Wall clock time and date at job start Mon Mar 30 2020 20:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 H 1.08994 * 109.47191 * 54.99530 * 3 2 1 5 5 C 1.50698 * 109.47351 * 174.99754 * 3 2 1 6 6 H 1.08003 * 119.99932 * 119.99521 * 5 3 2 7 7 C 1.37872 * 120.00308 * 299.99936 * 5 3 2 8 8 N 1.31514 * 119.99875 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00511 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46942 * 89.99778 * 9 7 5 11 11 H 1.48497 * 109.47558 * 209.99991 * 9 7 5 12 12 H 1.48506 * 109.46883 * 330.00213 * 9 7 5 13 13 N 1.46902 * 109.46692 * 294.99750 * 3 2 1 14 14 C 1.46843 * 110.99886 * 175.00166 * 13 3 2 15 15 C 1.53042 * 109.52496 * 185.84170 * 14 13 3 16 16 C 1.53121 * 109.27380 * 300.81467 * 15 14 13 17 17 C 1.50702 * 109.52363 * 177.55837 * 16 15 14 18 18 C 1.38234 * 119.99895 * 299.73111 * 17 16 15 19 19 C 1.38240 * 120.00062 * 180.32314 * 18 17 16 20 20 C 1.38234 * 119.99686 * 359.92348 * 19 18 17 21 21 C 1.38234 * 120.00244 * 0.07174 * 20 19 18 22 22 C 1.38230 * 119.99864 * 359.95693 * 21 20 19 23 23 C 1.53129 * 109.15909 * 57.65762 * 16 15 14 24 24 C 1.46854 * 111.00003 * 299.20849 * 13 3 2 25 25 H 1.08994 * 109.47542 * 300.00366 * 1 2 3 26 26 H 1.09002 * 109.47035 * 60.00494 * 1 2 3 27 27 H 1.08998 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47784 * 240.00028 * 2 1 3 29 29 H 1.08996 * 109.47477 * 119.99479 * 2 1 3 30 30 H 0.97000 * 120.00315 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46805 * 65.82230 * 14 13 3 32 32 H 1.09006 * 109.46274 * 305.85275 * 14 13 3 33 33 H 1.08998 * 109.50584 * 180.88391 * 15 14 13 34 34 H 1.08991 * 109.50629 * 60.75701 * 15 14 13 35 35 H 1.08993 * 109.52622 * 297.68724 * 16 15 14 36 36 H 1.08001 * 120.00279 * 0.27436 * 18 17 16 37 37 H 1.07997 * 119.99831 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.99747 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00356 * 179.97438 * 22 21 20 41 41 H 1.08993 * 109.50047 * 62.28408 * 23 16 15 42 42 H 1.08998 * 109.49774 * 182.40158 * 23 16 15 43 43 H 1.09004 * 109.46327 * 294.17658 * 24 13 3 44 44 H 1.08995 * 109.46125 * 54.14529 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3377 2.1734 9 14 6.0049 0.8802 1.3813 10 1 6.4426 2.1132 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8397 0.0271 13 7 1.6513 2.0992 -1.2553 14 6 2.0206 3.5204 -1.2420 15 6 1.4734 4.2028 -2.4978 16 6 2.0526 3.5175 -3.7385 17 6 1.4712 4.1461 -4.9787 18 6 0.1060 4.1160 -5.1938 19 6 -0.4267 4.6867 -6.3346 20 6 0.4057 5.2889 -7.2595 21 6 1.7709 5.3190 -7.0444 22 6 2.3035 4.7478 -5.9039 23 6 1.6948 2.0290 -3.7035 24 6 2.2356 1.4096 -2.4128 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8292 -0.0608 2.9500 31 1 3.1064 3.6134 -1.2220 32 1 1.5991 3.9969 -0.3568 33 1 1.7611 5.2542 -2.4953 34 1 0.3866 4.1223 -2.5115 35 1 3.1364 3.6325 -3.7457 36 1 -0.5444 3.6459 -4.4710 37 1 -1.4932 4.6628 -6.5028 38 1 -0.0105 5.7351 -8.1506 39 1 2.4212 5.7891 -7.7672 40 1 3.3702 4.7710 -5.7359 41 1 0.6114 1.9143 -3.7362 42 1 2.1406 1.5274 -4.5624 43 1 3.3204 1.5125 -2.3873 44 1 1.9702 0.3531 -2.3780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:00 Heat of formation + Delta-G solvation = 9.613234 kcal Electronic energy + Delta-G solvation = -21489.854462 eV Core-core repulsion = 18598.942128 eV Total energy + Delta-G solvation = -2890.912334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.67819 -38.02613 -34.99527 -32.38298 -31.28558 -30.86335 -30.13309 -29.21079 -26.38840 -24.09237 -22.82701 -22.60379 -22.23900 -20.97415 -19.35172 -18.75633 -16.84878 -16.29911 -15.45326 -15.08860 -14.80669 -14.26215 -14.01543 -13.67437 -13.38056 -13.37690 -13.13192 -12.96020 -12.58400 -12.38969 -12.03070 -11.64606 -11.48298 -11.19039 -11.13384 -11.09097 -10.85562 -10.64272 -10.54408 -10.30641 -10.22521 -10.09477 -9.65368 -9.61226 -9.23106 -9.04708 -8.87970 -8.54656 -8.33880 -7.06616 -5.96892 -4.10568 1.42306 1.44020 3.26530 3.34096 3.36659 3.83995 4.40243 4.80703 4.89681 5.01110 5.09216 5.15613 5.26517 5.35568 5.41574 5.54649 5.61118 5.69166 5.88815 6.05527 6.10485 6.11737 6.20398 6.24111 6.33704 6.40940 6.41728 6.48894 6.52751 6.54811 6.60970 6.67808 6.72407 6.82083 6.82307 6.98253 7.07037 7.13612 7.22731 7.37868 7.64636 7.78755 8.02169 8.19562 8.37584 8.51366 9.00223 9.56941 11.01712 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.004526 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.483497 B = 6185.217955 C = 6860.565158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.532 5.532 14 C 0.064 3.936 15 C -0.104 4.104 16 C -0.050 4.050 17 C -0.063 4.063 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.105 4.105 24 C 0.060 3.940 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.261 0.739 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 6.958 -14.225 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.257 5.257 14 C -0.065 4.065 15 C -0.142 4.142 16 C -0.069 4.069 17 C -0.063 4.063 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.068 4.068 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.724 6.827 -14.073 16.656 hybrid contribution 2.043 0.053 0.208 2.054 sum -3.681 6.880 -13.865 15.910 Atomic orbital electron populations 1.21703 0.98866 0.98351 1.00587 1.21629 0.92250 0.99277 1.01938 1.19266 0.92956 0.91125 0.85934 0.94434 1.21746 0.92960 1.37937 1.05385 0.92668 1.24901 0.97688 0.95087 0.95732 1.69873 1.34724 1.38401 1.09415 0.86708 0.86381 0.77536 0.78046 1.20764 1.21202 1.20100 1.62400 1.58144 1.01040 1.04095 1.21827 0.98344 0.90333 0.95967 1.21668 1.00754 0.97929 0.93844 1.20276 0.99590 0.95569 0.91450 1.20071 0.93588 0.96688 0.95917 1.21088 0.94960 0.99555 0.97443 1.21133 0.99551 0.98586 0.94629 1.21068 0.93816 1.00824 0.99476 1.21091 0.95270 1.00063 0.97568 1.21113 0.99643 0.98859 0.94359 1.21688 1.01335 0.93452 0.97812 1.21918 0.97168 0.98294 0.89453 0.94240 0.93379 0.95682 0.94818 0.89024 0.92940 0.94680 0.91823 0.92666 0.91635 0.91019 0.85825 0.86407 0.86620 0.86516 0.86337 0.91678 0.92724 0.94668 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.15 0.36 -2.42 16 2 C -0.11 -2.63 5.06 -26.73 -0.14 -2.77 16 3 C 0.21 5.17 1.75 -68.86 -0.12 5.05 16 4 H 0.04 1.02 8.08 -51.93 -0.42 0.60 16 5 C -0.54 -14.26 7.19 -34.44 -0.25 -14.51 16 6 H 0.06 1.47 5.84 -52.48 -0.31 1.16 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.53 -10.91 4.10 -228.07 -0.93 -11.84 16 14 C 0.06 1.22 5.12 -3.83 -0.02 1.20 16 15 C -0.10 -1.60 5.23 -26.65 -0.14 -1.74 16 16 C -0.05 -0.74 2.43 -91.64 -0.22 -0.96 16 17 C -0.06 -0.83 4.79 -104.62 -0.50 -1.33 16 18 C -0.11 -1.41 8.66 -39.58 -0.34 -1.75 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 21 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 22 C -0.12 -1.49 9.67 -39.59 -0.38 -1.87 16 23 C -0.10 -1.63 5.22 -26.65 -0.14 -1.77 16 24 C 0.06 1.15 4.80 -3.83 -0.02 1.13 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.03 0.77 6.05 -51.93 -0.31 0.46 16 29 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.03 0.73 6.96 -51.93 -0.36 0.36 16 32 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.00 7.33 -51.93 -0.38 0.62 16 35 H 0.07 1.08 7.88 -51.93 -0.41 0.68 16 36 H 0.12 1.51 7.06 -52.49 -0.37 1.14 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.32 7.95 -52.49 -0.42 0.91 16 41 H 0.06 1.00 7.29 -51.93 -0.38 0.62 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.74 6.63 -51.93 -0.34 0.39 16 44 H 0.07 1.41 5.93 -51.93 -0.31 1.10 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -27.21 335.23 -10.71 -37.91 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.24 Total: 2.25 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -3.19 Total: -25.28 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.31 Total: -35.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.21 -10.71 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.525 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds