Wall clock time and date at job start Mon Mar 30 2020 20:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36349 * 125.84067 * 200.52196 * 3 2 1 5 5 C 1.41433 * 107.01196 * 179.97438 * 4 3 2 6 6 C 1.47375 * 126.46697 * 179.97438 * 5 4 3 7 7 O 1.21611 * 119.99878 * 5.72944 * 6 5 4 8 8 N 1.34779 * 119.99865 * 185.72970 * 6 5 4 9 9 C 1.47420 * 125.64433 * 174.72889 * 8 6 5 10 10 C 1.54912 * 104.83042 * 156.14087 * 9 8 6 11 11 C 1.55160 * 101.58170 * 37.00734 * 10 9 8 12 12 H 1.08998 * 110.72012 * 82.86219 * 11 10 9 13 13 N 1.46504 * 110.72320 * 206.13862 * 11 10 9 14 14 C 1.36929 * 120.00092 * 199.98071 * 13 11 10 15 15 H 1.08003 * 119.99881 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00238 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99996 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99845 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46846 * 90.00398 * 18 16 14 20 20 H 1.48498 * 109.46955 * 210.00457 * 18 16 14 21 21 H 1.48502 * 109.46969 * 330.00274 * 18 16 14 22 22 C 1.47019 * 125.64744 * 355.04161 * 8 6 5 23 23 C 1.38120 * 107.06357 * 0.23691 * 5 4 3 24 24 N 1.34433 * 108.38671 * 359.60271 * 23 5 4 25 25 H 0.97006 * 125.39064 * 180.15294 * 24 23 5 26 26 H 1.08003 * 126.49801 * 359.93911 * 4 3 2 27 27 H 1.09000 * 110.37234 * 274.97429 * 9 8 6 28 28 H 1.09002 * 110.37010 * 37.30460 * 9 8 6 29 29 H 1.09001 * 111.00554 * 278.93844 * 10 9 8 30 30 H 1.08998 * 111.03941 * 155.09786 * 10 9 8 31 31 H 0.96996 * 119.99775 * 19.97368 * 13 11 10 32 32 H 0.97001 * 119.99832 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.88117 * 300.21187 * 22 8 6 34 34 H 1.09001 * 109.88090 * 61.37221 * 22 8 6 35 35 H 1.08000 * 125.81211 * 179.76132 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3659 1.0362 0.3875 5 6 4.7048 0.6091 0.2280 6 6 5.9160 1.3955 0.5219 7 8 5.8187 2.4900 1.0430 8 7 7.1315 0.9017 0.2131 9 6 8.4109 1.6212 0.3493 10 6 9.4806 0.5076 0.4742 11 6 8.9279 -0.5659 -0.5002 12 1 9.2158 -0.3396 -1.5268 13 7 9.3876 -1.9023 -0.1140 14 6 9.3729 -2.9220 -1.0278 15 1 9.0220 -2.7412 -2.0331 16 6 9.8089 -4.1881 -0.6621 17 7 9.7943 -5.1683 -1.5403 18 14 10.4165 -4.5007 1.0765 19 1 9.2764 -4.9177 1.9317 20 1 11.4402 -5.5762 1.0572 21 1 11.0158 -3.2565 1.6225 22 6 7.4002 -0.4413 -0.3213 23 6 4.6628 -0.6821 -0.2607 24 7 3.3748 -1.0447 -0.3906 25 1 3.0631 -1.9051 -0.7124 26 1 3.0378 2.0002 0.7474 27 1 8.5995 2.2307 -0.5344 28 1 8.4035 2.2422 1.2451 29 1 9.5274 0.1233 1.4931 30 1 10.4575 0.8651 0.1485 31 1 9.7025 -2.0647 0.7889 32 1 10.0993 -6.0530 -1.2849 33 1 7.0461 -1.1969 0.3798 34 1 6.9030 -0.5636 -1.2836 35 1 5.5190 -1.2969 -0.4959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968447446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:52 Heat of formation + Delta-G solvation = 70.636663 kcal Electronic energy + Delta-G solvation = -20218.062548 eV Core-core repulsion = 17024.997039 eV Total energy + Delta-G solvation = -3193.065509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.70594 -39.48222 -37.30503 -36.68612 -34.26478 -32.05311 -31.50827 -30.73096 -29.28294 -27.89015 -24.63799 -23.18258 -22.68737 -21.34372 -20.51702 -20.20597 -18.59656 -17.75187 -16.74031 -16.21449 -15.56604 -15.28502 -15.01068 -14.62228 -14.39996 -14.02241 -13.72704 -13.29415 -13.22071 -13.17338 -12.86923 -12.85397 -12.65802 -12.40419 -12.10415 -11.87665 -11.26715 -10.99487 -10.84922 -10.58141 -10.19685 -9.87466 -9.75560 -9.37437 -9.14124 -8.59283 -8.40368 -7.51716 -5.95545 -3.34189 1.16091 1.71920 2.03528 2.93652 3.13523 3.14962 3.25449 3.28682 3.35380 3.57066 3.81489 4.42787 4.61134 4.80507 4.90859 4.99307 5.08574 5.09457 5.41955 5.42754 5.47146 5.61228 5.71280 5.81313 5.91014 5.97907 6.14920 6.23666 6.27216 6.41017 6.49310 6.63519 6.91733 7.18057 7.71647 7.79107 8.23183 8.38057 8.99907 9.72349 9.90322 11.21743 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.004825 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.514776 B = 5802.039430 C = 6990.075546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.284 3.716 3 C 0.035 3.965 4 C -0.048 4.048 5 C -0.224 4.224 6 C 0.603 3.397 7 O -0.553 6.553 8 N -0.612 5.612 9 C 0.112 3.888 10 C -0.145 4.145 11 C 0.177 3.823 12 H 0.076 0.924 13 N -0.738 5.738 14 C -0.257 4.257 15 H 0.093 0.907 16 C 0.012 3.988 17 N -0.928 5.928 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.275 1.275 22 C 0.065 3.935 23 C 0.083 3.917 24 N -0.519 5.519 25 H 0.428 0.572 26 H 0.159 0.841 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.365 0.635 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 9.589 2.537 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.032 4.032 3 C -0.076 4.076 4 C -0.077 4.077 5 C -0.233 4.233 6 C 0.393 3.607 7 O -0.433 6.433 8 N -0.345 5.345 9 C -0.011 4.011 10 C -0.184 4.184 11 C 0.065 3.935 12 H 0.094 0.906 13 N -0.380 5.380 14 C -0.387 4.387 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.574 5.574 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.201 1.201 22 C -0.061 4.061 23 C -0.060 4.060 24 N -0.113 5.113 25 H 0.266 0.734 26 H 0.177 0.823 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.198 0.802 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.103 9.873 2.559 13.671 hybrid contribution 0.743 -1.002 0.989 1.592 sum -8.360 8.871 3.548 12.696 Atomic orbital electron populations 1.81313 1.11277 1.06142 1.10084 1.24303 0.90817 0.94683 0.93376 1.15191 0.83254 0.91754 1.17396 1.21036 0.90306 0.97839 0.98496 1.19550 0.93694 0.95531 1.14572 1.16956 0.81224 0.84835 0.77693 1.90754 1.86384 1.21626 1.44494 1.48317 1.05648 1.16344 1.64212 1.22155 0.82124 0.94947 1.01843 1.23115 0.98197 0.96004 1.01038 1.21173 0.89389 0.85332 0.97599 0.90627 1.42747 1.77193 1.05882 1.12172 1.19062 1.37799 0.87678 0.94132 0.88916 1.24681 1.00722 0.95806 0.97291 1.69694 1.52417 1.01645 1.33662 0.86598 0.78840 0.77695 0.85661 1.20971 1.21622 1.20131 1.23499 1.01561 0.82724 0.98276 1.23673 0.86512 0.96802 0.98966 1.41712 1.05811 1.14272 1.49542 0.73367 0.82347 0.91402 0.90596 0.90761 0.89751 0.80152 0.92829 0.90498 0.91369 0.77917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.25 18.54 41.84 0.78 -4.47 16 2 C 0.28 3.07 15.88 -22.47 -0.36 2.71 16 3 C 0.04 0.35 6.90 -83.98 -0.58 -0.23 16 4 C -0.05 -0.54 10.59 -39.05 -0.41 -0.95 16 5 C -0.22 -2.75 6.10 -105.01 -0.64 -3.40 16 6 C 0.60 8.93 7.83 -12.54 -0.10 8.84 16 7 O -0.55 -9.82 17.16 5.27 0.09 -9.73 16 8 N -0.61 -8.36 3.33 -171.81 -0.57 -8.93 16 9 C 0.11 1.40 6.93 -2.53 -0.02 1.38 16 10 C -0.14 -1.86 6.69 -24.58 -0.16 -2.02 16 11 C 0.18 2.73 3.59 -66.09 -0.24 2.49 16 12 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 13 N -0.74 -14.69 4.98 -51.65 -0.26 -14.95 16 14 C -0.26 -6.29 10.46 -15.06 -0.16 -6.45 16 15 H 0.09 2.42 8.06 -52.48 -0.42 2.00 16 16 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 17 N -0.93 -26.69 13.97 55.49 0.78 -25.91 16 18 Si 0.88 20.06 27.74 -169.99 -4.71 15.34 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -5.87 6.52 56.52 0.37 -5.50 16 22 C 0.07 0.88 4.74 -3.07 -0.01 0.87 16 23 C 0.08 0.82 10.43 -16.46 -0.17 0.65 16 24 N -0.52 -4.32 6.02 -10.29 -0.06 -4.38 16 25 H 0.43 2.36 8.96 -40.82 -0.37 1.99 16 26 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.96 7.99 -51.93 -0.42 0.54 16 29 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.36 7.29 5.58 -40.82 -0.23 7.06 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 1.08 6.90 -51.93 -0.36 0.72 16 34 H 0.07 0.85 6.86 -51.93 -0.36 0.49 16 35 H 0.20 1.93 4.41 -52.49 -0.23 1.70 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -31.44 305.66 -5.96 -37.39 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.65 Total: 6.92 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -2.95 Total: 4.12 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.66 Total: -58.65 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.71 Total: 15.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.44 -5.96 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968447446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.030 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds