92488 -18.59465 -17.67704 -16.96364 -16.61181 -16.18797 -16.00637 -15.63308 -15.53567 -15.31447 -14.77595 -14.42872 -14.20441 -13.97356 -13.78916 -13.49117 -13.28177 -12.96698 -12.80401 -12.62187 -12.59346 -12.39919 -12.31043 -12.06021 -11.99215 -11.75805 -11.70997 -11.48885 -11.32414 -11.21201 -11.13965 -10.58937 -9.75253 -9.30233 -8.97214 -8.19186 -6.28903 0.41391 0.55415 1.39692 1.41062 1.52703 2.40043 2.67252 3.11937 3.19484 3.47354 3.67910 3.92665 3.97291 4.06154 4.10679 4.15679 4.20162 4.24393 4.34240 4.49489 4.54688 4.59347 4.66439 4.76226 4.78714 4.82403 4.87255 4.97478 5.00826 5.12547 5.15587 5.17553 5.20062 5.23125 5.28904 5.30974 5.35848 5.44817 5.56821 5.67863 5.74367 5.83560 6.09273 6.14995 6.38945 6.64633 6.86085 7.40252 8.91386 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.004565 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.915959 B = 6132.657222 C = 7286.114268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.053 3.947 4 N -0.536 5.536 5 C 0.207 3.793 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.103 3.897 15 C -0.083 4.083 16 C -0.110 4.110 17 C -0.125 4.125 18 C -0.060 4.060 19 C -0.125 4.125 20 C -0.177 4.177 21 C -0.165 4.165 22 C -0.115 4.115 23 C -0.117 4.117 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.014 0.986 30 H 0.087 0.913 31 H -0.042 1.042 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.026 0.974 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.145 0.855 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 8.376 -18.425 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.075 4.075 4 N -0.260 5.260 5 C 0.081 3.919 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.025 4.025 15 C -0.083 4.083 16 C -0.129 4.129 17 C -0.143 4.143 18 C -0.060 4.060 19 C -0.143 4.143 20 C -0.213 4.213 21 C -0.202 4.202 22 C -0.133 4.133 23 C -0.136 4.136 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.105 0.895 31 H -0.024 1.024 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.162 0.838 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.865 7.975 -18.583 21.698 hybrid contribution 0.842 0.046 1.480 1.703 sum -7.023 8.021 -17.103 20.154 Atomic orbital electron populations 1.21664 0.93466 1.02321 1.02123 1.21458 0.96780 0.96119 1.01044 1.22248 0.87859 0.97436 0.99961 1.62081 1.07075 1.25613 1.31223 1.19433 0.95029 0.93017 0.84376 1.21449 0.97666 1.40230 0.96357 0.92282 1.25872 1.02927 0.95954 0.94767 1.70079 1.38905 1.46677 1.01897 0.85428 0.79256 0.77994 0.78228 1.19822 1.20681 1.19042 1.20865 1.00024 0.89513 0.92087 1.19814 0.95592 0.98459 0.94445 1.21068 0.99637 0.99236 0.92959 1.21149 0.97620 0.99738 0.95749 1.19357 0.94274 0.97942 0.94467 1.21075 0.98351 1.06695 0.88185 1.23160 1.02320 0.96163 0.99696 1.23086 1.00912 0.93715 1.02443 1.21108 1.00310 1.00401 0.91440 1.21130 0.95921 0.99180 0.97361 0.91736 0.92844 0.91431 0.92386 0.94544 0.96767 0.89479 1.02447 0.96835 0.92733 0.95555 0.91689 0.87072 0.84839 0.85731 0.88812 0.86984 0.86828 0.89375 0.83767 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.12 -4.18 6.00 30.59 0.18 -3.99 16 3 C 0.05 2.00 4.80 86.30 0.41 2.41 16 4 N -0.54 -24.18 4.37 -905.40 -3.96 -28.14 16 5 C 0.21 11.39 4.59 85.56 0.39 11.78 16 6 C -0.52 -30.17 8.61 25.60 0.22 -29.95 16 7 H 0.06 3.39 7.66 -2.91 -0.02 3.37 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 10 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.10 4.17 4.95 85.56 0.42 4.60 16 15 C -0.08 -2.79 4.94 -19.86 -0.10 -2.88 16 16 C -0.11 -3.55 9.70 22.27 0.22 -3.34 16 17 C -0.12 -3.28 9.30 22.27 0.21 -3.08 16 18 C -0.06 -1.40 5.61 -19.87 -0.11 -1.51 16 19 C -0.13 -2.15 6.04 -11.54 -0.07 -2.22 16 20 C -0.18 -2.63 9.86 30.62 0.30 -2.33 16 21 C -0.16 -2.40 10.17 30.62 0.31 -2.09 16 22 C -0.11 -2.70 9.74 22.27 0.22 -2.48 16 23 C -0.12 -3.30 7.85 22.27 0.17 -3.12 16 24 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.04 1.52 6.52 -2.38 -0.02 1.51 16 29 H 0.01 0.55 8.05 -2.39 -0.02 0.53 16 30 H 0.09 2.90 5.14 -2.39 -0.01 2.89 16 31 H -0.04 -2.50 8.00 -2.38 -0.02 -2.52 16 32 H 0.01 0.80 6.23 -2.39 -0.01 0.79 16 33 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 34 H 0.03 1.05 8.06 -2.39 -0.02 1.03 16 35 H 0.06 2.89 7.26 -2.39 -0.02 2.88 16 36 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.13 2.98 6.02 -2.91 -0.02 2.97 16 38 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 1.50 6.18 -2.39 -0.01 1.49 16 40 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.13 3.23 7.73 -2.91 -0.02 3.21 16 Total: -1.00 -65.73 352.46 3.26 -62.46 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.95 Total: 15.96 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 3.96 Total: -40.57 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.67 Total: -85.06 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.73 3.26 -62.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232982602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.830 kcal (2) G-P(sol) polarization free energy of solvation -65.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds