Wall clock time and date at job start Mon Mar 30 2020 20:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36806 * 120.00349 * 2 1 4 4 H 1.07998 * 119.99962 * 171.41977 * 3 2 1 5 5 C 1.39094 * 119.99846 * 351.41994 * 3 2 1 6 6 N 1.31331 * 120.00165 * 7.65656 * 5 3 2 7 7 Si 1.86805 * 119.99935 * 187.65927 * 5 3 2 8 8 H 1.48499 * 109.47048 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47015 * 120.00216 * 7 5 3 10 10 H 1.48501 * 109.46620 * 239.99640 * 7 5 3 11 11 C 1.34777 * 119.99985 * 180.02562 * 2 1 3 12 12 O 1.21571 * 120.00285 * 183.54547 * 11 2 1 13 13 C 1.47926 * 119.99851 * 3.82197 * 11 2 1 14 14 C 1.39991 * 120.93206 * 304.08995 * 13 11 2 15 15 C 1.37997 * 119.04317 * 179.77380 * 14 13 11 16 16 N 1.31897 * 120.96259 * 0.51346 * 15 14 13 17 17 C 1.31866 * 122.07381 * 359.73989 * 16 15 14 18 18 Cl 1.73601 * 119.57916 * 179.97438 * 17 16 15 19 19 C 1.38490 * 120.83950 * 359.97438 * 17 16 15 20 20 Cl 1.73603 * 120.52533 * 179.97438 * 19 17 16 21 21 H 1.08998 * 109.47267 * 177.11819 * 1 2 3 22 22 H 1.09004 * 109.47126 * 297.12507 * 1 2 3 23 23 H 1.09009 * 109.46967 * 57.11672 * 1 2 3 24 24 H 0.97004 * 120.00331 * 180.02562 * 6 5 3 25 25 H 1.08008 * 120.47748 * 0.02562 * 14 13 11 26 26 H 1.07996 * 119.51758 * 180.27245 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1847 0.0000 4 1 3.2200 1.1899 0.1395 5 6 1.4653 2.3826 -0.1797 6 7 0.1522 2.3927 -0.1988 7 14 2.4148 3.9770 -0.3940 8 1 3.8720 3.6972 -0.3340 9 1 2.0797 4.5797 -1.7091 10 1 2.0474 4.9215 0.6914 11 6 2.1388 -1.1672 -0.0005 12 8 3.3528 -1.1683 0.0646 13 6 1.4016 -2.4468 -0.0865 14 6 0.4034 -2.7659 0.8417 15 6 -0.2630 -3.9684 0.7220 16 7 0.0355 -4.8165 -0.2431 17 6 0.9714 -4.5601 -1.1360 18 17 1.3117 -5.7234 -2.3789 19 6 1.6863 -3.3747 -1.0948 20 17 2.9172 -3.0459 -2.2740 21 1 -0.3634 -1.0263 -0.0517 22 1 -0.3633 0.4686 0.9147 23 1 -0.3633 0.5580 -0.8631 24 1 -0.3247 3.2281 -0.3245 25 1 0.1555 -2.0791 1.6375 26 1 -1.0375 -4.2204 1.4312 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598388307.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:40 Heat of formation + Delta-G solvation = 10.925808 kcal Electronic energy + Delta-G solvation = -16606.977040 eV Core-core repulsion = 13545.639649 eV Total energy + Delta-G solvation = -3061.337391 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 274.002 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35551 -38.27833 -36.62177 -36.30467 -34.93023 -32.68674 -31.48991 -30.78383 -26.68471 -25.42012 -23.57825 -23.44323 -20.03104 -17.53247 -16.99885 -16.76573 -16.22708 -15.57243 -14.74690 -14.52575 -14.30837 -14.08587 -13.77603 -12.75991 -12.45029 -11.98050 -11.80806 -11.69549 -11.56106 -11.43279 -11.17429 -10.99794 -10.65053 -10.45976 -10.44666 -9.85170 -9.39612 -9.21949 -8.73812 -8.62783 -8.11783 -6.49948 -4.00924 0.83890 0.93061 1.75009 2.25298 3.01088 3.13942 3.21059 3.40450 3.75303 3.93973 4.35461 4.61423 4.79078 4.92001 5.13462 5.14998 5.33162 5.79970 6.01941 6.15511 6.33800 6.84777 7.20034 7.35526 7.61326 7.80694 8.23550 8.93331 9.14625 9.70156 10.42150 Molecular weight = 274.00amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.005895 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.006017 B = 4748.956911 C = 5260.317408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.419 5.419 3 C -0.295 4.295 4 H 0.111 0.889 5 C 0.030 3.970 6 N -0.873 5.873 7 Si 0.935 3.065 8 H -0.265 1.265 9 H -0.278 1.278 10 H -0.279 1.279 11 C 0.457 3.543 12 O -0.571 6.571 13 C -0.019 4.019 14 C -0.139 4.139 15 C 0.112 3.888 16 N -0.470 5.470 17 C 0.178 3.822 18 Cl -0.021 7.021 19 C -0.051 4.051 20 Cl -0.020 7.020 21 H 0.028 0.972 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.270 0.730 25 H 0.154 0.846 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 -8.834 -0.568 9.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.135 5.135 3 C -0.423 4.423 4 H 0.129 0.871 5 C -0.174 4.174 6 N -0.512 5.512 7 Si 0.761 3.239 8 H -0.189 1.189 9 H -0.203 1.203 10 H -0.205 1.205 11 C 0.244 3.756 12 O -0.457 6.457 13 C -0.032 4.032 14 C -0.160 4.160 15 C -0.044 4.044 16 N -0.182 5.182 17 C 0.012 3.988 18 Cl 0.007 6.993 19 C -0.082 4.082 20 Cl 0.009 6.991 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.172 0.828 26 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.395 -9.476 -0.825 10.100 hybrid contribution 0.609 1.464 -0.219 1.600 sum -2.786 -8.013 -1.044 8.547 Atomic orbital electron populations 1.22185 0.79989 0.97236 1.05199 1.43650 1.06347 1.04573 1.58894 1.19962 0.94417 0.81790 1.46111 0.87082 1.25464 0.95850 1.00127 0.95925 1.70119 1.06271 1.27839 1.46999 0.85707 0.79938 0.80147 0.78119 1.18877 1.20313 1.20451 1.17309 0.87282 0.82215 0.88751 1.90672 1.12398 1.85700 1.56897 1.20710 0.94177 0.96066 0.92245 1.22518 0.95317 0.98393 0.99767 1.22629 0.98253 0.89170 0.94365 1.66964 1.14498 1.33553 1.03230 1.21312 0.94862 0.89085 0.93508 1.98398 1.93378 1.58377 1.49124 1.21658 0.96142 0.94857 0.95568 1.98401 1.51074 1.95050 1.54536 0.95328 0.91650 0.89305 0.91861 0.82841 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.07 8.21 59.84 0.49 2.56 15 2 N -0.42 -10.25 3.02 -123.25 -0.37 -10.63 15 3 C -0.30 -7.76 9.54 -15.01 -0.14 -7.91 15 4 H 0.11 3.07 7.19 -52.49 -0.38 2.70 15 5 C 0.03 0.74 5.45 -17.45 -0.10 0.65 15 6 N -0.87 -21.32 9.49 55.50 0.53 -20.79 15 7 Si 0.94 19.60 29.56 -169.99 -5.03 14.57 15 8 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 10 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 11 C 0.46 10.89 6.60 -12.29 -0.08 10.81 15 12 O -0.57 -15.43 15.95 5.30 0.08 -15.34 15 13 C -0.02 -0.38 4.84 -104.63 -0.51 -0.88 15 14 C -0.14 -2.16 7.54 -39.01 -0.29 -2.45 15 15 C 0.11 1.50 11.17 -17.61 -0.20 1.30 15 16 N -0.47 -7.31 10.31 -10.39 -0.11 -7.42 15 17 C 0.18 2.97 7.27 -17.44 -0.13 2.84 15 18 Cl -0.02 -0.31 28.13 -51.86 -1.46 -1.77 15 19 C -0.05 -0.94 6.38 -38.85 -0.25 -1.19 15 20 Cl -0.02 -0.38 26.63 -51.86 -1.38 -1.76 15 21 H 0.03 0.52 4.56 -51.93 -0.24 0.28 15 22 H 0.06 1.41 7.54 -51.93 -0.39 1.02 15 23 H 0.09 2.05 6.51 -51.92 -0.34 1.71 15 24 H 0.27 6.23 8.31 -40.82 -0.34 5.89 15 25 H 0.15 2.13 7.55 -52.48 -0.40 1.73 15 26 H 0.17 1.56 8.06 -52.49 -0.42 1.14 15 LS Contribution 261.13 15.07 3.94 3.94 Total: -1.00 -28.61 261.13 -6.29 -34.91 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -1.30 Total: -1.43 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.20 Total: 5.72 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.05 Total: -38.84 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.34 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -2.84 Total: -3.53 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.61 -6.29 -34.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598388307.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.833 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds