Wall clock time and date at job start Mon Mar 30 2020 20:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36652 * 120.14360 * 2 1 4 4 C 1.38800 * 120.44683 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.74674 * 0.02778 * 4 3 2 6 6 C 1.38992 * 119.85275 * 359.94990 * 5 4 3 7 7 O 1.34715 * 133.23089 * 180.38143 * 6 5 4 8 8 C 1.34968 * 110.86178 * 180.13505 * 7 6 5 9 9 C 1.46805 * 125.14091 * 179.81409 * 8 7 6 10 10 O 1.21576 * 120.00249 * 179.69237 * 9 8 7 11 11 O 1.34861 * 119.99545 * 359.69725 * 9 8 7 12 12 C 1.45206 * 116.99743 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47070 * 329.99867 * 12 11 9 14 14 C 1.53002 * 109.47129 * 90.00073 * 12 11 9 15 15 C 1.50701 * 109.47004 * 209.99974 * 12 11 9 16 16 H 1.07995 * 119.99918 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99755 * 180.02562 * 15 12 11 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47152 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46821 * 119.99784 * 19 17 15 22 22 H 1.48501 * 109.46922 * 240.00237 * 19 17 15 23 23 C 1.35897 * 109.72402 * 359.55050 * 8 7 6 24 24 C 1.39680 * 120.14563 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47375 * 269.97476 * 1 2 3 26 26 H 1.09009 * 109.47433 * 29.97850 * 1 2 3 27 27 H 1.09003 * 109.47096 * 149.97233 * 1 2 3 28 28 H 1.08002 * 119.77987 * 0.04325 * 3 2 1 29 29 H 1.07992 * 119.62684 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.07522 * 179.97438 * 5 4 3 31 31 H 1.08992 * 109.47060 * 179.97438 * 14 12 11 32 32 H 1.09004 * 109.46930 * 299.99887 * 14 12 11 33 33 H 1.09004 * 109.47059 * 59.99488 * 14 12 11 34 34 H 0.97001 * 119.99839 * 179.97438 * 18 17 15 35 35 H 1.08003 * 126.95913 * 180.24540 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1817 0.0000 4 6 3.5812 1.1891 -0.0005 5 6 4.2921 0.0082 -0.0016 6 6 3.6162 -1.2063 -0.0012 7 8 4.0251 -2.4899 0.0045 8 6 2.9694 -3.3307 -0.0009 9 6 3.0563 -4.7962 -0.0008 10 8 2.0413 -5.4654 -0.0003 11 8 4.2621 -5.4001 -0.0013 12 6 4.2722 -6.8521 -0.0006 13 1 3.3850 -7.2213 0.5139 14 6 4.2749 -7.3627 -1.4429 15 6 5.5065 -7.3456 0.7093 16 1 6.2129 -6.6387 1.1186 17 6 5.7343 -8.6996 0.8352 18 7 4.8743 -9.5603 0.3363 19 14 7.2647 -9.3113 1.7146 20 1 8.0650 -8.1505 2.1810 21 1 6.8674 -10.1389 2.8818 22 1 8.0781 -10.1306 0.7806 23 6 1.8137 -2.6158 -0.0004 24 6 2.2085 -1.2079 -0.0005 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 1.6520 2.1163 0.0007 29 1 4.1101 2.1306 -0.0001 30 1 5.3719 0.0266 -0.0025 31 1 4.2828 -8.4526 -1.4424 32 1 3.3821 -7.0057 -1.9564 33 1 5.1620 -6.9934 -1.9575 34 1 5.0348 -10.5128 0.4246 35 1 0.8074 -3.0081 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122622708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:01 Heat of formation + Delta-G solvation = -64.299984 kcal Electronic energy + Delta-G solvation = -20114.669073 eV Core-core repulsion = 16851.166770 eV Total energy + Delta-G solvation = -3263.502303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.49785 -39.48178 -38.23653 -35.94145 -33.48161 -33.31416 -31.66894 -30.25896 -29.38567 -27.08381 -25.37717 -24.51755 -22.75400 -21.60462 -20.69603 -20.05490 -18.04981 -17.24002 -16.70745 -16.37986 -16.05064 -15.80499 -14.85343 -14.83273 -14.47938 -13.95267 -13.77362 -13.37792 -13.19020 -12.96246 -12.53374 -12.31681 -12.04313 -11.86878 -11.84061 -11.30026 -11.14354 -11.10237 -10.89013 -10.41439 -10.35188 -10.19816 -10.13121 -9.66071 -8.96707 -8.75825 -8.53656 -8.24589 -6.21847 -4.28721 0.48180 1.20362 1.79159 2.47141 3.23045 3.28421 3.30282 3.33847 3.46834 3.50070 4.29018 4.39116 4.63362 4.67099 4.92966 4.96762 5.11662 5.14081 5.23696 5.39731 5.45612 5.51510 5.60301 5.80653 6.01793 6.10716 6.20869 6.31862 6.47399 6.54234 6.81696 6.84034 6.99066 7.02008 7.50425 7.65100 7.82634 8.06668 8.43173 8.80723 9.36599 10.85810 Molecular weight = 274.10amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.003821 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.846070 B = 7326.308750 C = 7885.242222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.146 4.146 4 C -0.082 4.082 5 C -0.115 4.115 6 C 0.073 3.927 7 O -0.167 6.167 8 C 0.014 3.986 9 C 0.534 3.466 10 O -0.491 6.491 11 O -0.339 6.339 12 C 0.213 3.787 13 H 0.051 0.949 14 C -0.156 4.156 15 C -0.522 4.522 16 H 0.071 0.929 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.121 4.121 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.017 0.983 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 20.004 -1.297 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.027 4.027 3 C -0.164 4.164 4 C -0.100 4.100 5 C -0.133 4.133 6 C 0.024 3.976 7 O -0.067 6.067 8 C -0.034 4.034 9 C 0.377 3.623 10 O -0.382 6.382 11 O -0.254 6.254 12 C 0.162 3.838 13 H 0.069 0.931 14 C -0.214 4.214 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.740 3.260 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.140 4.140 24 C -0.144 4.144 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.121 0.879 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.729 19.444 -1.315 20.313 hybrid contribution 0.638 -0.531 0.380 0.913 sum -5.092 18.912 -0.934 19.608 Atomic orbital electron populations 1.20830 0.90597 1.03194 1.02798 1.19141 0.96137 0.90636 0.96780 1.20645 0.94177 0.97368 1.04209 1.20943 0.94000 0.96996 0.98085 1.19999 1.00502 0.87530 1.05315 1.19839 0.92731 0.84208 1.00806 1.84197 1.33757 1.13652 1.75099 1.21219 0.85411 0.89053 1.07759 1.19325 0.84081 0.84735 0.74170 1.90888 1.37027 1.63501 1.46735 1.86693 1.28784 1.29130 1.80818 1.20831 0.99558 0.68313 0.95146 0.93148 1.22190 0.97799 1.05146 0.96277 1.21057 1.06356 0.91993 1.36554 0.91062 1.24886 0.97453 0.96048 0.95533 1.69900 1.35619 1.02388 1.44765 0.86186 0.81845 0.78809 0.79125 1.19410 1.20690 1.20647 1.22662 0.98841 0.90096 1.02411 1.19731 0.93049 0.93364 1.08287 0.90617 0.91123 0.91076 0.85279 0.84638 0.84646 0.87937 0.96344 0.94190 0.92358 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.96 36.01 0.36 -0.60 16 2 C -0.03 -0.29 5.88 -104.66 -0.62 -0.91 16 3 C -0.15 -1.33 9.63 -39.95 -0.38 -1.72 16 4 C -0.08 -0.75 10.01 -39.52 -0.40 -1.14 16 5 C -0.12 -1.33 10.07 -39.45 -0.40 -1.73 16 6 C 0.07 1.10 7.41 -38.34 -0.28 0.81 16 7 O -0.17 -3.03 10.60 1.92 0.02 -3.01 16 8 C 0.01 0.26 7.10 -36.96 -0.26 0.00 16 9 C 0.53 11.90 7.91 34.19 0.27 12.17 16 10 O -0.49 -11.58 16.09 -19.32 -0.31 -11.90 16 11 O -0.34 -8.49 9.88 -42.77 -0.42 -8.91 16 12 C 0.21 5.81 2.57 -27.88 -0.07 5.74 16 13 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 14 C -0.16 -3.99 9.33 37.16 0.35 -3.65 16 15 C -0.52 -14.82 8.90 -34.44 -0.31 -15.13 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 19 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.12 -1.86 10.52 -37.22 -0.39 -2.25 16 24 C -0.14 -2.01 6.15 -105.20 -0.65 -2.66 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.44 8.08 -51.92 -0.42 0.02 16 27 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 28 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.17 2.28 8.06 -52.48 -0.42 1.85 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -31.12 311.46 -7.31 -38.43 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.02 Total: -1.50 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.87 Total: -9.40 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.63 Total: -24.55 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.71 Total: -23.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.12 -7.31 -38.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122622708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.871 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds