Wall clock time and date at job start Mon Mar 30 2020 20:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38180 * 126.45056 * 148.41351 * 3 2 1 5 5 N 1.34425 * 108.38597 * 179.97438 * 4 3 2 6 6 H 0.96999 * 125.40950 * 180.02562 * 5 4 3 7 7 C 1.37750 * 109.18877 * 359.97438 * 5 4 3 8 8 C 1.46790 * 125.85340 * 179.97438 * 7 5 4 9 9 O 1.21687 * 120.00183 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99734 * 0.02562 * 8 7 5 11 11 C 1.47019 * 125.65061 * 359.97268 * 10 8 7 12 12 C 1.54322 * 107.27223 * 181.07843 * 11 10 8 13 13 C 1.55154 * 102.94204 * 22.19795 * 12 11 10 14 14 H 1.08999 * 111.00353 * 82.56825 * 13 12 11 15 15 N 1.46500 * 111.00473 * 206.42028 * 13 12 11 16 16 C 1.36938 * 120.00171 * 198.64760 * 15 13 12 17 17 H 1.08003 * 119.99938 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99997 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99834 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00052 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47096 * 90.00524 * 20 18 16 22 22 H 1.48502 * 109.47334 * 210.00129 * 20 18 16 23 23 H 1.48495 * 109.47372 * 330.00579 * 20 18 16 24 24 C 1.47426 * 125.64729 * 179.97438 * 10 8 7 25 25 C 1.36412 * 108.29775 * 0.24219 * 7 5 4 26 26 H 1.08004 * 125.80730 * 0.03093 * 4 3 2 27 27 H 1.09001 * 109.88389 * 300.50344 * 11 10 8 28 28 H 1.09003 * 109.87977 * 61.66684 * 11 10 8 29 29 H 1.08999 * 110.71849 * 140.55494 * 12 11 10 30 30 H 1.08995 * 110.72403 * 263.65428 * 12 11 10 31 31 H 0.97003 * 119.99774 * 18.65208 * 15 13 12 32 32 H 0.97002 * 120.00131 * 179.97438 * 19 18 16 33 33 H 1.08998 * 110.36718 * 274.68923 * 24 10 8 34 34 H 1.09005 * 110.36600 * 37.01484 * 24 10 8 35 35 H 1.07997 * 126.47876 * 179.72341 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3885 0.9478 -0.5822 5 7 4.6666 0.5936 -0.3634 6 1 5.4459 1.0860 -0.6653 7 6 4.6942 -0.5791 0.3588 8 6 5.9009 -1.2907 0.7971 9 8 5.8011 -2.3236 1.4327 10 7 7.1194 -0.8001 0.4956 11 6 7.3837 0.4314 -0.2628 12 6 8.9155 0.5755 -0.3833 13 6 9.4186 -0.8774 -0.1755 14 1 9.3583 -1.4481 -1.1022 15 7 10.7828 -0.8894 0.3583 16 6 11.5472 -2.0213 0.2587 17 1 11.1441 -2.9053 -0.2130 18 6 12.8396 -2.0328 0.7649 19 7 13.5744 -3.1206 0.6687 20 14 13.5365 -0.5041 1.5814 21 1 13.2329 -0.5371 3.0347 22 1 15.0078 -0.4645 1.3840 23 1 12.9229 0.7045 0.9749 24 6 8.4081 -1.4095 0.8716 25 6 3.4079 -0.9689 0.5918 26 1 3.0590 1.8242 -1.1206 27 1 6.9389 0.3582 -1.2552 28 1 6.9713 1.2894 0.2682 29 1 9.1917 0.9414 -1.3721 30 1 9.3030 1.2354 0.3928 31 1 11.1447 -0.0956 0.7824 32 1 14.4777 -3.1285 1.0221 33 1 8.6987 -1.0944 1.8738 34 1 8.3437 -2.4963 0.8184 35 1 3.0915 -1.8512 1.1283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968341076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:49 Heat of formation + Delta-G solvation = 69.762518 kcal Electronic energy + Delta-G solvation = -19973.496271 eV Core-core repulsion = 16780.392856 eV Total energy + Delta-G solvation = -3193.103415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96956 -39.57939 -37.53542 -36.60366 -34.49752 -32.15770 -31.62119 -30.36809 -29.88428 -28.02043 -24.68498 -23.36586 -22.75023 -21.78926 -20.64111 -20.32984 -18.55215 -17.64579 -16.82121 -16.45307 -16.15623 -15.46273 -15.09276 -14.50737 -14.27101 -14.07254 -13.81150 -13.60110 -13.47304 -13.30150 -13.02452 -12.84693 -12.77663 -12.53262 -12.23784 -11.99700 -11.40112 -11.07933 -10.90572 -10.69603 -10.22653 -10.16199 -9.73031 -9.49270 -9.15851 -8.85240 -8.57565 -7.49453 -5.90753 -3.30383 1.10522 1.48359 2.42119 2.63027 2.87186 3.12201 3.25537 3.29269 3.36195 3.43021 3.88348 4.32747 4.42500 4.45804 4.50597 4.70262 4.77185 4.90500 5.08469 5.26084 5.33235 5.45898 5.56591 5.59602 5.67655 5.91063 6.03511 6.05086 6.15765 6.30457 6.40157 6.59717 6.76753 7.40449 7.42944 7.81980 8.04900 8.27100 9.02754 9.74326 9.90778 11.26644 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.047691 B = 0.003380 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.967258 B = 8283.241550 C = 8622.062385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.293 3.707 3 C -0.135 4.135 4 C 0.088 3.912 5 N -0.527 5.527 6 H 0.427 0.573 7 C -0.037 4.037 8 C 0.597 3.403 9 O -0.523 6.523 10 N -0.614 5.614 11 C 0.090 3.910 12 C -0.141 4.141 13 C 0.178 3.822 14 H 0.075 0.925 15 N -0.735 5.735 16 C -0.257 4.257 17 H 0.093 0.907 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.083 3.917 25 C -0.061 4.061 26 H 0.187 0.813 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.365 0.635 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 12.953 -4.211 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.022 4.022 3 C -0.146 4.146 4 C -0.056 4.056 5 N -0.126 5.126 6 H 0.271 0.729 7 C -0.148 4.148 8 C 0.385 3.615 9 O -0.398 6.398 10 N -0.348 5.348 11 C -0.034 4.034 12 C -0.180 4.180 13 C 0.066 3.934 14 H 0.093 0.907 15 N -0.376 5.376 16 C -0.387 4.387 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.573 5.573 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.041 4.041 25 C -0.088 4.088 26 H 0.204 0.796 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.198 0.802 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.528 12.140 -3.919 21.679 hybrid contribution 1.381 1.354 0.485 1.993 sum -16.147 13.494 -3.434 21.322 Atomic orbital electron populations 1.81273 1.11838 1.08367 1.10060 1.24651 0.91435 0.93299 0.92840 1.15397 0.85001 1.01186 1.13029 1.22293 0.82583 0.99825 1.00937 1.42549 1.08542 1.20167 1.41352 0.72853 1.20172 0.95522 0.91572 1.07583 1.16667 0.80631 0.84194 0.79988 1.90887 1.85536 1.23144 1.40279 1.48452 1.06259 1.25403 1.54721 1.22191 0.98734 0.87184 0.95250 1.22929 0.91855 0.99822 1.03395 1.21279 0.84639 0.92452 0.95032 0.90719 1.42627 1.10220 1.14003 1.70776 1.19059 0.94761 0.91154 1.33702 0.88896 1.24701 0.96570 0.96846 1.00471 1.69700 1.10060 1.26913 1.50588 0.86560 0.78686 0.83420 0.79846 1.20901 1.21565 1.20288 1.23435 0.80477 0.99687 1.00539 1.21052 0.89185 0.99047 0.99467 0.79566 0.91488 0.91675 0.89548 0.90224 0.80173 0.92794 0.91106 0.90070 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.50 18.54 41.84 0.78 -4.73 16 2 C 0.29 2.98 15.83 -22.48 -0.36 2.62 16 3 C -0.14 -1.13 5.97 -106.84 -0.64 -1.77 16 4 C 0.09 0.47 11.90 -16.44 -0.20 0.27 16 5 N -0.53 -3.29 5.54 -9.27 -0.05 -3.34 16 6 H 0.43 1.71 4.83 -40.82 -0.20 1.51 16 7 C -0.04 -0.38 6.83 -82.41 -0.56 -0.94 16 8 C 0.60 8.32 7.82 -12.80 -0.10 8.21 16 9 O -0.52 -9.40 17.11 5.20 0.09 -9.31 16 10 N -0.61 -7.93 3.33 -172.00 -0.57 -8.50 16 11 C 0.09 0.78 5.10 -3.07 -0.02 0.76 16 12 C -0.14 -1.54 6.57 -24.90 -0.16 -1.71 16 13 C 0.18 2.88 3.69 -65.77 -0.24 2.63 16 14 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 15 N -0.73 -15.39 5.08 -51.34 -0.26 -15.65 16 16 C -0.26 -6.73 10.47 -15.06 -0.16 -6.89 16 17 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 18 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 19 N -0.93 -27.89 13.97 55.49 0.78 -27.11 16 20 Si 0.89 20.63 27.73 -169.99 -4.71 15.92 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -5.90 6.52 56.52 0.37 -5.53 16 24 C 0.08 1.35 6.60 -2.52 -0.02 1.33 16 25 C -0.06 -0.60 10.54 -39.09 -0.41 -1.02 16 26 H 0.19 0.26 8.06 -52.48 -0.42 -0.16 16 27 H 0.07 0.42 7.07 -51.93 -0.37 0.05 16 28 H 0.07 0.40 7.22 -51.93 -0.37 0.02 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 31 H 0.36 7.42 5.58 -40.82 -0.23 7.19 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 35 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -33.92 306.48 -6.00 -39.92 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.70 Total: 4.46 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.96 Total: 3.73 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.67 Total: -59.33 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.71 Total: 15.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.92 -6.00 -39.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968341076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.682 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds