Wall clock time and date at job start Mon Mar 30 2020 20:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47137 * 239.99563 * 2 1 3 5 5 C 1.50700 * 109.46936 * 64.99808 * 4 2 1 6 6 H 1.07999 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99788 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00231 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99867 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47371 * 60.00109 * 9 7 5 11 11 H 1.48504 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46736 * 299.99870 * 9 7 5 13 13 C 1.53000 * 109.46696 * 119.99874 * 2 1 3 14 14 N 1.46899 * 109.46949 * 295.68024 * 13 2 1 15 15 C 1.47896 * 111.00101 * 294.33735 * 14 13 2 16 16 C 1.53999 * 107.06039 * 214.15532 * 15 14 13 17 17 C 1.54604 * 105.13614 * 1.22751 * 16 15 14 18 18 H 1.08993 * 110.72567 * 263.41901 * 17 16 15 19 19 C 1.50704 * 110.71813 * 140.31416 * 17 16 15 20 20 C 1.38237 * 120.00301 * 301.17407 * 19 17 16 21 21 C 1.38234 * 119.99923 * 179.74382 * 20 19 17 22 22 C 1.38236 * 120.00088 * 0.56361 * 21 20 19 23 23 C 1.38235 * 119.99612 * 359.69359 * 22 21 20 24 24 C 1.38230 * 119.99678 * 121.45688 * 19 17 16 25 25 C 1.48539 * 110.99815 * 176.94157 * 14 13 2 26 26 H 1.08997 * 109.47306 * 304.83729 * 1 2 3 27 27 H 1.09003 * 109.46928 * 64.83779 * 1 2 3 28 28 H 1.08995 * 109.47356 * 184.83525 * 1 2 3 29 29 H 1.08995 * 109.47343 * 185.00122 * 4 2 1 30 30 H 1.09007 * 109.47072 * 305.00640 * 4 2 1 31 31 H 0.96997 * 120.00078 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46787 * 175.68388 * 13 2 1 33 33 H 1.08992 * 109.47713 * 55.68670 * 13 2 1 34 34 H 1.08997 * 109.91693 * 94.80950 * 15 14 13 35 35 H 1.09002 * 109.92311 * 333.50991 * 15 14 13 36 36 H 1.09004 * 110.30593 * 120.14166 * 16 15 14 37 37 H 1.08999 * 110.31135 * 242.21471 * 16 15 14 38 38 H 1.07999 * 119.99413 * 0.02562 * 20 19 17 39 39 H 1.08000 * 120.00061 * 180.27412 * 21 20 19 40 40 H 1.07999 * 120.00065 * 179.72189 * 22 21 20 41 41 H 1.08001 * 119.99793 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00153 * 359.97438 * 24 19 17 43 43 H 1.08999 * 110.66790 * 41.28909 * 25 14 13 44 44 H 1.08996 * 110.66832 * 278.16129 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9744 -2.3757 7 6 1.9932 -0.4020 -3.7282 8 7 2.6764 -1.5190 -3.8510 9 14 1.4996 0.5630 -5.2496 10 1 2.0917 1.9234 -5.1867 11 1 1.9945 -0.1372 -6.4621 12 1 0.0196 0.6695 -5.3095 13 6 2.0399 -0.7212 1.2493 14 7 1.6372 0.0289 2.4464 15 6 2.3046 1.3479 2.4948 16 6 2.5683 1.6666 3.9782 17 6 2.0401 0.4387 4.7550 18 1 1.0281 0.6180 5.1180 19 6 2.9609 0.0938 5.8970 20 6 4.2860 -0.2117 5.6484 21 6 5.1319 -0.5229 6.6965 22 6 4.6500 -0.5401 7.9920 23 6 3.3236 -0.2398 8.2400 24 6 2.4791 0.0771 7.1925 25 6 2.0521 -0.6805 3.6837 26 1 -0.3634 0.5870 0.8434 27 1 -0.3633 0.4370 -0.9302 28 1 -0.3634 -1.0239 0.0866 29 1 3.1263 -0.7996 -1.2055 30 1 1.6053 -1.7199 -1.2951 31 1 2.9243 -1.8416 -4.7316 32 1 3.1272 -0.7887 1.2115 33 1 1.6149 -1.7241 1.2889 34 1 1.6554 2.1086 2.0614 35 1 3.2480 1.3070 1.9504 36 1 3.6365 1.7944 4.1535 37 1 2.0268 2.5650 4.2742 38 1 4.6614 -0.2027 4.6358 39 1 6.1683 -0.7572 6.5028 40 1 5.3098 -0.7876 8.8104 41 1 2.9472 -0.2528 9.2522 42 1 1.4428 0.3116 7.3863 43 1 3.0539 -1.0952 3.5718 44 1 1.3368 -1.4630 3.9367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:22 Heat of formation + Delta-G solvation = 6.325094 kcal Electronic energy + Delta-G solvation = -20563.287566 eV Core-core repulsion = 17672.232647 eV Total energy + Delta-G solvation = -2891.054919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01957 -38.33471 -35.39080 -32.94957 -31.73839 -31.07837 -29.86421 -28.12470 -26.73516 -25.31779 -23.21172 -22.82587 -22.34636 -20.79622 -20.17724 -18.55290 -17.16724 -16.32889 -16.06321 -15.51020 -14.90403 -14.84164 -14.38433 -13.96546 -13.78977 -13.47103 -13.19062 -13.05274 -12.79745 -12.67691 -12.17973 -11.94411 -11.54536 -11.39877 -11.35779 -11.35201 -11.00454 -10.88143 -10.80920 -10.68508 -10.51030 -10.25044 -10.19042 -9.61593 -9.11756 -9.09734 -8.95804 -8.79342 -8.30550 -8.08501 -5.95551 -3.96581 1.17271 1.22225 3.35719 3.39947 3.42551 3.58779 4.16638 4.49676 4.59512 4.68267 4.81640 4.82983 4.88492 4.96781 5.16722 5.30526 5.34163 5.39453 5.40088 5.58420 5.68226 5.77232 5.80961 5.84076 5.87214 5.89625 6.09012 6.10662 6.18867 6.21726 6.30133 6.33417 6.44249 6.52187 6.56466 6.72754 6.82730 7.05215 7.10610 7.22745 7.30031 7.45397 7.71873 7.88146 8.04854 8.49055 9.09599 9.66556 11.16016 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.040840 B = 0.003034 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.445566 B = 9225.708415 C = 9467.638498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.052 3.948 14 N -0.513 5.513 15 C 0.037 3.963 16 C -0.122 4.122 17 C -0.054 4.054 18 H 0.089 0.911 19 C -0.067 4.067 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.117 4.117 25 C 0.043 3.957 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.011 0.989 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.045 0.955 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 3.238 23.150 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.075 4.075 14 N -0.236 5.236 15 C -0.091 4.091 16 C -0.160 4.160 17 C -0.073 4.073 18 H 0.108 0.892 19 C -0.068 4.068 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.085 4.085 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.063 0.937 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.380 3.169 22.962 23.221 hybrid contribution 0.771 0.279 -0.929 1.239 sum 2.151 3.449 22.033 22.405 Atomic orbital electron populations 1.21581 0.95742 1.00311 1.00322 1.21193 0.95980 0.98992 0.93719 0.92714 1.19118 0.95832 0.95586 0.90482 1.21200 1.34601 1.08259 0.90993 0.92628 1.25019 0.95355 0.95097 0.99068 1.69955 1.39076 1.21245 1.23457 0.86696 0.78918 0.80097 0.82511 1.20327 1.21384 1.20257 1.22495 0.97421 0.97623 0.89970 1.64811 1.54519 1.02582 1.01726 1.22852 0.97968 0.93054 0.95259 1.22541 1.01053 0.97595 0.94812 1.21082 0.98150 0.95529 0.92541 0.89230 1.19846 0.94231 0.98426 0.94266 1.21056 0.93360 0.99599 0.99245 1.21151 0.99698 0.99940 0.92849 1.21128 0.95810 1.00885 0.96817 1.21128 0.93927 0.99860 0.98916 1.21083 0.99791 1.00465 0.92165 1.23295 0.99478 0.96101 0.89658 0.94101 0.92611 0.94274 0.97029 0.96599 0.93060 0.95250 0.91257 0.90260 0.93525 0.91449 0.91056 0.86108 0.86170 0.86337 0.86238 0.86075 0.93679 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.90 37.16 0.33 -2.10 16 2 C -0.08 -1.66 2.29 -90.62 -0.21 -1.87 16 3 H 0.05 1.16 7.22 -51.93 -0.37 0.78 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.48 8.34 -34.44 -0.29 -14.77 16 6 H 0.06 1.53 7.08 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.05 0.93 4.13 -3.82 -0.02 0.92 16 14 N -0.51 -7.76 4.81 -230.46 -1.11 -8.87 16 15 C 0.04 0.51 5.53 -2.75 -0.02 0.49 16 16 C -0.12 -1.37 6.42 -25.37 -0.16 -1.53 16 17 C -0.05 -0.59 3.28 -89.91 -0.30 -0.89 16 18 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 19 C -0.07 -0.71 4.93 -104.62 -0.52 -1.22 16 20 C -0.11 -1.20 8.15 -39.58 -0.32 -1.53 16 21 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 22 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.11 9.68 -39.58 -0.38 -1.50 16 25 C 0.04 0.55 5.94 -1.90 -0.01 0.54 16 26 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 27 H 0.05 1.19 6.83 -51.93 -0.35 0.83 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.03 0.53 7.94 -51.93 -0.41 0.12 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 35 H 0.05 0.69 7.64 -51.93 -0.40 0.29 16 36 H 0.07 0.73 7.07 -51.93 -0.37 0.36 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.26 7.27 -52.49 -0.38 0.88 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.96 7.98 -52.49 -0.42 0.55 16 43 H 0.04 0.59 6.68 -51.93 -0.35 0.24 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -30.18 347.56 -11.06 -41.24 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.61 Total: -2.13 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -3.30 Total: -25.84 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.37 Total: -35.35 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.18 -11.06 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.566 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds