Wall clock time and date at job start Mon Mar 30 2020 20:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46717 * 2 1 4 4 C 1.52999 * 109.47081 * 120.00006 * 2 1 3 5 5 C 1.50700 * 109.47061 * 295.00204 * 4 2 1 6 6 H 1.08001 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99558 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00317 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99683 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47166 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47144 * 119.99969 * 9 7 5 12 12 H 1.48493 * 109.47333 * 239.99974 * 9 7 5 13 13 C 1.52997 * 109.47257 * 240.00392 * 2 1 3 14 14 N 1.46902 * 109.47376 * 64.99377 * 13 2 1 15 15 C 1.46896 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50703 * 109.47080 * 180.02562 * 15 14 13 17 17 C 1.38254 * 120.03196 * 269.97791 * 16 15 14 18 18 C 1.38106 * 119.93398 * 180.02562 * 17 16 15 19 19 C 1.38492 * 120.21577 * 0.02562 * 18 17 16 20 20 C 1.38218 * 119.84717 * 359.68274 * 19 18 17 21 21 C 1.38103 * 120.03189 * 90.00299 * 16 15 14 22 22 C 1.51376 * 109.75712 * 179.81348 * 20 19 18 23 23 C 1.54340 * 105.23903 * 343.22389 * 22 20 19 24 24 C 1.51374 * 130.39369 * 179.97438 * 19 18 17 25 25 H 1.08998 * 109.47331 * 60.00204 * 1 2 3 26 26 H 1.09004 * 109.47122 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47320 * 299.99712 * 1 2 3 28 28 H 1.08998 * 109.47354 * 55.00194 * 4 2 1 29 29 H 1.09003 * 109.46775 * 175.00550 * 4 2 1 30 30 H 0.96994 * 120.00088 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47132 * 304.99835 * 13 2 1 32 32 H 1.08994 * 109.46989 * 185.00131 * 13 2 1 33 33 H 1.00902 * 110.99301 * 56.04530 * 14 13 2 34 34 H 1.09006 * 109.46997 * 60.00461 * 15 14 13 35 35 H 1.08997 * 109.47535 * 300.00548 * 15 14 13 36 36 H 1.08004 * 120.03135 * 0.04796 * 17 16 15 37 37 H 1.08000 * 119.89016 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.88983 * 359.97438 * 21 16 15 39 39 H 1.09007 * 110.46765 * 224.17833 * 22 20 19 40 40 H 1.09003 * 110.15867 * 102.11293 * 22 20 19 41 41 H 1.08998 * 110.82511 * 267.88699 * 23 22 20 42 42 H 1.09004 * 110.99632 * 144.41494 * 23 22 20 43 43 H 1.08998 * 110.29975 * 316.10832 * 24 19 18 44 44 H 1.08998 * 110.29584 * 78.25938 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9933 -0.4018 3.7283 8 7 2.6773 -1.5182 3.8511 9 14 1.4984 0.5625 5.2497 10 1 0.7399 1.7730 4.8436 11 1 0.6451 -0.2873 6.1186 12 1 2.7161 0.9682 5.9964 13 6 2.0401 -0.7211 -1.2493 14 7 1.6514 0.0375 -2.4457 15 6 2.1258 -0.6264 -3.6671 16 6 1.7097 0.1794 -4.8708 17 6 0.4962 -0.0699 -5.4845 18 6 0.1171 0.6694 -6.5878 19 6 0.9491 1.6600 -7.0823 20 6 2.1596 1.9133 -6.4650 21 6 2.5404 1.1672 -5.3621 22 6 2.8805 3.0290 -7.1908 23 6 2.1813 3.1390 -8.5624 24 6 0.7691 2.5952 -8.2589 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6055 -1.7198 1.2952 29 1 3.1264 -0.7994 1.2056 30 1 2.9245 -1.8412 4.7316 31 1 1.6055 -1.7197 -1.2952 32 1 3.1263 -0.7994 -1.2056 33 1 1.9881 0.9874 -2.3966 34 1 1.6921 -1.6245 -3.7301 35 1 3.2127 -0.7036 -3.6401 36 1 -0.1548 -0.8418 -5.1014 37 1 -0.8308 0.4738 -7.0669 38 1 3.4882 1.3613 -4.8821 39 1 3.9337 2.7803 -7.3220 40 1 2.7792 3.9633 -6.6386 41 1 2.6841 2.5188 -9.3044 42 1 2.1340 4.1761 -8.8946 43 1 0.3806 2.0502 -9.1191 44 1 0.0982 3.4122 -7.9932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331053367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:08 Heat of formation + Delta-G solvation = -22.012474 kcal Electronic energy + Delta-G solvation = -19958.258873 eV Core-core repulsion = 17065.975145 eV Total energy + Delta-G solvation = -2892.283728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02909 -38.53844 -36.99564 -35.30970 -33.86591 -32.26100 -30.43651 -28.87276 -28.33705 -26.94405 -25.45497 -23.92599 -23.19057 -21.64807 -21.29792 -20.54672 -18.49662 -17.24806 -16.71656 -16.60080 -16.27233 -16.07115 -15.87186 -15.58274 -15.30187 -14.52075 -14.26665 -14.10815 -13.72295 -13.66425 -13.57857 -13.27308 -13.15985 -13.01864 -12.76102 -12.59372 -12.45407 -12.22038 -12.06360 -12.00791 -11.91090 -11.70285 -11.58870 -11.48745 -11.09725 -10.91463 -10.54276 -9.70143 -9.40917 -9.22140 -8.17864 -6.26822 0.40279 0.50047 1.39601 1.40112 1.53247 2.41798 2.74903 3.15569 3.37994 3.56632 3.69548 3.90532 4.12334 4.15806 4.18214 4.19817 4.30515 4.37267 4.52886 4.54699 4.64716 4.68704 4.77161 4.83120 4.88688 4.93102 4.94075 4.97059 5.01908 5.10028 5.24118 5.28205 5.31299 5.36510 5.45767 5.50172 5.52904 5.55977 5.72952 5.73763 5.80750 5.88674 6.02055 6.14461 6.31181 6.44240 6.89250 7.41393 8.94458 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.002673 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.659983 B =10473.486281 C =10614.814333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.077 3.923 14 N -0.679 5.679 15 C 0.101 3.899 16 C -0.088 4.088 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.084 4.084 23 C -0.116 4.116 24 C -0.082 4.082 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.037 0.963 28 H -0.009 1.009 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.341 0.659 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 7.969 -26.588 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.052 4.052 14 N -0.310 5.310 15 C -0.027 4.027 16 C -0.088 4.088 17 C -0.128 4.128 18 C -0.135 4.135 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.153 4.153 24 C -0.119 4.119 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.009 0.991 29 H 0.005 0.995 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.159 0.841 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.761 7.569 -26.501 27.699 hybrid contribution 0.982 0.038 1.454 1.756 sum -1.779 7.606 -25.047 26.237 Atomic orbital electron populations 1.21477 0.94732 1.00397 1.00375 1.21006 0.96692 0.98358 0.93178 0.92953 1.19022 0.94134 0.94737 0.92684 1.21665 1.34297 1.08524 0.92079 0.92166 1.25959 0.95286 0.96132 1.02672 1.70102 1.40333 1.22990 1.24228 0.85450 0.78079 0.78883 0.78965 1.18617 1.20510 1.20488 1.21882 0.96699 0.97434 0.89221 1.60528 1.64005 1.05764 1.00677 1.20847 0.97556 0.97299 0.87035 1.19688 0.95277 0.97389 0.96453 1.21086 0.95834 1.00259 0.95635 1.20862 1.00125 0.95790 0.96745 1.20978 0.94898 0.96893 0.98408 1.20883 0.96728 0.97803 0.95875 1.20664 1.00068 0.95871 0.96692 1.21122 0.99561 0.95868 0.95549 1.22313 0.94341 1.02618 0.96013 1.21121 0.98645 0.97146 0.94955 0.91729 0.94506 0.94374 0.99072 0.99501 0.92934 0.91726 0.96196 0.84133 0.90153 0.94372 0.85353 0.84649 0.86178 0.90243 0.89884 0.90580 0.88792 0.89730 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 8.89 71.98 0.64 -3.78 16 2 C -0.07 -3.07 2.48 -10.79 -0.03 -3.09 16 3 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -30.26 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 C 0.08 2.69 5.07 86.30 0.44 3.12 16 14 N -0.68 -19.88 5.95 -517.94 -3.08 -22.96 16 15 C 0.10 2.55 5.81 85.56 0.50 3.04 16 16 C -0.09 -2.09 5.39 -19.89 -0.11 -2.20 16 17 C -0.11 -2.48 9.70 22.24 0.22 -2.26 16 18 C -0.12 -2.36 10.04 22.30 0.22 -2.14 16 19 C -0.11 -2.15 6.14 -19.59 -0.12 -2.27 16 20 C -0.11 -2.30 6.14 -19.59 -0.12 -2.42 16 21 C -0.11 -2.58 9.70 22.30 0.22 -2.37 16 22 C -0.08 -1.22 6.77 30.52 0.21 -1.02 16 23 C -0.12 -1.26 7.08 31.51 0.22 -1.03 16 24 C -0.08 -1.07 6.77 30.52 0.21 -0.86 16 25 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 26 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.34 9.72 8.72 -89.69 -0.78 8.94 16 34 H 0.08 1.98 8.09 -2.38 -0.02 1.96 16 35 H 0.04 0.94 8.08 -2.39 -0.02 0.92 16 36 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.21 355.22 2.71 -62.51 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.17 Total: 16.13 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 3.30 Total: -45.23 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.79 Total: -80.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.21 2.71 -62.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331053367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.493 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds