Wall clock time and date at job start Mon Mar 30 2020 20:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47233 * 2 1 4 4 C 1.50698 * 109.47442 * 239.99479 * 2 1 3 5 5 H 1.07993 * 120.00265 * 240.00201 * 4 2 1 6 6 C 1.37882 * 119.99600 * 59.99785 * 4 2 1 7 7 N 1.31509 * 120.00273 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99581 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47691 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47068 * 120.00494 * 8 6 4 11 11 H 1.48507 * 109.47104 * 240.00003 * 8 6 4 12 12 N 1.46903 * 109.47274 * 119.99176 * 2 1 3 13 13 C 1.46900 * 111.00117 * 275.00575 * 12 2 1 14 14 C 1.50703 * 109.46725 * 180.02562 * 13 12 2 15 15 C 1.38256 * 120.00325 * 89.99976 * 14 13 12 16 16 C 1.38211 * 120.00062 * 180.27920 * 15 14 13 17 17 C 1.38259 * 119.99788 * 359.45940 * 16 15 14 18 18 C 1.38212 * 120.00042 * 0.55987 * 17 16 15 19 19 C 1.50706 * 120.00242 * 179.72473 * 18 17 16 20 20 C 1.53001 * 109.46610 * 269.97970 * 19 18 17 21 21 C 1.53782 * 113.61092 * 272.49106 * 20 19 18 22 22 C 1.53777 * 87.08289 * 220.02098 * 21 20 19 23 23 C 1.53784 * 113.61205 * 174.99803 * 20 19 18 24 24 C 1.38214 * 119.99514 * 270.01578 * 14 13 12 25 25 H 1.08997 * 109.47272 * 60.00238 * 1 2 3 26 26 H 1.09000 * 109.47413 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47251 * 300.00955 * 1 2 3 28 28 H 0.97004 * 120.00273 * 179.97438 * 7 6 4 29 29 H 1.00901 * 111.00165 * 151.04374 * 12 2 1 30 30 H 1.08988 * 109.47477 * 59.99515 * 13 12 2 31 31 H 1.09000 * 109.46566 * 299.99338 * 13 12 2 32 32 H 1.08002 * 119.99676 * 359.97438 * 15 14 13 33 33 H 1.07998 * 120.00348 * 179.72205 * 16 15 14 34 34 H 1.07999 * 119.99944 * 180.28381 * 17 16 15 35 35 H 1.08997 * 109.46761 * 29.97146 * 19 18 17 36 36 H 1.08995 * 109.47452 * 149.97636 * 19 18 17 37 37 H 1.08994 * 112.85438 * 43.80183 * 20 19 18 38 38 H 1.08996 * 113.61749 * 334.57471 * 21 20 19 39 39 H 1.09003 * 113.61011 * 105.47463 * 21 20 19 40 40 H 1.08999 * 113.62122 * 270.89049 * 22 21 20 41 41 H 1.09000 * 113.61733 * 139.98247 * 22 21 20 42 42 H 1.08996 * 113.61479 * 254.53003 * 23 20 19 43 43 H 1.09003 * 113.61431 * 25.34926 * 23 20 19 44 44 H 1.07997 * 120.00449 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 3.1455 -2.2879 -3.6036 10 1 1.1661 -1.5870 -4.8159 11 1 3.1467 -0.1876 -4.8164 12 7 2.0197 -0.6923 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5885 -0.5212 3.5558 15 6 3.9450 -0.5729 3.8179 16 6 4.4095 -1.2601 4.9234 17 6 3.5168 -1.8865 5.7733 18 6 2.1608 -1.8352 5.5111 19 6 1.1882 -2.5231 6.4341 20 6 0.9651 -3.9607 5.9601 21 6 -0.1563 -4.0982 4.9168 22 6 -0.5686 -5.3881 5.6454 23 6 0.0802 -4.7906 6.9051 24 6 1.6965 -1.1522 4.4023 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 0.7095 1.1615 -3.4845 29 1 2.9173 -1.1204 1.0289 30 1 1.0871 0.6166 2.5525 31 1 2.7588 1.0464 2.1181 32 1 4.6420 -0.0804 3.1560 33 1 5.4695 -1.3043 5.1257 34 1 3.8795 -2.4197 6.6397 35 1 1.5927 -2.5330 7.4462 36 1 0.2393 -1.9869 6.4273 37 1 1.8908 -4.4614 5.6767 38 1 -0.9040 -3.3071 4.9725 39 1 0.2084 -4.2666 3.9035 40 1 -0.0628 -6.2797 5.2749 41 1 -1.6478 -5.5164 5.7291 42 1 0.6358 -5.5179 7.4971 43 1 -0.6019 -4.1886 7.5056 44 1 0.6369 -1.1124 4.1972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560574624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:22 Heat of formation + Delta-G solvation = 23.222567 kcal Electronic energy + Delta-G solvation = -20509.112681 eV Core-core repulsion = 17618.790491 eV Total energy + Delta-G solvation = -2890.322189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.67162 -38.43870 -35.87542 -33.24093 -32.24768 -30.90758 -28.36498 -27.68875 -25.63559 -25.35214 -24.21326 -23.46311 -21.67498 -20.12828 -19.70303 -19.37800 -16.71926 -16.15743 -15.68527 -15.28633 -14.90749 -14.82710 -14.52016 -13.90101 -13.64530 -13.39015 -13.02907 -12.84863 -12.50019 -12.36084 -12.33744 -11.86554 -11.71738 -11.53004 -11.27885 -11.01944 -10.95144 -10.74503 -10.62480 -10.58120 -10.28147 -10.21722 -10.13921 -10.10687 -9.90742 -8.83508 -8.52284 -8.48110 -8.34748 -7.24819 -6.02518 -4.08781 1.59105 1.65961 3.28802 3.36684 3.41235 3.97333 4.41196 4.48557 4.57523 4.71608 4.81871 5.01346 5.10505 5.15338 5.28815 5.33897 5.44961 5.48279 5.59359 5.61040 5.65878 5.69060 5.76038 5.80418 5.82810 5.93260 6.04013 6.08032 6.18953 6.21852 6.37669 6.39650 6.46473 6.69481 6.80696 6.87276 7.00986 7.14557 7.23682 7.27138 7.50756 7.78856 7.90167 8.27794 8.39603 8.67479 9.02136 9.57224 11.03849 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.003914 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.813065 B = 7152.624622 C = 7925.856877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.681 5.681 13 C 0.095 3.905 14 C -0.063 4.063 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.084 4.084 19 C -0.068 4.068 20 C -0.102 4.102 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.094 4.094 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.003 0.997 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -6.774 18.708 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.312 5.312 13 C -0.034 4.034 14 C -0.063 4.063 15 C -0.140 4.140 16 C -0.138 4.138 17 C -0.148 4.148 18 C -0.084 4.084 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.173 4.173 22 C -0.181 4.181 23 C -0.176 4.176 24 C -0.113 4.113 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.414 -6.893 18.712 19.946 hybrid contribution 1.129 0.132 -1.196 1.650 sum 1.544 -6.761 17.516 18.839 Atomic orbital electron populations 1.21706 0.97850 0.99328 0.99304 1.19140 0.92665 0.92349 0.85565 0.98155 1.21299 1.31348 1.12474 0.90419 0.92176 1.24918 0.95054 0.94999 0.99039 1.69907 1.36736 1.22921 1.23337 0.86473 0.78622 0.79631 0.82870 1.19746 1.20961 1.21098 1.60786 1.32193 1.32681 1.05532 1.20909 0.99795 0.93331 0.89412 1.20051 0.93112 0.97271 0.95867 1.21064 0.95235 1.00132 0.97592 1.21014 0.99115 0.98389 0.95327 1.20891 0.92828 1.01074 0.99973 1.19797 0.94032 0.98192 0.96333 1.20567 0.98098 0.94561 0.97327 1.22523 0.97883 0.94712 0.96954 1.22966 0.97991 0.97515 0.98841 1.22805 1.00447 0.97823 0.97070 1.22971 0.99000 0.99174 0.96445 1.20891 0.99668 0.97015 0.93716 0.90120 0.94964 0.97756 0.92992 0.85181 0.91082 0.95487 0.86515 0.86643 0.86841 0.91324 0.91100 0.89318 0.90120 0.91077 0.90412 0.91704 0.91869 0.90260 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.38 2.60 -68.87 -0.18 5.21 16 3 H 0.00 0.02 7.80 -51.92 -0.40 -0.38 16 4 C -0.52 -14.31 8.59 -34.44 -0.30 -14.61 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.68 -14.83 6.29 -109.22 -0.69 -15.52 16 13 C 0.09 1.76 5.61 -4.97 -0.03 1.74 16 14 C -0.06 -1.01 5.39 -104.62 -0.56 -1.57 16 15 C -0.12 -1.79 9.70 -39.58 -0.38 -2.17 16 16 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 17 C -0.13 -1.59 9.70 -39.58 -0.38 -1.98 16 18 C -0.08 -1.07 5.12 -104.62 -0.54 -1.61 16 19 C -0.07 -0.71 5.18 -27.88 -0.14 -0.85 16 20 C -0.10 -1.04 3.64 -89.80 -0.33 -1.37 16 21 C -0.14 -1.49 7.63 -25.92 -0.20 -1.69 16 22 C -0.14 -1.34 8.08 -25.92 -0.21 -1.55 16 23 C -0.14 -1.20 7.64 -25.92 -0.20 -1.40 16 24 C -0.09 -1.41 9.36 -39.58 -0.37 -1.78 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.33 7.17 8.22 -39.29 -0.32 6.85 16 30 H 0.07 1.33 7.38 -51.94 -0.38 0.95 16 31 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 37 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 38 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 44 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -28.58 355.04 -11.34 -39.92 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.65 Total: 5.55 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -3.97 Total: -26.73 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.06 Total: -40.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.58 -11.34 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560574624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.144 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds