Wall clock time and date at job start Mon Mar 30 2020 20:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47007 * 270.00498 * 3 2 1 5 5 H 1.48498 * 109.47059 * 30.00231 * 3 2 1 6 6 H 1.48502 * 109.47326 * 150.00194 * 3 2 1 7 7 C 1.38762 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99824 * 359.97438 * 7 2 1 9 9 O 1.34926 * 119.99598 * 179.97438 * 7 2 1 10 10 C 1.34315 * 116.99402 * 179.97438 * 9 7 2 11 11 O 1.21206 * 120.00112 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99514 * 180.02562 * 10 9 7 13 13 C 1.50697 * 109.46664 * 180.02562 * 12 10 9 14 14 N 1.29974 * 120.00008 * 0.02562 * 13 12 10 15 15 N 1.39508 * 122.69779 * 179.72159 * 14 13 12 16 16 H 0.96996 * 119.12217 * 179.97438 * 15 14 13 17 17 C 1.34937 * 121.75018 * 0.02562 * 15 14 13 18 18 O 1.21808 * 120.63127 * 180.02562 * 17 15 14 19 19 C 1.46812 * 118.74114 * 359.97438 * 17 15 14 20 20 C 1.39425 * 122.01197 * 180.02562 * 19 17 15 21 21 C 1.37772 * 119.38757 * 179.97438 * 20 19 17 22 22 C 1.38893 * 120.69818 * 0.09684 * 21 20 19 23 23 C 1.36686 * 120.91546 * 359.91856 * 22 21 20 24 24 C 1.39616 * 119.67330 * 0.02562 * 23 22 21 25 25 H 0.96993 * 120.00247 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47045 * 60.00388 * 12 10 9 27 27 H 1.08994 * 109.47392 * 300.00350 * 12 10 9 28 28 H 1.07997 * 120.30696 * 359.95458 * 20 19 17 29 29 H 1.08004 * 119.64574 * 180.02562 * 21 20 19 30 30 H 1.07996 * 119.54337 * 179.97438 * 22 21 20 31 31 H 1.07996 * 120.16637 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4460 2.6526 0.7001 6 1 3.5461 1.4401 0.7000 7 6 2.0082 -1.2017 -0.0005 8 1 1.4682 -2.1369 -0.0005 9 8 3.3574 -1.2017 -0.0011 10 6 3.9671 -2.3985 -0.0010 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4773 -0.0010 13 6 5.8993 -3.9224 -0.0016 14 7 5.0041 -4.8647 -0.0025 15 7 5.3361 -6.2197 -0.0088 16 1 4.6255 -6.8799 -0.0089 17 6 6.6196 -6.6362 -0.0139 18 8 6.8864 -7.8247 -0.0198 19 6 7.6884 -5.6297 -0.0132 20 6 9.0370 -5.9837 -0.0188 21 6 9.9957 -4.9943 -0.0184 22 6 9.6314 -3.6540 -0.0105 23 6 8.3156 -3.2839 -0.0047 24 6 7.3218 -4.2645 -0.0061 25 1 -0.4850 0.8400 0.0004 26 1 5.8618 -1.9832 0.8890 27 1 5.8618 -1.9832 -0.8909 28 1 9.3274 -7.0239 -0.0230 29 1 11.0416 -5.2638 -0.0231 30 1 10.3984 -2.8937 -0.0100 31 1 8.0460 -2.2382 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004493179.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:28 Heat of formation + Delta-G solvation = -30.436683 kcal Electronic energy + Delta-G solvation = -19987.346424 eV Core-core repulsion = 16621.772200 eV Total energy + Delta-G solvation = -3365.574224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01935 -39.22580 -38.44399 -37.19421 -35.33313 -33.32973 -32.28439 -31.55293 -30.72855 -28.96621 -25.44192 -24.59054 -23.92391 -21.70484 -20.11347 -19.19790 -18.40913 -17.91501 -17.34911 -16.44460 -15.79638 -15.71168 -15.20930 -15.09249 -14.86483 -14.70069 -14.10551 -13.71369 -13.44271 -13.15488 -12.83862 -12.43068 -12.31120 -11.93633 -11.92200 -11.75769 -11.15452 -11.04206 -10.46739 -10.35717 -9.89577 -9.80761 -9.69340 -9.43264 -8.79595 -8.67019 -8.49275 -6.35102 -4.10883 0.34087 0.65502 1.96383 2.47578 2.63081 3.14342 3.23229 3.33830 3.41101 3.66199 3.71047 3.84071 4.24448 4.37093 4.39208 4.55442 4.86492 4.97328 5.10146 5.10850 5.28219 5.37999 5.52164 5.59941 5.69730 5.90056 6.05018 6.12041 6.36766 6.41595 6.53601 7.67346 7.75461 8.02803 8.06345 8.66103 9.03230 9.69370 10.73649 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.004550 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.712911 B = 6152.596527 C = 7107.152592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.379 4.379 8 H 0.110 0.890 9 O -0.255 6.255 10 C 0.402 3.598 11 O -0.498 6.498 12 C -0.044 4.044 13 C 0.116 3.884 14 N -0.150 5.150 15 N -0.536 5.536 16 H 0.437 0.563 17 C 0.524 3.476 18 O -0.536 6.536 19 C -0.129 4.129 20 C -0.055 4.055 21 C -0.120 4.120 22 C -0.089 4.089 23 C -0.101 4.101 24 C -0.044 4.044 25 H 0.279 0.721 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.665 -3.986 0.006 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.455 4.455 8 H 0.127 0.873 9 O -0.165 6.165 10 C 0.245 3.755 11 O -0.389 6.389 12 C -0.084 4.084 13 C -0.070 4.070 14 N 0.039 4.961 15 N -0.280 5.280 16 H 0.281 0.719 17 C 0.314 3.686 18 O -0.413 6.413 19 C -0.135 4.135 20 C -0.074 4.074 21 C -0.140 4.140 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.048 4.048 25 H 0.089 0.911 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 19.545 -4.982 0.008 20.170 hybrid contribution 0.687 0.467 -0.015 0.831 sum 20.233 -4.515 -0.007 20.730 Atomic orbital electron populations 1.69605 1.05724 1.28315 1.48004 1.24539 0.94982 0.98622 0.95748 0.86224 0.80267 0.81622 0.78819 1.19944 1.20898 1.18390 1.20622 0.76062 0.96936 1.51840 0.87291 1.83492 1.24005 1.31132 1.77866 1.22471 0.89803 0.83189 0.80049 1.90718 1.65894 1.35285 1.46974 1.19934 0.92891 0.89235 1.06328 1.22989 0.88203 0.95459 1.00372 1.75793 1.24669 0.86880 1.08756 1.47519 1.07563 1.05376 1.67561 0.71912 1.18767 0.83890 0.88807 0.77146 1.90891 1.82792 1.16677 1.50896 1.20013 0.94804 0.92170 1.06555 1.21107 0.90431 1.00724 0.95119 1.21302 0.99830 0.92663 1.00165 1.21116 0.96374 0.96470 0.96754 1.21055 0.92119 0.99602 0.99306 1.19555 0.93217 0.92963 0.99045 0.91103 0.86029 0.86033 0.84158 0.84890 0.84829 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.48 0.77 -24.90 16 2 C 0.06 1.80 5.49 -17.53 -0.10 1.71 16 3 Si 0.91 20.63 28.62 -169.99 -4.86 15.77 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.38 -10.92 10.10 30.93 0.31 -10.61 16 8 H 0.11 3.50 7.09 -52.49 -0.37 3.12 16 9 O -0.26 -6.32 8.58 -20.73 -0.18 -6.50 16 10 C 0.40 8.68 7.90 36.01 0.28 8.97 16 11 O -0.50 -12.43 13.16 -19.05 -0.25 -12.68 16 12 C -0.04 -0.63 5.03 -29.04 -0.15 -0.77 16 13 C 0.12 1.74 6.99 -80.14 -0.56 1.18 16 14 N -0.15 -2.68 8.58 34.88 0.30 -2.38 16 15 N -0.54 -8.55 6.59 30.34 0.20 -8.35 16 16 H 0.44 6.26 8.92 -183.05 -1.63 4.63 16 17 C 0.52 8.25 8.01 -12.72 -0.10 8.14 16 18 O -0.54 -9.39 17.42 5.09 0.09 -9.31 16 19 C -0.13 -1.73 5.90 -104.80 -0.62 -2.35 16 20 C -0.05 -0.58 9.67 -39.31 -0.38 -0.96 16 21 C -0.12 -0.94 10.01 -39.51 -0.40 -1.33 16 22 C -0.09 -0.64 9.96 -39.90 -0.40 -1.04 16 23 C -0.10 -0.89 9.46 -39.63 -0.38 -1.26 16 24 C -0.04 -0.54 5.89 -104.95 -0.62 -1.16 16 25 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.14 1.40 7.81 -52.49 -0.41 0.99 16 29 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 30 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.14 0.89 7.27 -52.49 -0.38 0.51 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -35.48 284.40 -6.36 -41.84 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -3.62 Total: 1.73 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.09 Total: 0.50 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 1.27 Total: -35.63 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.34 Total: -28.49 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.86 Total: 15.77 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -35.48 -6.36 -41.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004493179.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.399 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds