Wall clock time and date at job start Mon Mar 30 2020 20:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46946 * 2 1 4 4 C 1.53001 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46936 * 185.36296 * 4 3 2 6 6 C 1.36936 * 120.00268 * 87.08910 * 5 4 3 7 7 H 1.07997 * 120.00637 * 180.83552 * 6 5 4 8 8 C 1.38814 * 119.99805 * 0.83926 * 6 5 4 9 9 N 1.31620 * 120.00199 * 330.33842 * 8 6 5 10 10 Si 1.86806 * 120.00082 * 150.33880 * 8 6 5 11 11 H 1.48500 * 109.46825 * 94.99438 * 10 8 6 12 12 H 1.48499 * 109.46868 * 214.99447 * 10 8 6 13 13 H 1.48497 * 109.46985 * 334.99568 * 10 8 6 14 14 C 1.46497 * 119.99926 * 267.08491 * 5 4 3 15 15 C 1.50693 * 109.47524 * 263.98546 * 14 5 4 16 16 C 1.38141 * 119.89581 * 261.34551 * 15 14 5 17 17 C 1.38214 * 119.93921 * 179.97438 * 16 15 14 18 18 C 1.38148 * 119.93053 * 359.97438 * 17 16 15 19 19 C 1.38255 * 120.28538 * 0.02562 * 18 17 16 20 20 C 1.38455 * 119.89033 * 81.31907 * 15 14 5 21 21 C 1.51370 * 130.39999 * 0.07227 * 20 15 14 22 22 C 1.54342 * 105.17218 * 162.76803 * 21 20 15 23 23 C 1.51372 * 130.56185 * 179.97438 * 19 18 17 24 24 H 1.09007 * 109.47130 * 299.99778 * 1 2 3 25 25 H 1.08999 * 109.47298 * 59.99993 * 1 2 3 26 26 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46900 * 240.00206 * 2 1 3 28 28 H 1.08997 * 109.46981 * 120.00431 * 2 1 3 29 29 H 1.09007 * 109.47025 * 60.00157 * 3 2 1 30 30 H 1.08997 * 109.47632 * 300.00032 * 3 2 1 31 31 H 1.08997 * 109.47116 * 65.36519 * 4 3 2 32 32 H 1.09002 * 109.46891 * 305.35809 * 4 3 2 33 33 H 0.96995 * 120.00409 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47331 * 143.98378 * 14 5 4 35 35 H 1.09004 * 109.47418 * 23.99080 * 14 5 4 36 36 H 1.07996 * 120.03513 * 359.94926 * 16 15 14 37 37 H 1.07995 * 120.03512 * 180.02562 * 17 16 15 38 38 H 1.08005 * 119.89316 * 179.97438 * 18 17 16 39 39 H 1.09001 * 110.30488 * 43.83927 * 21 20 15 40 40 H 1.09003 * 110.38051 * 281.73181 * 21 20 15 41 41 H 1.09007 * 110.81867 * 268.12054 * 22 21 20 42 42 H 1.09000 * 110.99137 * 144.66094 * 22 21 20 43 43 H 1.08994 * 110.30244 * 78.22370 * 23 19 18 44 44 H 1.08999 * 110.30363 * 316.16936 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8177 0.1297 6 6 4.2291 3.3699 1.3711 7 1 4.5762 4.3882 1.4661 8 6 3.9564 2.6208 2.5075 9 7 3.0383 1.6785 2.4699 10 14 4.8923 2.9502 4.0903 11 1 4.1085 3.8779 4.9449 12 1 5.1061 1.6714 4.8142 13 1 6.2063 3.5633 3.7698 14 6 4.3637 3.6021 -1.0692 15 6 5.8382 3.5115 -1.3667 16 6 6.6839 4.5302 -0.9728 17 6 8.0365 4.4478 -1.2447 18 6 8.5401 3.3464 -1.9095 19 6 7.6966 2.3250 -2.3052 20 6 6.3409 2.4071 -2.0335 21 6 5.6366 1.1767 -2.5639 22 6 6.6256 0.5460 -3.5670 23 6 7.9911 1.0325 -3.0359 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 1.0140 -0.9332 32 1 3.9329 0.8479 0.8390 33 1 2.8474 1.1553 3.2640 34 1 4.0903 4.6439 -0.9014 35 1 3.7977 3.2097 -1.9142 36 1 6.2886 5.3905 -0.4532 37 1 8.6992 5.2431 -0.9372 38 1 9.5971 3.2828 -2.1220 39 1 4.7129 1.4581 -3.0695 40 1 5.4257 0.4805 -1.7521 41 1 6.4455 0.9192 -4.5752 42 1 6.5662 -0.5421 -3.5422 43 1 8.4149 0.2986 -2.3505 44 1 8.6752 1.2141 -3.8649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249458808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:31 Heat of formation + Delta-G solvation = 33.933932 kcal Electronic energy + Delta-G solvation = -21790.894709 eV Core-core repulsion = 18901.036999 eV Total energy + Delta-G solvation = -2889.857710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.70832 -36.33247 -35.26458 -33.50069 -32.11180 -30.19988 -28.53306 -28.18638 -26.86868 -25.41109 -23.46418 -21.72363 -21.08093 -20.48751 -20.02263 -19.09539 -16.60698 -15.75561 -15.41274 -14.99960 -14.66403 -14.26512 -14.09994 -13.47923 -13.37348 -13.10724 -12.76113 -12.57307 -12.50632 -12.06577 -11.70462 -11.43571 -11.41305 -11.33847 -11.18370 -10.91422 -10.74459 -10.61740 -10.58359 -10.41832 -10.21989 -10.00906 -9.91436 -9.81693 -9.58137 -9.08318 -8.19973 -8.02846 -7.95725 -6.85226 -5.73317 -2.95712 1.91354 1.96775 3.42397 3.52106 3.56950 4.26154 4.60592 4.76621 4.92273 5.20315 5.33561 5.43045 5.49448 5.58989 5.62132 5.70183 5.86356 5.87291 5.96735 5.97436 6.01573 6.04771 6.08885 6.15106 6.24067 6.29187 6.41280 6.49565 6.55559 6.62661 6.67958 6.74696 6.81405 6.85405 6.99209 7.00280 7.10258 7.27941 7.35122 7.38299 7.59754 7.76115 7.86284 8.22506 8.37555 9.30357 9.92966 10.37403 11.28819 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.007412 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.292479 B = 3776.753558 C = 5141.597033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.117 4.117 4 C 0.169 3.831 5 N -0.590 5.590 6 C -0.247 4.247 7 H 0.073 0.927 8 C 0.005 3.995 9 N -0.884 5.884 10 Si 0.877 3.123 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.185 3.815 15 C -0.064 4.064 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.109 4.109 20 C -0.083 4.083 21 C -0.080 4.080 22 C -0.121 4.121 23 C -0.077 4.077 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.011 0.989 31 H 0.014 0.986 32 H 0.079 0.921 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 -1.380 -10.547 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.156 4.156 4 C 0.044 3.956 5 N -0.310 5.310 6 C -0.376 4.376 7 H 0.090 0.910 8 C -0.192 4.192 9 N -0.529 5.529 10 Si 0.706 3.294 11 H -0.220 1.220 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.057 3.943 15 C -0.067 4.067 16 C -0.126 4.126 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.109 4.109 20 C -0.084 4.084 21 C -0.117 4.117 22 C -0.158 4.158 23 C -0.114 4.114 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.639 -1.499 -10.400 11.487 hybrid contribution 0.608 0.198 1.132 1.300 sum 5.248 -1.301 -9.269 10.731 Atomic orbital electron populations 1.21731 0.97697 0.99674 1.01030 1.21360 0.94058 0.99435 1.00078 1.22179 0.98612 0.93934 1.00882 1.21040 0.92020 0.85015 0.97526 1.44114 1.74931 1.11293 1.00660 1.19141 1.38271 0.97567 0.82584 0.90952 1.24616 0.98703 0.98851 0.97072 1.70278 1.28757 1.25890 1.28015 0.86646 0.81265 0.76982 0.84462 1.21982 1.21729 1.20829 1.19700 0.88510 0.96065 0.90005 1.20649 0.99625 0.92339 0.94086 1.20902 0.93055 0.98996 0.99642 1.20906 0.95553 0.97951 1.00004 1.20316 0.98450 0.94216 1.01328 1.20488 0.94394 0.95732 1.00329 1.20351 0.94092 0.95186 0.98754 1.21109 0.97773 0.94647 0.98172 1.22304 0.94577 1.00157 0.98767 1.20974 0.97700 0.94139 0.98604 0.92916 0.93985 0.94396 0.94716 0.92064 0.88004 0.97025 0.96810 0.90334 0.93995 0.93433 0.93344 0.86485 0.86855 0.87441 0.91176 0.89702 0.91470 0.91048 0.90820 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.04 16 2 C -0.11 -2.12 5.93 -26.73 -0.16 -2.28 16 3 C -0.12 -2.57 4.84 -26.73 -0.13 -2.70 16 4 C 0.17 3.89 4.92 -4.04 -0.02 3.87 16 5 N -0.59 -14.15 2.53 -174.61 -0.44 -14.59 16 6 C -0.25 -6.58 9.66 -15.06 -0.15 -6.72 16 7 H 0.07 1.92 7.98 -52.49 -0.42 1.50 16 8 C 0.00 0.13 4.93 -17.43 -0.09 0.04 16 9 N -0.88 -23.93 8.31 55.49 0.46 -23.47 16 10 Si 0.88 21.62 29.64 -169.99 -5.04 16.58 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.18 3.79 5.58 -5.20 -0.03 3.76 16 15 C -0.06 -1.23 5.42 -104.58 -0.57 -1.80 16 16 C -0.11 -1.96 9.66 -39.63 -0.38 -2.34 16 17 C -0.13 -2.05 10.05 -39.62 -0.40 -2.45 16 18 C -0.12 -1.97 10.03 -39.61 -0.40 -2.37 16 19 C -0.11 -1.79 6.15 -104.19 -0.64 -2.43 16 20 C -0.08 -1.49 6.01 -104.12 -0.63 -2.12 16 21 C -0.08 -1.26 5.04 -26.85 -0.14 -1.40 16 22 C -0.12 -1.51 7.08 -25.30 -0.18 -1.69 16 23 C -0.08 -1.02 6.76 -26.83 -0.18 -1.20 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.10 2.62 6.24 -51.93 -0.32 2.30 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.01 0.29 4.79 -51.93 -0.25 0.04 16 32 H 0.08 2.06 6.00 -51.93 -0.31 1.75 16 33 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.05 0.96 7.96 -51.93 -0.41 0.55 16 35 H 0.05 0.93 7.52 -51.93 -0.39 0.54 16 36 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 40 H 0.08 1.45 6.58 -51.93 -0.34 1.11 16 41 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -27.70 342.52 -11.05 -38.75 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.48 Total: 1.42 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.71 Total: -23.86 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.02 Total: -38.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.04 Total: 16.58 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.70 -11.05 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249458808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.687 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds