Wall clock time and date at job start Mon Mar 30 2020 20:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47233 * 2 1 4 4 C 1.50698 * 109.47442 * 239.99479 * 2 1 3 5 5 H 1.07993 * 120.00265 * 240.00201 * 4 2 1 6 6 C 1.37882 * 119.99600 * 59.99785 * 4 2 1 7 7 N 1.31509 * 120.00273 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99581 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47691 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47068 * 120.00494 * 8 6 4 11 11 H 1.48507 * 109.47104 * 240.00003 * 8 6 4 12 12 N 1.46903 * 109.47274 * 119.99176 * 2 1 3 13 13 C 1.46900 * 111.00117 * 275.00575 * 12 2 1 14 14 C 1.50703 * 109.46725 * 180.02562 * 13 12 2 15 15 C 1.38256 * 120.00325 * 89.99976 * 14 13 12 16 16 C 1.38211 * 120.00062 * 180.27920 * 15 14 13 17 17 C 1.38259 * 119.99788 * 359.45940 * 16 15 14 18 18 C 1.38212 * 120.00042 * 0.55987 * 17 16 15 19 19 C 1.50706 * 120.00242 * 179.72473 * 18 17 16 20 20 C 1.53001 * 109.46610 * 269.97970 * 19 18 17 21 21 C 1.53782 * 113.61092 * 272.49106 * 20 19 18 22 22 C 1.53777 * 87.08289 * 220.02098 * 21 20 19 23 23 C 1.53784 * 113.61205 * 174.99803 * 20 19 18 24 24 C 1.38214 * 119.99514 * 270.01578 * 14 13 12 25 25 H 1.08997 * 109.47272 * 60.00238 * 1 2 3 26 26 H 1.09000 * 109.47413 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47251 * 300.00955 * 1 2 3 28 28 H 0.97004 * 120.00273 * 179.97438 * 7 6 4 29 29 H 1.00901 * 111.00165 * 151.04374 * 12 2 1 30 30 H 1.08988 * 109.47477 * 59.99515 * 13 12 2 31 31 H 1.09000 * 109.46566 * 299.99338 * 13 12 2 32 32 H 1.08002 * 119.99676 * 359.97438 * 15 14 13 33 33 H 1.07998 * 120.00348 * 179.72205 * 16 15 14 34 34 H 1.07999 * 119.99944 * 180.28381 * 17 16 15 35 35 H 1.08997 * 109.46761 * 29.97146 * 19 18 17 36 36 H 1.08995 * 109.47452 * 149.97636 * 19 18 17 37 37 H 1.08994 * 112.85438 * 43.80183 * 20 19 18 38 38 H 1.08996 * 113.61749 * 334.57471 * 21 20 19 39 39 H 1.09003 * 113.61011 * 105.47463 * 21 20 19 40 40 H 1.08999 * 113.62122 * 270.89049 * 22 21 20 41 41 H 1.09000 * 113.61733 * 139.98247 * 22 21 20 42 42 H 1.08996 * 113.61479 * 254.53003 * 23 20 19 43 43 H 1.09003 * 113.61431 * 25.34926 * 23 20 19 44 44 H 1.07997 * 120.00449 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 3.1455 -2.2879 -3.6036 10 1 1.1661 -1.5870 -4.8159 11 1 3.1467 -0.1876 -4.8164 12 7 2.0197 -0.6923 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5885 -0.5212 3.5558 15 6 3.9450 -0.5729 3.8179 16 6 4.4095 -1.2601 4.9234 17 6 3.5168 -1.8865 5.7733 18 6 2.1608 -1.8352 5.5111 19 6 1.1882 -2.5231 6.4341 20 6 0.9651 -3.9607 5.9601 21 6 -0.1563 -4.0982 4.9168 22 6 -0.5686 -5.3881 5.6454 23 6 0.0802 -4.7906 6.9051 24 6 1.6965 -1.1522 4.4023 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 0.7095 1.1615 -3.4845 29 1 2.9173 -1.1204 1.0289 30 1 1.0871 0.6166 2.5525 31 1 2.7588 1.0464 2.1181 32 1 4.6420 -0.0804 3.1560 33 1 5.4695 -1.3043 5.1257 34 1 3.8795 -2.4197 6.6397 35 1 1.5927 -2.5330 7.4462 36 1 0.2393 -1.9869 6.4273 37 1 1.8908 -4.4614 5.6767 38 1 -0.9040 -3.3071 4.9725 39 1 0.2084 -4.2666 3.9035 40 1 -0.0628 -6.2797 5.2749 41 1 -1.6478 -5.5164 5.7291 42 1 0.6358 -5.5179 7.4971 43 1 -0.6019 -4.1886 7.5056 44 1 0.6369 -1.1124 4.1972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560574624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:21 Heat of formation + Delta-G solvation = 9.648299 kcal Electronic energy + Delta-G solvation = -20509.701305 eV Core-core repulsion = 17618.790491 eV Total energy + Delta-G solvation = -2890.910814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66454 -39.36901 -37.64931 -34.92101 -33.51920 -32.36590 -29.96903 -28.78283 -27.41975 -26.40948 -25.79587 -24.33883 -22.76858 -21.81689 -21.14207 -20.16934 -18.61950 -17.36223 -16.96558 -16.60585 -16.31321 -15.77158 -15.68418 -15.46826 -15.35544 -14.75765 -14.24475 -13.95820 -13.81418 -13.57680 -13.39553 -13.25551 -13.01108 -12.85897 -12.77051 -12.65692 -12.44309 -12.25102 -12.22437 -12.03091 -11.89048 -11.54885 -11.41720 -11.01651 -10.98109 -10.91137 -10.60179 -9.63857 -9.45710 -9.06615 -8.15407 -6.29892 0.49584 0.57342 1.39967 1.41698 1.53817 2.40056 2.87590 3.13200 3.67408 3.74067 3.79023 3.91939 3.97991 4.04684 4.10103 4.21646 4.32737 4.43319 4.56778 4.64900 4.66550 4.73724 4.79106 4.83431 4.91441 4.94577 4.96258 5.04601 5.09693 5.12987 5.18301 5.20728 5.25834 5.28421 5.43595 5.46483 5.62286 5.64751 5.67433 5.77047 5.83160 5.84560 6.18963 6.20651 6.43580 6.72836 6.95568 7.40579 8.90564 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.003914 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.813065 B = 7152.624622 C = 7925.856877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.214 3.786 3 H -0.030 1.030 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.678 5.678 13 C 0.101 3.899 14 C -0.083 4.083 15 C -0.135 4.135 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.082 4.082 19 C -0.065 4.065 20 C -0.101 4.101 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.126 4.126 24 C -0.108 4.108 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.021 0.979 28 H 0.263 0.737 29 H 0.331 0.669 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -8.312 20.554 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.013 1.013 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.204 1.204 12 N -0.308 5.308 13 C -0.028 4.028 14 C -0.084 4.084 15 C -0.153 4.153 16 C -0.136 4.136 17 C -0.143 4.143 18 C -0.082 4.082 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.184 4.184 22 C -0.180 4.180 23 C -0.163 4.163 24 C -0.127 4.127 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.135 0.865 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.271 -8.432 20.577 22.274 hybrid contribution 0.868 0.622 -1.703 2.010 sum 2.138 -7.810 18.874 20.538 Atomic orbital electron populations 1.21526 0.97636 0.98801 0.99019 1.18959 0.92829 0.90805 0.86829 1.01257 1.21589 1.31748 1.12675 0.91602 0.92428 1.25737 0.95108 0.95664 1.02040 1.70028 1.37439 1.24036 1.24182 0.85421 0.78159 0.78582 0.78938 1.19157 1.20465 1.20449 1.60702 1.32166 1.32971 1.04973 1.20834 0.99476 0.93024 0.89454 1.19848 0.94196 0.98834 0.95501 1.21170 0.94540 1.00934 0.98698 1.21337 1.00758 0.97216 0.94286 1.21294 0.92349 1.00151 1.00480 1.20074 0.95112 0.97273 0.95719 1.20606 0.97680 0.94180 0.97729 1.22490 0.97466 0.94883 0.97084 1.23016 0.98742 0.98746 0.97944 1.22817 1.01028 0.96946 0.97208 1.22921 0.98514 0.98929 0.95965 1.20927 0.99181 0.97865 0.94697 0.92329 0.95410 0.96040 0.92761 0.85216 0.91731 0.96115 0.86504 0.83918 0.83731 0.89112 0.90968 0.89934 0.90385 0.93623 0.90283 0.91064 0.90543 0.89240 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.76 9.19 71.98 0.66 -5.10 16 2 C 0.21 11.34 2.60 44.17 0.11 11.45 16 3 H -0.03 -1.75 7.80 -2.38 -0.02 -1.77 16 4 C -0.54 -30.37 8.59 25.60 0.22 -30.15 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.68 -30.45 6.29 -499.46 -3.14 -33.59 16 13 C 0.10 3.90 5.61 85.56 0.48 4.38 16 14 C -0.08 -2.72 5.39 -19.86 -0.11 -2.83 16 15 C -0.13 -3.89 9.70 22.27 0.22 -3.67 16 16 C -0.12 -2.76 10.05 22.27 0.22 -2.53 16 17 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 18 C -0.08 -1.95 5.12 -19.86 -0.10 -2.05 16 19 C -0.06 -1.18 5.18 29.85 0.15 -1.03 16 20 C -0.10 -1.86 3.64 -10.27 -0.04 -1.90 16 21 C -0.15 -3.17 7.63 31.12 0.24 -2.93 16 22 C -0.14 -2.44 8.08 31.12 0.25 -2.19 16 23 C -0.13 -1.83 7.64 31.12 0.24 -1.59 16 24 C -0.11 -3.21 9.36 22.27 0.21 -3.00 16 25 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.02 0.98 7.45 -2.38 -0.02 0.96 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.33 14.75 8.22 -89.69 -0.74 14.02 16 30 H 0.06 2.52 7.38 -2.39 -0.02 2.50 16 31 H 0.02 0.82 8.00 -2.39 -0.02 0.80 16 32 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 33 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.07 1.32 7.79 -2.39 -0.02 1.30 16 37 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 38 H 0.08 1.69 7.90 -2.39 -0.02 1.67 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 1.14 8.10 -2.39 -0.02 1.12 16 44 H 0.11 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -61.81 355.04 2.77 -59.04 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.22 Total: 26.21 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.43 Total: -44.39 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.90 Total: -86.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -61.81 2.77 -59.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560574624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.691 kcal (2) G-P(sol) polarization free energy of solvation -61.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds