Wall clock time and date at job start Mon Mar 30 2020 20:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47136 * 2 1 4 4 H 1.09008 * 109.47181 * 305.78978 * 3 2 1 5 5 C 1.50701 * 109.46973 * 185.79280 * 3 2 1 6 6 H 1.08005 * 120.00131 * 239.99988 * 5 3 2 7 7 C 1.37880 * 120.00372 * 59.99819 * 5 3 2 8 8 N 1.31518 * 119.99397 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00320 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47285 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47266 * 300.00199 * 9 7 5 12 12 H 1.48504 * 109.47188 * 59.99925 * 9 7 5 13 13 N 1.46900 * 109.47522 * 65.79206 * 3 2 1 14 14 C 1.46897 * 110.99770 * 257.19751 * 13 3 2 15 15 H 1.09007 * 109.25323 * 39.63670 * 14 13 3 16 16 C 1.52732 * 109.25374 * 280.16770 * 14 13 3 17 17 C 1.53318 * 108.39557 * 188.58448 * 16 14 13 18 18 C 1.52733 * 108.34808 * 69.91758 * 17 16 14 19 19 C 1.50635 * 110.58867 * 308.87096 * 18 17 16 20 20 C 1.38912 * 117.74916 * 197.45216 * 19 18 17 21 21 C 1.37936 * 120.54192 * 180.61190 * 20 19 18 22 22 C 1.38263 * 119.76744 * 359.95088 * 21 20 19 23 23 C 1.50702 * 120.11085 * 179.85549 * 22 21 20 24 24 C 1.37930 * 119.77596 * 359.88472 * 22 21 20 25 25 C 1.37657 * 122.56300 * 17.79992 * 19 18 17 26 26 H 1.09000 * 109.47303 * 180.37385 * 1 2 3 27 27 H 1.08995 * 109.47447 * 300.37433 * 1 2 3 28 28 H 1.09003 * 109.46683 * 60.37700 * 1 2 3 29 29 H 1.09001 * 109.46862 * 239.99556 * 2 1 3 30 30 H 1.09005 * 109.46815 * 120.00033 * 2 1 3 31 31 H 0.96998 * 119.99376 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99714 * 21.14536 * 13 3 2 33 33 H 1.09007 * 109.67855 * 308.33971 * 16 14 13 34 34 H 1.08994 * 109.68398 * 68.89660 * 16 14 13 35 35 H 1.08991 * 109.71126 * 310.19548 * 17 16 14 36 36 H 1.09008 * 109.71493 * 189.63572 * 17 16 14 37 37 H 1.09001 * 109.25200 * 188.59043 * 18 17 16 38 38 H 1.09001 * 109.25815 * 69.16163 * 18 17 16 39 39 H 1.08003 * 119.73243 * 0.58975 * 20 19 18 40 40 H 1.07993 * 120.11481 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47477 * 265.04096 * 23 22 21 42 42 H 1.08996 * 109.47109 * 25.04702 * 23 22 21 43 43 H 1.09006 * 109.46782 * 145.03915 * 23 22 21 44 44 H 1.08005 * 119.72379 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5945 1.9854 -0.8337 5 6 3.5402 1.4448 -0.1434 6 1 4.1556 1.8858 0.6268 7 6 4.1272 0.8840 -1.2579 8 7 3.3777 0.3474 -2.1960 9 14 5.9866 0.8876 -1.4359 10 1 6.3629 0.2288 -2.7125 11 1 6.4811 2.2878 -1.4363 12 1 6.5941 0.1484 -0.3002 13 7 1.6679 2.0935 1.2632 14 6 0.5192 2.9896 1.0750 15 1 -0.1934 2.5226 0.3951 16 6 1.0018 4.3071 0.4717 17 6 -0.1656 5.3010 0.4833 18 6 -0.4466 5.6956 1.9318 19 6 -0.5970 4.4702 2.7950 20 6 -1.2102 4.6219 4.0322 21 6 -1.3664 3.5407 4.8743 22 6 -0.9102 2.2952 4.4842 23 6 -1.0739 1.1092 5.3995 24 6 -0.3040 2.1419 3.2547 25 6 -0.1469 3.2292 2.4047 26 1 -0.3634 -1.0276 0.0067 27 1 -0.3634 0.5196 0.8866 28 1 -0.3633 0.5080 -0.8934 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7906 -0.0468 -2.9802 32 1 1.4791 1.4095 1.9805 33 1 1.8267 4.7021 1.0648 34 1 1.3323 4.1421 -0.5538 35 1 -1.0506 4.8336 0.0518 36 1 0.1000 6.1869 -0.0936 37 1 -1.3661 6.2794 1.9733 38 1 0.3795 6.3000 2.3065 39 1 -1.5673 5.5944 4.3374 40 1 -1.8438 3.6665 5.8348 41 1 -0.1636 0.9722 5.9832 42 1 -1.9141 1.2826 6.0719 43 1 -1.2626 0.2151 4.8054 44 1 0.0517 1.1685 2.9507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:10 Heat of formation + Delta-G solvation = -12.685194 kcal Electronic energy + Delta-G solvation = -21735.262161 eV Core-core repulsion = 18843.382894 eV Total energy + Delta-G solvation = -2891.879267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21700 -38.44502 -36.83542 -34.66082 -33.22889 -32.53698 -31.21370 -29.53852 -28.22823 -27.06531 -24.86544 -23.85981 -22.94393 -22.34592 -21.45420 -19.98671 -18.37714 -17.33334 -16.80404 -16.60663 -16.06311 -15.93767 -15.34916 -15.06166 -14.81009 -14.54942 -14.47930 -14.34844 -13.77139 -13.57288 -13.50971 -13.29904 -13.11274 -12.87975 -12.82235 -12.65634 -12.51581 -12.29778 -12.15344 -11.93419 -11.78890 -11.74733 -11.65019 -11.40490 -11.06795 -10.95162 -10.41340 -9.67540 -9.26923 -8.83098 -8.05699 -6.16582 0.49712 0.52546 1.42212 1.43446 1.51341 2.44865 2.84741 3.20041 3.64613 3.75544 3.81577 4.05381 4.12052 4.17557 4.28311 4.38571 4.38912 4.45720 4.50610 4.56432 4.63239 4.65253 4.76728 4.85119 4.86168 4.97525 4.99824 5.03896 5.04174 5.10150 5.19342 5.21688 5.27696 5.35372 5.42515 5.45154 5.56157 5.62437 5.74043 5.75660 5.85021 5.88173 6.20464 6.35560 6.70424 6.87172 6.97014 7.52549 8.97790 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.005381 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.821013 B = 5202.108946 C = 5809.842114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.228 3.772 4 H -0.002 1.002 5 C -0.510 4.510 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.284 1.284 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.130 3.870 15 H 0.031 0.969 16 C -0.102 4.102 17 C -0.113 4.113 18 C -0.073 4.073 19 C -0.091 4.091 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.111 4.111 24 C -0.136 4.136 25 C -0.079 4.079 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 7.255 12.392 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.120 3.880 4 H 0.016 0.984 5 C -0.549 4.549 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.209 1.209 11 H -0.201 1.201 12 H -0.199 1.199 13 N -0.313 5.313 14 C 0.021 3.979 15 H 0.049 0.951 16 C -0.140 4.140 17 C -0.151 4.151 18 C -0.110 4.110 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.097 4.097 23 C -0.167 4.167 24 C -0.154 4.154 25 C -0.080 4.080 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.372 7.655 12.151 18.318 hybrid contribution 0.626 -1.136 -0.833 1.541 sum -10.746 6.519 11.318 16.913 Atomic orbital electron populations 1.21779 0.96698 1.00859 1.00123 1.22045 0.93999 1.00691 1.01288 1.18932 0.93902 0.89207 0.85981 0.98441 1.21483 0.92905 1.36062 1.04414 0.93331 1.25658 1.02158 0.95327 0.95607 1.69994 1.36215 1.40112 1.09805 0.85658 0.80892 0.78150 0.77154 1.20914 1.20117 1.19904 1.60873 1.36588 1.24102 1.09757 1.20301 0.90400 0.94513 0.92724 0.95132 1.21467 0.98396 0.94724 0.99457 1.21535 0.97362 0.98948 0.97223 1.20485 1.03188 0.94299 0.93025 1.19856 0.98857 0.94108 0.96319 1.21413 0.99127 1.00045 0.93072 1.21263 1.00748 0.91850 1.00557 1.20094 0.98058 0.96808 0.94720 1.20806 1.03043 0.94661 0.98231 1.21068 1.00960 0.98243 0.95173 1.19733 0.98629 0.94009 0.95591 0.92503 0.93311 0.94574 0.91174 0.94785 0.93119 0.85225 0.92386 0.94238 0.92172 0.89818 0.88500 0.90127 0.83500 0.83496 0.90802 0.89733 0.91780 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.86 71.98 0.64 -4.83 16 2 C -0.14 -6.79 5.09 30.59 0.16 -6.63 16 3 C 0.23 11.73 1.93 44.17 0.09 11.81 16 4 H 0.00 -0.13 6.89 -2.38 -0.02 -0.15 16 5 C -0.51 -29.10 8.84 25.60 0.23 -28.88 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.59 5.29 84.65 0.45 1.03 16 8 N -0.92 -53.74 11.29 21.45 0.24 -53.49 16 9 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 13 N -0.68 -30.16 5.84 -477.72 -2.79 -32.95 16 14 C 0.13 4.99 1.66 44.06 0.07 5.06 16 15 H 0.03 1.26 6.29 -2.38 -0.02 1.25 16 16 C -0.10 -3.75 5.31 30.61 0.16 -3.59 16 17 C -0.11 -3.05 5.98 30.61 0.18 -2.86 16 18 C -0.07 -1.69 5.67 29.74 0.17 -1.52 16 19 C -0.09 -2.49 5.74 -19.86 -0.11 -2.61 16 20 C -0.12 -2.66 9.61 22.36 0.21 -2.44 16 21 C -0.13 -2.74 9.69 22.20 0.22 -2.53 16 22 C -0.10 -2.43 5.87 -19.93 -0.12 -2.55 16 23 C -0.11 -2.12 10.02 71.24 0.71 -1.41 16 24 C -0.14 -4.22 8.56 22.36 0.19 -4.02 16 25 C -0.08 -2.61 5.55 -19.86 -0.11 -2.72 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 1.79 5.70 -2.39 -0.01 1.78 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 3.84 5.94 -2.39 -0.01 3.83 16 30 H 0.03 1.60 8.02 -2.38 -0.02 1.58 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.33 13.82 5.31 -89.69 -0.48 13.34 16 33 H 0.06 2.24 8.10 -2.38 -0.02 2.22 16 34 H 0.04 1.64 7.51 -2.39 -0.02 1.62 16 35 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.10 1.69 8.13 -2.39 -0.02 1.67 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.15 2.34 8.05 -2.91 -0.02 2.32 16 40 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 43 H 0.06 1.23 8.12 -2.38 -0.02 1.22 16 44 H 0.11 3.50 5.72 -2.91 -0.02 3.48 16 Total: -1.00 -63.32 336.49 3.11 -60.21 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.50 Total: 27.81 kcal Atomic # 6 Polarization: -51.80 SS G_CDS: 3.13 Total: -48.67 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -2.55 Total: -86.44 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.32 3.11 -60.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.525 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds