Wall clock time and date at job start Mon Mar 30 2020 20:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47279 * 2 1 4 4 H 1.09000 * 109.46745 * 184.23754 * 3 2 1 5 5 C 1.50696 * 109.47022 * 304.23933 * 3 2 1 6 6 H 1.08002 * 120.00118 * 120.00052 * 5 3 2 7 7 C 1.37877 * 119.99853 * 299.99865 * 5 3 2 8 8 N 1.31515 * 119.99821 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00181 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46677 * 89.99940 * 9 7 5 11 11 H 1.48495 * 109.46982 * 209.99861 * 9 7 5 12 12 H 1.48494 * 109.47114 * 330.00401 * 9 7 5 13 13 N 1.46906 * 109.46975 * 64.23760 * 3 2 1 14 14 C 1.46897 * 110.99797 * 63.63351 * 13 3 2 15 15 C 1.50708 * 109.46695 * 202.23461 * 14 13 3 16 16 C 1.38230 * 119.99687 * 246.99228 * 15 14 13 17 17 C 1.38238 * 119.99653 * 179.76631 * 16 15 14 18 18 C 1.38235 * 119.99960 * 0.51074 * 17 16 15 19 19 C 1.38233 * 120.00344 * 359.74334 * 18 17 16 20 20 C 1.38235 * 120.00065 * 67.26934 * 15 14 13 21 21 C 1.46904 * 110.99767 * 187.58403 * 13 3 2 22 22 C 1.53785 * 113.61163 * 273.54282 * 21 13 3 23 23 C 1.53783 * 87.07575 * 220.02138 * 22 21 13 24 24 C 1.53773 * 87.08661 * 25.43300 * 23 22 21 25 25 H 1.09003 * 109.46862 * 296.50400 * 1 2 3 26 26 H 1.08997 * 109.46923 * 56.49411 * 1 2 3 27 27 H 1.08994 * 109.47157 * 176.50254 * 1 2 3 28 28 H 1.09005 * 109.46710 * 120.00324 * 2 1 3 29 29 H 1.09001 * 109.46583 * 240.00015 * 2 1 3 30 30 H 0.97000 * 120.00200 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47025 * 322.22573 * 14 13 3 32 32 H 1.08996 * 109.47813 * 82.23364 * 14 13 3 33 33 H 1.07997 * 120.00533 * 0.02562 * 16 15 14 34 34 H 1.08003 * 120.00211 * 180.23544 * 17 16 15 35 35 H 1.08004 * 119.99827 * 179.72697 * 18 17 16 36 36 H 1.07990 * 120.00255 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.00134 * 0.02562 * 20 15 14 38 38 H 1.09001 * 112.84883 * 44.85105 * 21 13 3 39 39 H 1.09001 * 113.61404 * 334.56978 * 22 21 13 40 40 H 1.08996 * 113.61208 * 105.47505 * 22 21 13 41 41 H 1.09005 * 113.61377 * 270.88252 * 23 22 21 42 42 H 1.09001 * 113.61194 * 139.98598 * 23 22 21 43 43 H 1.08994 * 113.61512 * 220.02093 * 24 23 22 44 44 H 1.09001 * 113.69125 * 89.12444 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1275 1.4433 -0.0759 5 6 1.4539 2.1825 -1.1746 6 1 0.8421 3.0574 -1.0109 7 6 1.6985 1.7427 -2.4582 8 7 1.1873 2.3889 -3.4833 9 14 2.7560 0.2291 -2.7414 10 1 1.8947 -0.9805 -2.7568 11 1 3.4589 0.3530 -4.0435 12 1 3.7547 0.1116 -1.6488 13 7 1.6358 2.1048 1.2474 14 6 2.2596 1.4612 2.4112 15 6 1.4508 1.7643 3.6463 16 6 1.9852 2.5562 4.6452 17 6 1.2415 2.8382 5.7759 18 6 -0.0326 2.3194 5.9122 19 6 -0.5650 1.5232 4.9156 20 6 0.1767 1.2456 3.7826 21 6 1.9502 3.5392 1.2076 22 6 3.3822 3.8688 1.6610 23 6 2.7885 5.0904 2.3822 24 6 1.4645 4.3109 2.4460 25 1 -0.3633 0.4586 0.9197 26 1 -0.3633 0.5673 -0.8569 27 1 -0.3633 -1.0257 -0.0627 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.3597 2.0797 -4.3864 31 1 2.2941 0.3830 2.2551 32 1 3.2728 1.8427 2.5378 33 1 2.9821 2.9582 4.5406 34 1 1.6575 3.4600 6.5548 35 1 -0.6119 2.5361 6.7976 36 1 -1.5602 1.1176 5.0223 37 1 -0.2389 0.6228 3.0043 38 1 1.6708 4.0078 0.2639 39 1 3.8078 3.1270 2.3368 40 1 4.0511 4.1286 0.8405 41 1 2.7396 5.9838 1.7596 42 1 3.2321 5.2784 3.3600 43 1 0.5854 4.9275 2.2592 44 1 1.3645 3.6896 3.3360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:53 Heat of formation + Delta-G solvation = 63.384192 kcal Electronic energy + Delta-G solvation = -22448.314156 eV Core-core repulsion = 19559.733505 eV Total energy + Delta-G solvation = -2888.580651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51278 -39.27277 -37.42152 -34.58561 -33.31863 -31.92069 -31.62071 -28.81123 -27.04228 -26.15118 -25.46401 -24.00035 -23.33336 -22.13935 -20.92969 -19.95894 -18.29182 -17.88929 -17.38012 -16.58014 -16.37391 -15.87965 -15.55751 -15.39416 -15.10223 -14.83087 -14.51030 -14.12178 -14.01226 -13.92370 -13.60556 -13.08387 -13.06328 -12.92552 -12.59776 -12.44003 -12.24801 -12.13657 -11.90244 -11.82505 -11.58843 -11.48934 -11.27675 -11.17261 -10.87249 -10.85593 -10.63238 -9.62060 -9.23450 -8.78916 -8.24563 -6.23968 0.56644 0.64838 1.29075 1.32936 1.41701 2.32606 2.93569 3.10551 3.37333 3.83804 3.92410 3.99890 4.05792 4.16240 4.25701 4.28953 4.30404 4.37610 4.43969 4.53808 4.58256 4.68162 4.77468 4.83028 4.92254 4.97459 5.03875 5.07835 5.12091 5.16317 5.22469 5.26784 5.28360 5.32780 5.36609 5.45052 5.60299 5.69303 5.73167 5.75759 5.82221 5.89540 6.12372 6.25214 6.48249 6.78852 6.82605 7.38918 8.91657 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.006541 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.397610 B = 4279.580871 C = 4914.718844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.122 4.122 3 C 0.191 3.809 4 H -0.015 1.015 5 C -0.484 4.484 6 H 0.042 0.958 7 C 0.018 3.982 8 N -0.949 5.949 9 Si 0.936 3.064 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.254 1.254 13 N -0.506 5.506 14 C 0.067 3.933 15 C -0.069 4.069 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.115 4.115 21 C 0.066 3.934 22 C -0.179 4.179 23 C -0.122 4.122 24 C -0.162 4.162 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.129 0.871 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 -1.359 19.592 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.083 3.917 4 H 0.002 0.998 5 C -0.522 4.522 6 H 0.060 0.940 7 C -0.179 4.179 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.178 1.178 13 N -0.228 5.228 14 C -0.060 4.060 15 C -0.070 4.070 16 C -0.139 4.139 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.133 4.133 21 C -0.043 4.043 22 C -0.218 4.218 23 C -0.159 4.159 24 C -0.198 4.198 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.459 -1.424 19.425 19.532 hybrid contribution 1.079 -0.347 -1.501 1.881 sum 2.539 -1.770 17.924 18.189 Atomic orbital electron populations 1.21413 0.94910 0.99328 1.01913 1.21875 0.98018 0.96927 0.99099 1.19479 0.92249 0.91830 0.88139 0.99757 1.21059 1.29777 1.11620 0.89762 0.94000 1.25595 0.96899 0.99485 0.95891 1.70024 1.47425 1.42456 0.99085 0.86045 0.79927 0.80910 0.76677 1.19295 1.23092 1.17802 1.61833 1.57767 1.01905 1.01312 1.21443 0.95884 0.99736 0.88947 1.19777 0.95347 0.97073 0.94779 1.21083 1.00700 0.98261 0.93867 1.21362 0.94859 1.00335 0.97826 1.21409 0.96101 0.97651 0.99512 1.21370 1.00328 0.99063 0.93897 1.21110 0.94247 1.00314 0.97662 1.23111 0.94495 0.88597 0.98092 1.23652 0.98095 0.99480 1.00605 1.22559 0.96517 0.96059 1.00795 1.23975 0.96680 0.98828 1.00363 0.91989 0.94712 0.93493 0.91446 0.94909 0.92837 0.90103 0.92372 0.85338 0.83841 0.84026 0.84933 0.86929 0.91003 0.88303 0.93474 0.91047 0.89468 0.93839 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.52 71.98 0.69 -4.11 16 2 C -0.12 -5.04 5.04 30.60 0.15 -4.88 16 3 C 0.19 8.71 1.35 44.17 0.06 8.77 16 4 H -0.02 -0.72 7.20 -2.39 -0.02 -0.74 16 5 C -0.48 -26.90 6.82 25.60 0.17 -26.72 16 6 H 0.04 2.63 6.55 -2.91 -0.02 2.61 16 7 C 0.02 1.05 5.45 84.65 0.46 1.51 16 8 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 9 Si 0.94 45.24 24.33 68.60 1.67 46.91 16 10 H -0.27 -12.35 6.91 99.48 0.69 -11.66 16 11 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 12 H -0.25 -11.48 6.53 99.48 0.65 -10.83 16 13 N -0.51 -19.80 3.89 -851.68 -3.32 -23.11 16 14 C 0.07 2.11 4.76 85.56 0.41 2.51 16 15 C -0.07 -1.90 3.65 -19.86 -0.07 -1.98 16 16 C -0.12 -2.75 6.96 22.27 0.15 -2.60 16 17 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 18 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 19 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 20 C -0.11 -3.16 9.70 22.27 0.22 -2.94 16 21 C 0.07 2.57 3.52 45.44 0.16 2.73 16 22 C -0.18 -5.80 7.37 31.12 0.23 -5.57 16 23 C -0.12 -3.35 8.08 31.12 0.25 -3.09 16 24 C -0.16 -5.15 7.33 31.12 0.23 -4.92 16 25 H 0.06 2.37 6.68 -2.39 -0.02 2.36 16 26 H 0.03 1.65 6.96 -2.39 -0.02 1.63 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.38 5.98 -2.38 -0.01 2.36 16 29 H 0.03 1.43 3.39 -2.39 -0.01 1.42 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.08 2.52 5.65 -2.39 -0.01 2.51 16 32 H 0.06 1.73 4.60 -2.39 -0.01 1.72 16 33 H 0.13 2.60 7.81 -2.91 -0.02 2.58 16 34 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.13 2.48 8.06 -2.92 -0.02 2.46 16 37 H 0.11 3.31 6.91 -2.91 -0.02 3.29 16 38 H 0.07 3.45 5.91 -2.39 -0.01 3.44 16 39 H 0.10 2.86 5.00 -2.39 -0.01 2.85 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.13 3.68 2.26 -2.39 -0.01 3.67 16 Total: -1.00 -64.13 320.49 3.35 -60.78 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.92 Total: 22.80 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 3.78 Total: -48.45 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.02 Total: -82.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Total: -64.13 3.35 -60.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.167 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds