Wall clock time and date at job start Mon Mar 30 2020 20:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00598 * 2 1 4 4 H 1.48491 * 109.47449 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47124 * 300.00468 * 3 2 1 6 6 H 1.48501 * 109.46741 * 59.99724 * 3 2 1 7 7 C 1.38802 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00360 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47482 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27682 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 C 1.53006 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.50699 * 112.85317 * 48.80620 * 15 14 13 17 17 O 1.20822 * 120.00267 * 129.66021 * 16 15 14 18 18 O 1.34228 * 119.99764 * 309.66869 * 16 15 14 19 19 C 1.53785 * 113.61667 * 277.49698 * 15 14 13 20 20 C 1.53779 * 87.08221 * 220.02357 * 19 15 14 21 21 C 1.53779 * 87.08356 * 25.43015 * 20 19 15 22 22 H 0.96999 * 119.99316 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47402 * 59.99931 * 10 9 7 24 24 H 1.09006 * 109.47116 * 299.99821 * 10 9 7 25 25 H 1.08997 * 109.47380 * 299.99656 * 14 13 11 26 26 H 1.08997 * 109.47403 * 60.00337 * 14 13 11 27 27 H 0.96697 * 117.00158 * 179.97438 * 18 16 15 28 28 H 1.09004 * 113.60990 * 334.57067 * 19 15 14 29 29 H 1.09001 * 113.61275 * 105.47092 * 19 15 14 30 30 H 1.08997 * 113.61076 * 270.88384 * 20 19 15 31 31 H 1.09000 * 113.61399 * 139.98263 * 20 19 15 32 32 H 1.08999 * 113.61931 * 220.01698 * 21 20 19 33 33 H 1.09000 * 113.61452 * 89.11753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7952 -5.5015 -0.0011 13 8 2.8402 -6.3390 0.0043 14 6 2.2605 -7.6702 0.0097 15 6 3.3794 -8.7137 0.0148 16 6 4.4306 -8.4396 1.0593 17 8 4.7720 -9.3161 1.8176 18 8 4.9875 -7.2214 1.1473 19 6 3.9563 -9.0055 -1.3806 20 6 4.0050 -10.4852 -0.9648 21 6 2.8689 -10.1644 0.0207 22 1 -0.4849 0.8401 -0.0004 23 1 3.1242 -3.7315 0.8894 24 1 3.1242 -3.7315 -0.8906 25 1 1.6434 -7.7943 0.8996 26 1 1.6453 -7.8022 -0.8804 27 1 5.6569 -7.0933 1.8332 28 1 3.2580 -8.8029 -2.1927 29 1 4.9398 -8.5660 -1.5470 30 1 4.9373 -10.7714 -0.4781 31 1 3.7129 -11.1718 -1.7594 32 1 2.9746 -10.6606 0.9854 33 1 1.8734 -10.2786 -0.4083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:19 Heat of formation + Delta-G solvation = -158.785195 kcal Electronic energy + Delta-G solvation = -18747.786388 eV Core-core repulsion = 15479.797756 eV Total energy + Delta-G solvation = -3267.988633 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.075 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27964 -39.86144 -38.35226 -36.27499 -35.83768 -32.48976 -30.46378 -28.89574 -26.15333 -25.58114 -24.81128 -22.57117 -20.87300 -19.59789 -18.12963 -17.81419 -17.27543 -16.73722 -16.46193 -15.94964 -15.36574 -14.85244 -14.81575 -14.40705 -14.13083 -13.84734 -13.13127 -12.84117 -12.73160 -12.57044 -12.10797 -11.96846 -11.66018 -11.36244 -11.10249 -11.08748 -11.03915 -10.85936 -10.78859 -10.60170 -10.35457 -9.98640 -9.88562 -9.12798 -8.35459 -6.60565 -6.28000 -4.00395 1.95073 2.59663 2.66880 2.77863 3.19222 3.23055 3.28821 3.49145 4.03283 4.06908 4.14320 4.38265 4.40581 4.82540 4.99113 5.08076 5.11526 5.24992 5.29710 5.37931 5.38861 5.56033 5.57041 5.65801 5.68134 5.79922 5.95309 6.10196 6.34712 6.66456 7.55342 7.77012 8.17472 8.30230 9.17771 10.79594 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.038892 B = 0.003624 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.770208 B = 7725.219257 C = 8080.260622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.061 6.061 10 C -0.126 4.126 11 C 0.478 3.522 12 O -0.491 6.491 13 O -0.343 6.343 14 C 0.082 3.918 15 C -0.086 4.086 16 C 0.510 3.490 17 O -0.518 6.518 18 O -0.488 6.488 19 C -0.116 4.116 20 C -0.144 4.144 21 C -0.112 4.112 22 H 0.269 0.731 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.407 0.593 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.120 -18.173 -1.440 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.165 5.835 10 C -0.274 4.274 11 C 0.320 3.680 12 O -0.377 6.377 13 O -0.260 6.260 14 C 0.007 3.993 15 C -0.087 4.087 16 C 0.352 3.648 17 O -0.407 6.407 18 O -0.298 6.298 19 C -0.153 4.153 20 C -0.181 4.181 21 C -0.150 4.150 22 H 0.079 0.921 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.265 0.735 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.272 -18.645 -1.539 20.072 hybrid contribution 2.188 1.367 0.540 2.636 sum 9.460 -17.278 -1.000 19.724 Atomic orbital electron populations 1.70024 1.05990 1.27508 1.46728 1.25006 0.95061 0.99119 0.94355 0.86069 0.79621 0.81607 0.77935 1.19496 1.20514 1.20520 1.22885 0.95057 0.91142 1.59210 0.90530 1.85411 1.04522 0.96649 1.96884 1.23268 1.06812 0.90810 1.06485 1.23345 0.85157 0.87214 0.72278 1.90672 1.16993 1.85700 1.44366 1.86640 1.40374 1.14388 1.84644 1.22859 0.93661 0.79088 1.03660 1.21791 0.94064 0.96864 0.95993 1.22385 0.80243 0.79625 0.82589 1.90699 1.61193 1.46524 1.42296 1.84688 1.54343 1.33449 1.57292 1.23008 1.02552 0.96184 0.93605 1.22922 0.99336 0.96616 0.99216 1.22935 0.99590 0.90550 1.01887 0.92137 0.87924 0.87934 0.90678 0.89647 0.73450 0.88033 0.90209 0.89647 0.90243 0.89277 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.92 9.50 30.94 0.29 -14.63 16 8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.13 -2.54 6.27 36.00 0.23 -2.31 16 11 C 0.48 9.01 7.98 36.00 0.29 9.30 16 12 O -0.49 -10.58 15.61 -18.76 -0.29 -10.88 16 13 O -0.34 -5.27 8.45 -46.07 -0.39 -5.66 16 14 C 0.08 1.01 4.92 37.16 0.18 1.19 16 15 C -0.09 -0.88 1.16 -154.84 -0.18 -1.06 16 16 C 0.51 5.98 7.10 36.00 0.26 6.24 16 17 O -0.52 -7.02 16.59 -18.75 -0.31 -7.33 16 18 O -0.49 -5.28 11.77 -46.09 -0.54 -5.82 16 19 C -0.12 -0.96 7.22 -25.92 -0.19 -1.15 16 20 C -0.14 -1.05 7.75 -25.92 -0.20 -1.25 16 21 C -0.11 -0.91 7.02 -25.92 -0.18 -1.09 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 24 H 0.10 1.92 8.14 -51.91 -0.42 1.49 16 25 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 26 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 27 H 0.41 2.64 9.10 45.56 0.41 3.05 16 28 H 0.10 0.74 7.96 -51.93 -0.41 0.33 16 29 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.80 7.42 -51.93 -0.39 0.42 16 33 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 306.92 15.07 4.63 4.63 Total: -1.00 -34.33 306.92 -6.31 -40.64 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.29 Total: -0.06 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 0.40 Total: -2.79 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.73 Total: -24.92 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.54 Total: -29.69 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.33 -6.31 -40.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.144 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds