Wall clock time and date at job start Mon Mar 30 2020 20:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46717 * 2 1 4 4 C 1.52999 * 109.47081 * 120.00006 * 2 1 3 5 5 C 1.50700 * 109.47061 * 295.00204 * 4 2 1 6 6 H 1.08001 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99558 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00317 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99683 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47166 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47144 * 119.99969 * 9 7 5 12 12 H 1.48493 * 109.47333 * 239.99974 * 9 7 5 13 13 C 1.52997 * 109.47257 * 240.00392 * 2 1 3 14 14 N 1.46902 * 109.47376 * 64.99377 * 13 2 1 15 15 C 1.46896 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50703 * 109.47080 * 180.02562 * 15 14 13 17 17 C 1.38254 * 120.03196 * 269.97791 * 16 15 14 18 18 C 1.38106 * 119.93398 * 180.02562 * 17 16 15 19 19 C 1.38492 * 120.21577 * 0.02562 * 18 17 16 20 20 C 1.38218 * 119.84717 * 359.68274 * 19 18 17 21 21 C 1.38103 * 120.03189 * 90.00299 * 16 15 14 22 22 C 1.51376 * 109.75712 * 179.81348 * 20 19 18 23 23 C 1.54340 * 105.23903 * 343.22389 * 22 20 19 24 24 C 1.51374 * 130.39369 * 179.97438 * 19 18 17 25 25 H 1.08998 * 109.47331 * 60.00204 * 1 2 3 26 26 H 1.09004 * 109.47122 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47320 * 299.99712 * 1 2 3 28 28 H 1.08998 * 109.47354 * 55.00194 * 4 2 1 29 29 H 1.09003 * 109.46775 * 175.00550 * 4 2 1 30 30 H 0.96994 * 120.00088 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47132 * 304.99835 * 13 2 1 32 32 H 1.08994 * 109.46989 * 185.00131 * 13 2 1 33 33 H 1.00902 * 110.99301 * 56.04530 * 14 13 2 34 34 H 1.09006 * 109.46997 * 60.00461 * 15 14 13 35 35 H 1.08997 * 109.47535 * 300.00548 * 15 14 13 36 36 H 1.08004 * 120.03135 * 0.04796 * 17 16 15 37 37 H 1.08000 * 119.89016 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.88983 * 359.97438 * 21 16 15 39 39 H 1.09007 * 110.46765 * 224.17833 * 22 20 19 40 40 H 1.09003 * 110.15867 * 102.11293 * 22 20 19 41 41 H 1.08998 * 110.82511 * 267.88699 * 23 22 20 42 42 H 1.09004 * 110.99632 * 144.41494 * 23 22 20 43 43 H 1.08998 * 110.29975 * 316.10832 * 24 19 18 44 44 H 1.08998 * 110.29584 * 78.25938 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9933 -0.4018 3.7283 8 7 2.6773 -1.5182 3.8511 9 14 1.4984 0.5625 5.2497 10 1 0.7399 1.7730 4.8436 11 1 0.6451 -0.2873 6.1186 12 1 2.7161 0.9682 5.9964 13 6 2.0401 -0.7211 -1.2493 14 7 1.6514 0.0375 -2.4457 15 6 2.1258 -0.6264 -3.6671 16 6 1.7097 0.1794 -4.8708 17 6 0.4962 -0.0699 -5.4845 18 6 0.1171 0.6694 -6.5878 19 6 0.9491 1.6600 -7.0823 20 6 2.1596 1.9133 -6.4650 21 6 2.5404 1.1672 -5.3621 22 6 2.8805 3.0290 -7.1908 23 6 2.1813 3.1390 -8.5624 24 6 0.7691 2.5952 -8.2589 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6055 -1.7198 1.2952 29 1 3.1264 -0.7994 1.2056 30 1 2.9245 -1.8412 4.7316 31 1 1.6055 -1.7197 -1.2952 32 1 3.1263 -0.7994 -1.2056 33 1 1.9881 0.9874 -2.3966 34 1 1.6921 -1.6245 -3.7301 35 1 3.2127 -0.7036 -3.6401 36 1 -0.1548 -0.8418 -5.1014 37 1 -0.8308 0.4738 -7.0669 38 1 3.4882 1.3613 -4.8821 39 1 3.9337 2.7803 -7.3220 40 1 2.7792 3.9633 -6.6386 41 1 2.6841 2.5188 -9.3044 42 1 2.1340 4.1761 -8.8946 43 1 0.3806 2.0502 -9.1191 44 1 0.0982 3.4122 -7.9932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331053367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:09 Heat of formation + Delta-G solvation = -6.698580 kcal Electronic energy + Delta-G solvation = -19957.594812 eV Core-core repulsion = 17065.975145 eV Total energy + Delta-G solvation = -2891.619668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25411 -37.26785 -35.86018 -33.76240 -32.09437 -31.32012 -29.45915 -27.72580 -26.78946 -25.63738 -24.00215 -22.59023 -22.03408 -21.01118 -20.27929 -18.98853 -16.43166 -16.26050 -15.99823 -15.32114 -15.06827 -14.91193 -14.65449 -14.16739 -13.88810 -13.35035 -13.12487 -12.97256 -12.74868 -12.62853 -12.17642 -12.10230 -11.78662 -11.49126 -11.45358 -11.34071 -11.12178 -11.04740 -10.87798 -10.81976 -10.70937 -10.26634 -10.19580 -9.67549 -9.15534 -8.93946 -8.83505 -8.49017 -8.31457 -8.07247 -5.96034 -3.96882 1.25422 1.33733 3.33259 3.40790 3.45128 3.61894 4.17854 4.34737 4.48203 4.63755 4.70852 4.86115 4.88549 4.96067 5.07515 5.35958 5.39866 5.41848 5.44540 5.48362 5.52720 5.57123 5.66087 5.69043 5.78058 5.87120 5.91780 6.00409 6.11299 6.18668 6.34515 6.43808 6.53818 6.57887 6.61393 6.72364 6.94102 7.04139 7.21463 7.22461 7.37901 7.66198 7.72428 7.87785 8.04544 8.48806 9.09790 9.66439 11.15597 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.002673 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.659983 B =10473.486281 C =10614.814333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.097 3.903 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.109 4.109 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.102 4.102 22 C -0.082 4.082 23 C -0.120 4.120 24 C -0.082 4.082 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.338 0.662 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 6.347 -25.206 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.312 5.312 15 C -0.032 4.032 16 C -0.074 4.074 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.158 4.158 24 C -0.119 4.119 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.032 5.937 -25.098 25.871 hybrid contribution 0.745 0.552 1.092 1.432 sum -1.287 6.489 -24.007 24.901 Atomic orbital electron populations 1.21586 0.95715 1.00542 1.00149 1.21195 0.96026 0.98894 0.93972 0.92873 1.19132 0.95903 0.95598 0.90460 1.21282 1.34420 1.08254 0.90974 0.92514 1.25028 0.95368 0.95118 0.99115 1.69972 1.39192 1.21315 1.23244 0.86575 0.78235 0.80146 0.83292 1.19745 1.21088 1.21129 1.22183 0.97200 0.97763 0.89387 1.60597 1.63915 1.05766 1.00941 1.20872 0.97368 0.97245 0.87740 1.19737 0.94600 0.96736 0.96367 1.20936 0.95838 0.99747 0.95031 1.20600 0.99262 0.95901 0.96986 1.20546 0.95224 0.96904 0.97723 1.20499 0.96098 0.97324 0.96092 1.20516 0.99833 0.95647 0.96066 1.21032 0.99248 0.96700 0.94935 1.22284 0.95291 1.01372 0.96842 1.21032 0.97747 0.97406 0.95666 0.93936 0.94181 0.92801 0.96537 0.96935 0.93173 0.91479 0.95736 0.84459 0.90323 0.94732 0.85688 0.86437 0.86554 0.90866 0.90313 0.91086 0.90655 0.90947 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.10 5.07 -3.82 -0.02 1.09 16 14 N -0.68 -10.22 5.95 -115.06 -0.68 -10.91 16 15 C 0.10 1.24 5.81 -4.98 -0.03 1.21 16 16 C -0.07 -0.91 5.39 -104.66 -0.56 -1.47 16 17 C -0.10 -1.14 9.70 -39.62 -0.38 -1.52 16 18 C -0.11 -1.18 10.04 -39.54 -0.40 -1.57 16 19 C -0.10 -1.09 6.14 -104.20 -0.64 -1.73 16 20 C -0.10 -1.08 6.14 -104.20 -0.64 -1.72 16 21 C -0.10 -1.19 9.70 -39.54 -0.38 -1.57 16 22 C -0.08 -0.68 6.77 -26.85 -0.18 -0.86 16 23 C -0.12 -0.82 7.08 -25.32 -0.18 -1.00 16 24 C -0.08 -0.64 6.77 -26.85 -0.18 -0.82 16 25 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.34 4.96 8.72 -39.29 -0.34 4.62 16 34 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 35 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -30.47 355.22 -11.41 -41.88 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.79 Total: 0.00 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -4.00 Total: -26.73 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.05 Total: -37.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.47 -11.41 -41.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331053367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.186 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds