Wall clock time and date at job start Mon Mar 30 2020 20:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47516 * 2 1 4 4 H 1.08997 * 109.46934 * 54.53421 * 3 2 1 5 5 C 1.50697 * 109.47126 * 174.53783 * 3 2 1 6 6 H 1.07999 * 119.99759 * 120.00123 * 5 3 2 7 7 C 1.37874 * 119.99999 * 299.99754 * 5 3 2 8 8 N 1.31514 * 119.99618 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 120.00282 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.46888 * 89.99782 * 9 7 5 11 11 H 1.48494 * 109.47472 * 209.99736 * 9 7 5 12 12 H 1.48500 * 109.47060 * 330.00073 * 9 7 5 13 13 N 1.46900 * 109.46937 * 294.53810 * 3 2 1 14 14 C 1.46902 * 110.99906 * 109.99346 * 13 3 2 15 15 C 1.53006 * 109.47113 * 176.25196 * 14 13 3 16 16 C 1.52996 * 115.55089 * 38.82117 * 15 14 13 17 17 C 1.50700 * 109.47374 * 184.98924 * 16 15 14 18 18 C 1.38233 * 119.99959 * 271.32946 * 17 16 15 19 19 C 1.38233 * 119.99759 * 179.78703 * 18 17 16 20 20 C 1.38240 * 120.00350 * 0.43428 * 19 18 17 21 21 C 1.38238 * 119.99462 * 359.81920 * 20 19 18 22 22 C 1.38230 * 120.00430 * 359.97142 * 21 20 19 23 23 C 1.53000 * 117.49397 * 253.11577 * 15 14 13 24 24 C 1.52995 * 117.49670 * 184.49499 * 15 14 13 25 25 H 1.09007 * 109.46725 * 303.94618 * 1 2 3 26 26 H 1.08998 * 109.47199 * 63.94069 * 1 2 3 27 27 H 1.08991 * 109.47237 * 183.94849 * 1 2 3 28 28 H 1.09000 * 109.47400 * 120.00114 * 2 1 3 29 29 H 1.09001 * 109.46950 * 240.00001 * 2 1 3 30 30 H 0.97001 * 119.99702 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00194 * 233.94349 * 13 3 2 32 32 H 1.08999 * 109.46909 * 296.24732 * 14 13 3 33 33 H 1.08995 * 109.47237 * 56.24920 * 14 13 3 34 34 H 1.09000 * 109.47366 * 304.98944 * 16 15 14 35 35 H 1.09004 * 109.47383 * 64.99010 * 16 15 14 36 36 H 1.07993 * 120.00472 * 359.97438 * 18 17 16 37 37 H 1.08002 * 120.00228 * 180.27390 * 19 18 17 38 38 H 1.07992 * 120.00454 * 179.83402 * 20 19 18 39 39 H 1.08007 * 119.99919 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00699 * 179.97438 * 22 21 20 41 41 H 1.08999 * 117.50187 * 359.97438 * 23 15 14 42 42 H 1.09000 * 117.49839 * 145.02190 * 23 15 14 43 43 H 1.09009 * 117.49935 * 214.97496 * 24 15 14 44 44 H 1.09001 * 117.50195 * 359.97277 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5991 1.9838 0.8370 5 6 3.5410 1.4445 0.1352 6 1 4.1522 1.8870 -0.6375 7 6 4.1339 0.8816 1.2454 8 7 5.4437 0.8839 1.3636 9 14 3.0769 0.1158 2.5816 10 1 2.8583 -1.3212 2.2771 11 1 3.7642 0.2451 3.8916 12 1 1.7677 0.8144 2.6384 13 7 1.6611 2.0959 -1.2599 14 6 0.6285 3.1160 -1.0340 15 6 0.3276 3.8372 -2.3495 16 6 0.3103 2.9529 -3.5979 17 6 0.1245 3.8137 -4.8208 18 6 -1.1487 4.1150 -5.2669 19 6 -1.3191 4.9083 -6.3861 20 6 -0.2163 5.3928 -7.0644 21 6 1.0569 5.0870 -6.6213 22 6 1.2274 4.2974 -5.4996 23 6 0.8445 5.2689 -2.5044 24 6 -0.6504 5.0128 -2.3029 25 1 -0.3633 0.5739 0.8526 26 1 -0.3633 0.4514 -0.9232 27 1 -0.3633 -1.0251 0.0708 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 5.8609 0.4875 2.1445 31 1 2.4675 2.4930 -1.7182 32 1 -0.2794 2.6386 -0.6655 33 1 0.9846 3.8366 -0.2978 34 1 1.2541 2.4128 -3.6737 35 1 -0.5114 2.2402 -3.5270 36 1 -2.0102 3.7333 -4.7394 37 1 -2.3138 5.1474 -6.7321 38 1 -0.3494 6.0103 -7.9404 39 1 1.9186 5.4652 -7.1515 40 1 2.2221 4.0582 -5.1536 41 1 1.3986 5.6971 -1.6691 42 1 1.1725 5.5810 -3.4959 43 1 -1.3059 5.1566 -3.1619 44 1 -1.0798 5.2723 -1.3352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:52 Heat of formation + Delta-G solvation = 42.849377 kcal Electronic energy + Delta-G solvation = -21117.699348 eV Core-core repulsion = 18228.228240 eV Total energy + Delta-G solvation = -2889.471107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88239 -37.78636 -35.93315 -32.31143 -31.90846 -31.27246 -30.92435 -27.97815 -26.81863 -24.35335 -22.94139 -22.38692 -21.80964 -21.48471 -19.71217 -18.69664 -16.93271 -16.64561 -15.61522 -15.35078 -15.17326 -15.06393 -14.05416 -13.95904 -13.46755 -13.43571 -13.04431 -12.82773 -12.74509 -12.56832 -12.35823 -12.08674 -11.73488 -11.60424 -11.40882 -11.24090 -11.00466 -10.92632 -10.76356 -10.66747 -10.31314 -9.97207 -9.79644 -9.33515 -9.30212 -9.04206 -8.89191 -8.66180 -8.59118 -7.41524 -6.12159 -4.12464 1.36277 1.38351 3.26595 3.36559 3.38893 3.77811 3.97969 4.37354 4.79656 4.83605 4.88213 4.97121 5.06567 5.14724 5.16501 5.20890 5.45920 5.49024 5.55906 5.64639 5.82742 5.86313 5.96706 6.03143 6.03906 6.08281 6.10950 6.15463 6.23655 6.30176 6.34806 6.39706 6.47937 6.49980 6.51710 6.66805 6.74211 6.75448 6.96456 7.00884 7.03131 7.41920 7.57573 7.99731 8.37322 8.58655 8.92566 9.50606 11.00585 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.004107 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.039934 B = 6816.213983 C = 7121.365101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.186 3.814 4 H 0.012 0.988 5 C -0.530 4.530 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.266 1.266 13 N -0.675 5.675 14 C 0.098 3.902 15 C -0.107 4.107 16 C -0.037 4.037 17 C -0.069 4.069 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.180 4.180 24 C -0.181 4.181 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.264 0.736 31 H 0.340 0.660 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.230 7.653 -12.468 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.029 0.971 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.227 1.227 12 H -0.191 1.191 13 N -0.306 5.306 14 C -0.032 4.032 15 C -0.107 4.107 16 C -0.074 4.074 17 C -0.069 4.069 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.133 4.133 23 C -0.217 4.217 24 C -0.219 4.219 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.520 7.108 -12.518 19.749 hybrid contribution 0.099 0.305 1.246 1.287 sum -13.422 7.413 -11.272 19.030 Atomic orbital electron populations 1.21805 0.98155 0.99426 1.00988 1.21845 0.93260 0.99652 1.00373 1.19548 0.95288 0.90648 0.86828 0.97059 1.21403 0.89609 1.39108 1.06732 0.90576 1.24965 0.94802 0.95364 0.97907 1.69902 1.09016 1.45178 1.29484 0.86805 0.80583 0.79909 0.80623 1.20419 1.22669 1.19131 1.60603 1.14399 1.30152 1.25465 1.21502 0.96644 0.92975 0.92111 1.21508 1.03838 0.88895 0.96466 1.19989 1.04092 0.95375 0.87951 1.20088 0.92932 0.97356 0.96493 1.21071 0.96884 0.99040 0.96757 1.21099 0.98534 0.98395 0.96046 1.21075 0.92853 1.00887 1.00184 1.21143 0.97120 0.98717 0.96911 1.21161 0.98898 0.97833 0.95385 1.23174 0.96491 0.99111 1.02875 1.23065 0.92945 1.03308 1.02565 0.94408 0.92244 0.94699 0.94042 0.91901 0.92606 0.84209 0.91559 0.95640 0.88994 0.90707 0.86246 0.86528 0.86610 0.86361 0.85804 0.89202 0.88704 0.88740 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.16 37.16 0.34 -2.32 16 2 C -0.11 -2.47 5.10 -26.73 -0.14 -2.61 16 3 C 0.19 4.28 1.77 -68.87 -0.12 4.15 16 4 H 0.01 0.28 6.58 -51.93 -0.34 -0.06 16 5 C -0.53 -14.53 9.19 -34.44 -0.32 -14.84 16 6 H 0.08 2.24 7.59 -52.49 -0.40 1.84 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.89 22.04 24.41 -169.99 -4.15 17.89 16 10 H -0.28 -6.72 6.83 56.52 0.39 -6.33 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 13 N -0.68 -13.01 4.98 -107.95 -0.54 -13.55 16 14 C 0.10 1.63 5.28 -3.82 -0.02 1.61 16 15 C -0.11 -1.48 2.43 -154.51 -0.38 -1.85 16 16 C -0.04 -0.49 5.20 -27.89 -0.14 -0.63 16 17 C -0.07 -0.83 3.69 -104.62 -0.39 -1.21 16 18 C -0.12 -1.32 7.79 -39.58 -0.31 -1.63 16 19 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 20 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 22 C -0.11 -1.35 8.08 -39.58 -0.32 -1.67 16 23 C -0.18 -2.40 9.45 -26.73 -0.25 -2.65 16 24 C -0.18 -2.26 9.57 -26.73 -0.26 -2.51 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.02 7.19 -51.93 -0.37 0.64 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.97 3.21 -51.93 -0.17 0.80 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.34 6.78 7.60 -39.29 -0.30 6.48 16 32 H 0.07 1.10 7.04 -51.93 -0.37 0.73 16 33 H 0.03 0.46 7.86 -51.93 -0.41 0.05 16 34 H 0.09 1.33 7.30 -51.93 -0.38 0.95 16 35 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.12 1.19 7.99 -52.49 -0.42 0.77 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 42 H 0.09 1.24 5.80 -51.93 -0.30 0.94 16 43 H 0.09 1.10 5.82 -51.92 -0.30 0.80 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -28.88 339.38 -9.55 -38.43 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.16 Total: 7.78 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -3.59 Total: -29.24 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.24 Total: -39.99 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.15 Total: 17.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.88 -9.55 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.282 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds