Wall clock time and date at job start Mon Mar 30 2020 20:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47579 * 2 1 4 4 H 1.08996 * 109.47056 * 67.80908 * 3 2 1 5 5 C 1.50700 * 109.47706 * 187.81667 * 3 2 1 6 6 H 1.07998 * 120.00262 * 156.44456 * 5 3 2 7 7 C 1.37877 * 119.99456 * 336.44195 * 5 3 2 8 8 N 1.31513 * 120.00213 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99588 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47323 * 90.00329 * 9 7 5 11 11 H 1.48503 * 109.46973 * 209.99885 * 9 7 5 12 12 H 1.48495 * 109.47429 * 330.00193 * 9 7 5 13 13 N 1.46904 * 109.46706 * 307.81833 * 3 2 1 14 14 C 1.47153 * 111.02402 * 318.33248 * 13 3 2 15 15 C 1.52894 * 108.47900 * 307.86007 * 14 13 3 16 16 C 1.50717 * 109.95331 * 309.58149 * 15 14 13 17 17 C 1.38684 * 118.48369 * 196.69591 * 16 15 14 18 18 C 1.38023 * 120.34565 * 180.41643 * 17 16 15 19 19 C 1.38269 * 119.83095 * 359.97438 * 18 17 16 20 20 C 1.38013 * 119.86388 * 359.91521 * 19 18 17 21 21 C 1.37834 * 121.66294 * 16.96299 * 16 15 14 22 22 C 1.46627 * 110.99886 * 195.31929 * 13 3 2 23 23 H 1.09003 * 109.27050 * 191.12502 * 22 13 3 24 24 C 1.53006 * 109.26934 * 310.63266 * 22 13 3 25 25 C 1.52998 * 109.46943 * 313.32214 * 24 22 13 26 26 H 1.09000 * 109.47210 * 304.69300 * 1 2 3 27 27 H 1.08997 * 109.47550 * 64.70229 * 1 2 3 28 28 H 1.09010 * 109.47022 * 184.70223 * 1 2 3 29 29 H 1.09002 * 109.47006 * 239.99280 * 2 1 3 30 30 H 1.09009 * 109.47200 * 120.00008 * 2 1 3 31 31 H 0.97006 * 119.99927 * 179.97438 * 8 7 5 32 32 H 1.08990 * 109.65491 * 188.15236 * 14 13 3 33 33 H 1.09010 * 109.79711 * 67.64594 * 14 13 3 34 34 H 1.09000 * 109.38598 * 189.43543 * 15 14 13 35 35 H 1.09001 * 109.30969 * 69.68505 * 15 14 13 36 36 H 1.08002 * 119.82339 * 0.42706 * 17 16 15 37 37 H 1.08006 * 120.08518 * 179.97438 * 18 17 16 38 38 H 1.07996 * 120.06637 * 179.90274 * 19 18 17 39 39 H 1.08000 * 119.80422 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.47167 * 193.32215 * 24 22 13 41 41 H 1.09003 * 109.46865 * 73.31931 * 24 22 13 42 42 H 1.08993 * 109.47696 * 59.99495 * 25 24 22 43 43 H 1.08998 * 109.47146 * 180.02562 * 25 24 22 44 44 H 1.09003 * 109.47109 * 299.99567 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7953 1.9144 0.9515 5 6 3.5346 1.4469 -0.1932 6 1 4.0247 2.3218 -0.5939 7 6 4.2762 0.3338 0.1416 8 7 3.6793 -0.7319 0.6291 9 14 6.1288 0.3395 -0.0972 10 1 6.7855 0.8415 1.1365 11 1 6.5958 -1.0417 -0.3796 12 1 6.4782 1.2231 -1.2384 13 7 1.4026 2.1871 -1.0941 14 6 1.3334 1.3721 -2.3174 15 6 2.7311 0.8303 -2.6185 16 6 3.7353 1.9538 -2.5901 17 6 4.9769 1.7460 -3.1720 18 6 5.9286 2.7456 -3.1603 19 6 5.6425 3.9608 -2.5658 20 6 4.4064 4.1692 -1.9884 21 6 3.4486 3.1658 -1.9995 22 6 2.1133 3.4419 -1.3597 23 1 1.5146 4.0598 -2.0289 24 6 2.3297 4.1883 -0.0417 25 6 1.0249 4.2013 0.7572 26 1 -0.3633 0.5849 0.8449 27 1 -0.3634 0.4391 -0.9291 28 1 -0.3633 -1.0243 0.0843 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 4.2011 -1.5151 0.8643 32 1 0.9923 1.9879 -3.1494 33 1 0.6428 0.5417 -2.1692 34 1 2.7346 0.3666 -3.6049 35 1 2.9987 0.0865 -1.8680 36 1 5.2001 0.7971 -3.6369 37 1 6.8943 2.5791 -3.6145 38 1 6.3849 4.7450 -2.5531 39 1 4.1839 5.1189 -1.5246 40 1 2.6381 5.2126 -0.2506 41 1 3.1051 3.6862 0.5371 42 1 0.7165 3.1770 0.9661 43 1 1.1789 4.7334 1.6959 44 1 0.2496 4.7033 0.1784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:49 Heat of formation + Delta-G solvation = 79.036378 kcal Electronic energy + Delta-G solvation = -23800.457045 eV Core-core repulsion = 20912.555124 eV Total energy + Delta-G solvation = -2887.901921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64820 -37.03560 -34.25523 -32.88796 -31.58696 -30.23737 -29.40598 -28.09768 -26.87627 -24.30159 -23.00083 -22.26103 -21.75227 -20.13530 -19.62325 -17.97903 -16.63348 -15.89380 -15.41982 -15.01542 -14.41252 -14.22810 -13.85311 -13.15776 -12.95157 -12.81653 -12.74053 -12.31850 -12.11306 -11.74053 -11.61804 -11.35502 -11.10813 -11.03813 -10.98843 -10.74569 -10.67756 -10.54394 -10.39852 -10.17480 -9.89428 -9.75342 -9.63294 -9.43640 -9.02699 -8.77716 -8.40025 -7.80460 -7.28889 -6.91256 -5.71491 -4.02279 2.22076 2.27725 3.30089 3.39359 3.51719 4.44797 4.58270 5.07555 5.30872 5.53799 5.61081 5.67030 5.71934 5.78305 5.92375 6.05749 6.13114 6.23284 6.23738 6.32127 6.35655 6.44368 6.47705 6.52610 6.58650 6.60993 6.70007 6.80647 6.84603 6.89661 7.00115 7.11206 7.18670 7.21922 7.26136 7.31020 7.34990 7.50371 7.57746 7.84315 7.87512 8.00881 8.14891 8.25594 8.46535 8.61021 9.01125 9.59693 10.94168 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.012302 C = 0.009232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.527531 B = 2275.522139 C = 3032.153807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C 0.191 3.809 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.097 0.903 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.854 3.146 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.241 1.241 13 N -0.520 5.520 14 C 0.055 3.945 15 C -0.123 4.123 16 C 0.002 3.998 17 C -0.140 4.140 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.062 4.062 22 C 0.132 3.868 23 H 0.067 0.933 24 C -0.115 4.115 25 C -0.142 4.142 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.052 0.948 30 H 0.117 0.883 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 5.328 -4.677 7.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C 0.086 3.914 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.114 0.886 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.681 3.319 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.164 1.164 13 N -0.242 5.242 14 C -0.073 4.073 15 C -0.160 4.160 16 C 0.002 3.998 17 C -0.159 4.159 18 C -0.145 4.145 19 C -0.165 4.165 20 C -0.158 4.158 21 C -0.064 4.064 22 C 0.023 3.977 23 H 0.085 0.915 24 C -0.153 4.153 25 C -0.199 4.199 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.471 5.251 -4.442 7.308 hybrid contribution 2.263 -0.373 -0.269 2.309 sum -0.208 4.879 -4.711 6.785 Atomic orbital electron populations 1.22169 1.00843 0.98061 1.00322 1.22302 0.89210 0.97321 1.05876 1.19647 0.91460 0.91015 0.89305 0.94485 1.22834 0.93344 1.00707 1.41150 0.88618 1.24871 0.97776 0.95624 0.94793 1.70241 1.33241 1.04437 1.44059 0.87141 0.87035 0.77810 0.79938 1.21358 1.21840 1.16392 1.63232 1.50203 1.04384 1.06408 1.22135 0.95631 0.97309 0.92252 1.21513 0.95138 0.98134 1.01231 1.19250 0.94536 0.93453 0.92597 1.20777 0.94056 0.98356 1.02694 1.20711 0.98302 0.94203 1.01276 1.20703 0.96967 0.97223 1.01599 1.20846 0.94023 0.98861 1.02117 1.19980 0.97318 0.93100 0.95999 1.20363 0.89270 0.92984 0.95111 0.91543 1.21694 0.99219 0.98261 0.96077 1.21786 0.97033 1.03144 0.97983 0.94712 0.93482 0.95810 0.92984 0.86545 0.93615 0.93509 0.90161 0.94054 0.85592 0.87855 0.88011 0.87825 0.87273 0.93495 0.89803 0.90355 0.94656 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.26 37.16 0.34 -2.70 16 2 C -0.11 -2.44 3.33 -26.74 -0.09 -2.53 16 3 C 0.19 4.23 1.67 -68.86 -0.12 4.12 16 4 H 0.04 0.89 5.44 -51.93 -0.28 0.61 16 5 C -0.54 -12.92 3.63 -34.44 -0.12 -13.05 16 6 H 0.10 2.30 2.75 -63.58 -0.17 2.13 16 7 C 0.07 1.77 4.27 -17.82 -0.08 1.69 16 8 N -0.88 -22.79 9.18 55.43 0.51 -22.28 16 9 Si 0.85 20.27 28.76 -169.99 -4.89 15.38 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.24 -5.53 4.67 56.52 0.26 -5.26 16 13 N -0.52 -10.20 3.67 -221.60 -0.81 -11.01 16 14 C 0.06 1.04 5.04 -3.74 -0.02 1.02 16 15 C -0.12 -2.47 4.89 -27.93 -0.14 -2.60 16 16 C 0.00 0.04 3.62 -104.60 -0.38 -0.34 16 17 C -0.14 -2.78 7.81 -39.50 -0.31 -3.09 16 18 C -0.13 -2.36 8.88 -39.65 -0.35 -2.72 16 19 C -0.15 -2.65 10.05 -39.65 -0.40 -3.05 16 20 C -0.14 -2.59 8.74 -39.48 -0.35 -2.94 16 21 C -0.06 -1.23 2.96 -104.63 -0.31 -1.54 16 22 C 0.13 2.48 2.42 -69.05 -0.17 2.31 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 24 C -0.11 -2.05 4.17 -26.73 -0.11 -2.16 16 25 C -0.14 -2.37 9.29 37.16 0.35 -2.03 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.87 5.40 -51.93 -0.28 0.59 16 28 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.05 1.22 4.59 -51.93 -0.24 0.98 16 30 H 0.12 2.95 5.68 -51.94 -0.30 2.65 16 31 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.05 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.08 1.50 4.82 -51.92 -0.25 1.25 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.13 2.91 3.44 -51.93 -0.18 2.73 16 36 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.81 6.71 -52.49 -0.35 1.46 16 40 H 0.05 0.74 7.09 -51.93 -0.37 0.38 16 41 H 0.08 1.73 5.94 -51.93 -0.31 1.42 16 42 H 0.08 1.46 5.23 -51.93 -0.27 1.19 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -24.69 296.99 -9.45 -34.14 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.50 Total: 8.88 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -2.24 Total: -29.59 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: -0.30 Total: -33.29 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.89 Total: 15.38 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.69 -9.45 -34.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.179 kcal (2) G-P(sol) polarization free energy of solvation -24.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds