Wall clock time and date at job start Mon Mar 30 2020 20:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36349 * 125.84067 * 200.52196 * 3 2 1 5 5 C 1.41433 * 107.01196 * 179.97438 * 4 3 2 6 6 C 1.47375 * 126.46697 * 179.97438 * 5 4 3 7 7 O 1.21611 * 119.99878 * 5.72944 * 6 5 4 8 8 N 1.34779 * 119.99865 * 185.72970 * 6 5 4 9 9 C 1.47420 * 125.64433 * 174.72889 * 8 6 5 10 10 C 1.54912 * 104.83042 * 156.14087 * 9 8 6 11 11 C 1.55160 * 101.58170 * 37.00734 * 10 9 8 12 12 H 1.08998 * 110.72012 * 82.86219 * 11 10 9 13 13 N 1.46504 * 110.72320 * 206.13862 * 11 10 9 14 14 C 1.36929 * 120.00092 * 199.98071 * 13 11 10 15 15 H 1.08003 * 119.99881 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00238 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99996 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99845 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46846 * 90.00398 * 18 16 14 20 20 H 1.48498 * 109.46955 * 210.00457 * 18 16 14 21 21 H 1.48502 * 109.46969 * 330.00274 * 18 16 14 22 22 C 1.47019 * 125.64744 * 355.04161 * 8 6 5 23 23 C 1.38120 * 107.06357 * 0.23691 * 5 4 3 24 24 N 1.34433 * 108.38671 * 359.60271 * 23 5 4 25 25 H 0.97006 * 125.39064 * 180.15294 * 24 23 5 26 26 H 1.08003 * 126.49801 * 359.93911 * 4 3 2 27 27 H 1.09000 * 110.37234 * 274.97429 * 9 8 6 28 28 H 1.09002 * 110.37010 * 37.30460 * 9 8 6 29 29 H 1.09001 * 111.00554 * 278.93844 * 10 9 8 30 30 H 1.08998 * 111.03941 * 155.09786 * 10 9 8 31 31 H 0.96996 * 119.99775 * 19.97368 * 13 11 10 32 32 H 0.97001 * 119.99832 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.88117 * 300.21187 * 22 8 6 34 34 H 1.09001 * 109.88090 * 61.37221 * 22 8 6 35 35 H 1.08000 * 125.81211 * 179.76132 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3659 1.0362 0.3875 5 6 4.7048 0.6091 0.2280 6 6 5.9160 1.3955 0.5219 7 8 5.8187 2.4900 1.0430 8 7 7.1315 0.9017 0.2131 9 6 8.4109 1.6212 0.3493 10 6 9.4806 0.5076 0.4742 11 6 8.9279 -0.5659 -0.5002 12 1 9.2158 -0.3396 -1.5268 13 7 9.3876 -1.9023 -0.1140 14 6 9.3729 -2.9220 -1.0278 15 1 9.0220 -2.7412 -2.0331 16 6 9.8089 -4.1881 -0.6621 17 7 9.7943 -5.1683 -1.5403 18 14 10.4165 -4.5007 1.0765 19 1 9.2764 -4.9177 1.9317 20 1 11.4402 -5.5762 1.0572 21 1 11.0158 -3.2565 1.6225 22 6 7.4002 -0.4413 -0.3213 23 6 4.6628 -0.6821 -0.2607 24 7 3.3748 -1.0447 -0.3906 25 1 3.0631 -1.9051 -0.7124 26 1 3.0378 2.0002 0.7474 27 1 8.5995 2.2307 -0.5344 28 1 8.4035 2.2422 1.2451 29 1 9.5274 0.1233 1.4931 30 1 10.4575 0.8651 0.1485 31 1 9.7025 -2.0647 0.7889 32 1 10.0993 -6.0530 -1.2849 33 1 7.0461 -1.1969 0.3798 34 1 6.9030 -0.5636 -1.2836 35 1 5.5190 -1.2969 -0.4959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968447446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:51 Heat of formation + Delta-G solvation = 49.073432 kcal Electronic energy + Delta-G solvation = -20218.997600 eV Core-core repulsion = 17024.997039 eV Total energy + Delta-G solvation = -3194.000561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.57285 -40.59316 -38.54410 -37.62429 -35.86149 -33.50786 -32.67585 -31.80435 -30.37259 -29.13051 -25.96335 -24.58931 -23.63554 -22.37960 -21.77635 -21.09041 -19.73233 -19.45038 -17.77713 -17.39412 -16.50997 -16.40329 -16.28630 -15.89382 -15.52686 -15.23509 -14.96052 -14.68125 -14.27440 -14.20207 -14.09416 -13.89163 -13.78292 -13.55731 -13.38904 -12.99610 -12.90797 -12.33096 -12.21907 -12.10637 -11.74179 -11.50551 -11.08346 -10.89605 -10.25279 -9.55524 -9.41858 -9.29428 -7.95052 -5.29397 0.32205 0.75191 1.18314 1.47225 1.47902 1.55483 2.07853 2.10136 2.24590 2.54725 2.55473 2.98794 3.36144 3.49964 3.77917 3.90308 3.93397 4.09469 4.19433 4.37490 4.46625 4.51637 4.60906 4.83512 4.90264 4.93066 5.08291 5.20071 5.28931 5.40911 5.51852 5.56024 5.87025 6.18904 6.28663 6.35339 6.61695 7.14622 7.26827 7.90040 8.07512 9.25413 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.004825 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.514776 B = 5802.039430 C = 6990.075546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.305 3.695 3 C 0.043 3.957 4 C -0.053 4.053 5 C -0.248 4.248 6 C 0.600 3.400 7 O -0.589 6.589 8 N -0.611 5.611 9 C 0.111 3.889 10 C -0.133 4.133 11 C 0.167 3.833 12 H 0.074 0.926 13 N -0.740 5.740 14 C -0.225 4.225 15 H 0.070 0.930 16 C -0.056 4.056 17 N -0.981 5.981 18 Si 0.942 3.058 19 H -0.280 1.280 20 H -0.306 1.306 21 H -0.250 1.250 22 C 0.074 3.926 23 C 0.102 3.898 24 N -0.503 5.503 25 H 0.443 0.557 26 H 0.161 0.839 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.367 0.633 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 10.319 3.302 12.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.009 4.009 3 C -0.068 4.068 4 C -0.081 4.081 5 C -0.257 4.257 6 C 0.392 3.608 7 O -0.472 6.472 8 N -0.343 5.343 9 C -0.011 4.011 10 C -0.171 4.171 11 C 0.057 3.943 12 H 0.092 0.908 13 N -0.383 5.383 14 C -0.356 4.356 15 H 0.088 0.912 16 C -0.248 4.248 17 N -0.631 5.631 18 Si 0.771 3.229 19 H -0.207 1.207 20 H -0.234 1.234 21 H -0.175 1.175 22 C -0.051 4.051 23 C -0.042 4.042 24 N -0.098 5.098 25 H 0.285 0.715 26 H 0.179 0.821 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.201 0.799 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.149 10.650 3.333 14.430 hybrid contribution 0.731 -1.133 0.679 1.510 sum -8.417 9.517 4.012 13.324 Atomic orbital electron populations 1.81343 1.12221 1.07261 1.11248 1.24235 0.90668 0.93640 0.92391 1.14978 0.82711 0.91872 1.17278 1.21119 0.90151 0.98353 0.98525 1.19445 0.93179 0.96489 1.16635 1.17267 0.81944 0.84564 0.77069 1.90731 1.86880 1.23236 1.46309 1.48330 1.05892 1.16307 1.63777 1.22245 0.81420 0.94895 1.02544 1.23045 0.99001 0.94859 1.00207 1.21372 0.90665 0.83895 0.98326 0.90765 1.42723 1.77539 1.06556 1.11470 1.19054 1.34453 0.88368 0.93752 0.91188 1.25356 1.02527 0.95958 1.00910 1.69858 1.55319 1.02030 1.35908 0.85604 0.77968 0.77883 0.81470 1.20667 1.23357 1.17479 1.23275 1.00009 0.82762 0.99047 1.23625 0.87135 0.95860 0.97583 1.41675 1.05066 1.14601 1.48410 0.71484 0.82138 0.90059 0.90621 0.90757 0.88084 0.79887 0.93568 0.90508 0.89991 0.77172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.82 18.54 19.00 0.35 -10.47 16 2 C 0.31 6.13 15.88 88.33 1.40 7.53 16 3 C 0.04 0.77 6.90 39.03 0.27 1.04 16 4 C -0.05 -1.10 10.59 22.62 0.24 -0.86 16 5 C -0.25 -5.66 6.10 -20.11 -0.12 -5.79 16 6 C 0.60 16.91 7.83 86.65 0.68 17.59 16 7 O -0.59 -20.47 17.16 -4.06 -0.07 -20.54 16 8 N -0.61 -15.38 3.33 -815.73 -2.71 -18.10 16 9 C 0.11 2.51 6.93 86.86 0.60 3.11 16 10 C -0.13 -3.01 6.69 31.99 0.21 -2.79 16 11 C 0.17 4.75 3.59 46.18 0.17 4.92 16 12 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 13 N -0.74 -27.79 4.98 -317.32 -1.58 -29.37 16 14 C -0.23 -10.80 10.46 84.03 0.88 -9.92 16 15 H 0.07 3.64 8.06 -2.91 -0.02 3.62 16 16 C -0.06 -2.91 5.50 84.86 0.47 -2.44 16 17 N -0.98 -57.34 13.97 21.65 0.30 -57.03 16 18 Si 0.94 40.76 27.74 68.60 1.90 42.66 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.31 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.25 -9.63 6.52 99.48 0.65 -8.98 16 22 C 0.07 1.83 4.74 86.73 0.41 2.24 16 23 C 0.10 1.78 10.43 84.27 0.88 2.66 16 24 N -0.50 -7.04 6.02 -186.48 -1.12 -8.17 16 25 H 0.44 3.59 8.96 -92.70 -0.83 2.76 16 26 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.76 7.99 -2.39 -0.02 1.74 16 29 H 0.07 1.73 8.00 -2.39 -0.02 1.71 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.37 13.57 5.58 -92.71 -0.52 13.05 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.08 1.94 6.90 -2.39 -0.02 1.93 16 34 H 0.08 1.82 6.86 -2.39 -0.02 1.80 16 35 H 0.21 3.41 4.41 -2.91 -0.01 3.40 16 Total: -1.00 -67.47 305.66 2.91 -64.56 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.25 Total: 19.17 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.09 Total: 17.28 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -4.76 Total: -123.14 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.07 Total: -20.54 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.90 Total: 42.66 kcal Total: -67.47 2.91 -64.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968447446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.634 kcal (2) G-P(sol) polarization free energy of solvation -67.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds