Wall clock time and date at job start Mon Mar 30 2020 20:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 H 1.08994 * 109.47072 * 182.36687 * 3 2 1 5 5 C 1.50700 * 109.47023 * 62.36815 * 3 2 1 6 6 H 1.08005 * 119.99969 * 244.30823 * 5 3 2 7 7 C 1.37866 * 120.00184 * 64.31103 * 5 3 2 8 8 N 1.31517 * 120.00402 * 9.21261 * 7 5 3 9 9 Si 1.86808 * 120.00315 * 188.93807 * 7 5 3 10 10 H 1.48507 * 109.46644 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47205 * 119.99632 * 9 7 5 12 12 H 1.48502 * 109.47232 * 239.99946 * 9 7 5 13 13 N 1.46906 * 109.46740 * 302.36995 * 3 2 1 14 14 C 1.46842 * 110.99667 * 300.68803 * 13 3 2 15 15 C 1.53043 * 109.51981 * 174.16148 * 14 13 3 16 16 C 1.53128 * 109.27497 * 59.18398 * 15 14 13 17 17 C 1.50702 * 109.51947 * 182.44110 * 16 15 14 18 18 C 1.38227 * 120.00341 * 59.40660 * 17 16 15 19 19 C 1.38235 * 120.00404 * 179.76471 * 18 17 16 20 20 C 1.38243 * 119.99564 * 0.48675 * 19 18 17 21 21 C 1.38234 * 119.99737 * 359.79245 * 20 19 18 22 22 C 1.38233 * 120.00385 * 359.95167 * 21 20 19 23 23 C 1.53116 * 109.15923 * 302.34209 * 16 15 14 24 24 C 1.46845 * 110.99573 * 176.48385 * 13 3 2 25 25 H 1.09000 * 109.47053 * 304.44110 * 1 2 3 26 26 H 1.08997 * 109.47067 * 64.44365 * 1 2 3 27 27 H 1.08999 * 109.46784 * 184.44903 * 1 2 3 28 28 H 1.09000 * 109.47373 * 239.99915 * 2 1 3 29 29 H 1.08996 * 109.47372 * 119.99650 * 2 1 3 30 30 H 0.97004 * 119.99630 * 2.99430 * 8 7 5 31 31 H 1.09003 * 109.46977 * 294.18020 * 14 13 3 32 32 H 1.09001 * 109.46369 * 54.15516 * 14 13 3 33 33 H 1.08993 * 109.50395 * 299.24331 * 15 14 13 34 34 H 1.09001 * 109.50363 * 179.12078 * 15 14 13 35 35 H 1.08999 * 109.51963 * 62.24909 * 16 15 14 36 36 H 1.08004 * 119.99848 * 359.97438 * 18 17 16 37 37 H 1.07999 * 120.00521 * 180.25542 * 19 18 17 38 38 H 1.07994 * 119.99839 * 179.76707 * 20 19 18 39 39 H 1.08003 * 119.99442 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.99910 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.50453 * 297.71390 * 23 16 15 42 42 H 1.08995 * 109.50341 * 177.59539 * 23 16 15 43 43 H 1.09005 * 109.46339 * 305.85171 * 24 13 3 44 44 H 1.08998 * 109.46837 * 65.82129 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 -0.0424 5 6 1.5862 2.1358 1.2588 6 1 0.9061 2.9727 1.1992 7 6 2.0392 1.7018 2.4864 8 7 3.0011 0.8075 2.5539 9 14 1.2920 2.3896 4.0543 10 1 0.2398 3.3789 3.7086 11 1 0.6922 1.2837 4.8434 12 1 2.3503 3.0534 4.8573 13 7 1.5041 2.1513 -1.1698 14 6 1.9133 1.4929 -2.4170 15 6 1.2211 2.1686 -3.6029 16 6 1.6062 3.6503 -3.6359 17 6 0.8806 4.3341 -4.7659 18 6 -0.5013 4.3378 -4.7981 19 6 -1.1670 4.9693 -5.8320 20 6 -0.4505 5.5885 -6.8392 21 6 0.9315 5.5798 -6.8100 22 6 1.5971 4.9528 -5.7732 23 6 1.2130 4.3014 -2.3070 24 6 1.9054 3.5638 -1.1586 25 1 -0.3633 0.5812 0.8475 26 1 -0.3633 0.4433 -0.9271 27 1 -0.3633 -1.0246 0.0797 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4217 0.4854 1.7412 31 1 2.9941 1.5741 -2.5329 32 1 1.6299 0.4410 -2.3823 33 1 0.1405 2.0758 -3.4947 34 1 1.5371 1.6898 -4.5298 35 1 2.6822 3.7437 -3.7831 36 1 -1.0610 3.8503 -4.0136 37 1 -2.2467 4.9758 -5.8550 38 1 -0.9704 6.0786 -7.6489 39 1 1.4913 6.0631 -7.5971 40 1 2.6769 4.9457 -5.7507 41 1 0.1323 4.2421 -2.1784 42 1 1.5232 5.3462 -2.3079 43 1 1.6163 4.0160 -0.2099 44 1 2.9862 3.6353 -1.2804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:03 Heat of formation + Delta-G solvation = 8.487809 kcal Electronic energy + Delta-G solvation = -21499.714191 eV Core-core repulsion = 18608.753054 eV Total energy + Delta-G solvation = -2890.961137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.76029 -38.15215 -35.29663 -32.62045 -31.20733 -30.91543 -30.24338 -29.20631 -25.96345 -24.15107 -23.28237 -22.64257 -22.21556 -21.08800 -19.50247 -18.87762 -16.92518 -16.69379 -15.51494 -15.19271 -14.64359 -14.24723 -13.86839 -13.72841 -13.69966 -13.45896 -13.34745 -13.16582 -12.60700 -12.50188 -12.15370 -11.79753 -11.44960 -11.34743 -11.20852 -11.00166 -10.77941 -10.70957 -10.49676 -10.38223 -10.14828 -10.09963 -9.91874 -9.76234 -9.46449 -8.93079 -8.63004 -8.39467 -8.32395 -7.20070 -6.31775 -4.00940 1.36616 1.38962 3.45677 3.48245 3.62177 3.78477 4.52680 4.71589 4.82585 4.90317 4.96449 5.09652 5.23658 5.29863 5.39511 5.47690 5.54113 5.59053 5.72398 5.90199 5.99188 6.02568 6.05544 6.12702 6.19086 6.23339 6.28397 6.37616 6.42759 6.46356 6.49432 6.51237 6.54271 6.67434 6.78160 6.82518 6.93284 7.01360 7.13040 7.22026 7.41805 7.52460 7.94338 8.09394 8.43076 8.64062 8.90861 9.67923 11.04405 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.029887 B = 0.004196 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.637731 B = 6671.602519 C = 6913.251969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.205 3.795 4 H -0.014 1.014 5 C -0.579 4.579 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.521 5.521 14 C 0.050 3.950 15 C -0.102 4.102 16 C -0.051 4.051 17 C -0.064 4.064 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.105 4.105 24 C 0.066 3.934 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.018 0.982 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.270 0.730 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 6.633 -15.936 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.152 4.152 3 C 0.098 3.902 4 H 0.004 0.996 5 C -0.617 4.617 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.896 3.104 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.246 5.246 14 C -0.079 4.079 15 C -0.140 4.140 16 C -0.069 4.069 17 C -0.064 4.064 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.063 4.063 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.250 6.501 -14.243 16.513 hybrid contribution 0.945 0.116 -1.801 2.038 sum -4.305 6.617 -16.044 17.881 Atomic orbital electron populations 1.21432 0.96298 0.97911 1.02061 1.21609 0.96426 0.98266 0.98906 1.19361 0.91783 0.90772 0.88268 0.99618 1.21871 1.30706 1.18049 0.91070 0.92439 1.25678 0.95378 0.95617 1.01614 1.70736 1.22266 1.29607 1.32405 0.83576 0.75661 0.75852 0.75270 1.21452 1.21351 1.21696 1.61933 1.59905 1.01305 1.01426 1.22095 0.96166 0.98851 0.90761 1.21620 1.01419 0.93569 0.97358 1.20287 0.98742 0.95132 0.92771 1.20021 0.93858 0.96923 0.95602 1.21097 0.94066 0.99330 0.98484 1.21147 0.99735 0.98206 0.94721 1.21084 0.94286 1.00683 0.99010 1.21092 0.94562 0.99867 0.98463 1.21096 0.99712 0.98672 0.94505 1.21687 1.01503 0.98028 0.93056 1.21938 0.95807 0.89926 0.98582 0.91865 0.93582 0.96292 0.96028 0.91768 0.91927 0.96478 0.90893 0.91209 0.92548 0.91183 0.85777 0.86321 0.86544 0.86468 0.86382 0.91278 0.92459 0.89275 0.96629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.52 37.16 0.35 -2.20 16 2 C -0.11 -2.62 4.95 -26.73 -0.13 -2.75 16 3 C 0.20 4.98 1.39 -68.86 -0.10 4.89 16 4 H -0.01 -0.37 7.47 -51.93 -0.39 -0.76 16 5 C -0.58 -15.41 6.46 -34.44 -0.22 -15.63 16 6 H 0.06 1.56 6.65 -52.48 -0.35 1.21 16 7 C 0.02 0.58 5.18 -17.82 -0.09 0.49 16 8 N -0.91 -26.76 12.86 55.43 0.71 -26.05 16 9 Si 1.07 24.89 29.91 -169.99 -5.08 19.80 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.52 -10.76 3.74 -228.07 -0.85 -11.61 16 14 C 0.05 0.89 5.20 -3.83 -0.02 0.87 16 15 C -0.10 -1.51 5.22 -26.64 -0.14 -1.65 16 16 C -0.05 -0.72 2.43 -91.64 -0.22 -0.94 16 17 C -0.06 -0.83 4.79 -104.62 -0.50 -1.33 16 18 C -0.11 -1.39 8.66 -39.59 -0.34 -1.73 16 19 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 20 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 21 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 22 C -0.12 -1.44 9.67 -39.58 -0.38 -1.82 16 23 C -0.10 -1.64 5.23 -26.65 -0.14 -1.78 16 24 C 0.07 1.28 5.22 -3.83 -0.02 1.26 16 25 H 0.06 1.47 7.15 -51.93 -0.37 1.10 16 26 H 0.05 0.93 7.69 -51.93 -0.40 0.53 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.45 6.40 -51.93 -0.33 0.12 16 29 H 0.06 1.64 6.36 -51.93 -0.33 1.31 16 30 H 0.27 7.92 6.22 -40.82 -0.25 7.66 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 1.32 6.04 -51.93 -0.31 1.01 16 33 H 0.07 1.05 7.28 -51.93 -0.38 0.67 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 36 H 0.12 1.53 7.06 -52.48 -0.37 1.16 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.12 1.24 7.95 -52.49 -0.42 0.83 16 41 H 0.07 1.10 7.34 -51.93 -0.38 0.72 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.91 6.15 -51.93 -0.32 1.60 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -28.45 334.41 -10.53 -38.98 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.19 Total: 1.33 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -3.15 Total: -27.49 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.14 Total: -37.66 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.45 -10.53 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.465 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds