Wall clock time and date at job start Mon Mar 30 2020 20:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.38078 * 125.89107 * 163.09935 * 3 2 1 5 5 C 1.39355 * 107.51188 * 179.97438 * 4 3 2 6 6 C 1.37999 * 107.48777 * 0.02562 * 5 4 3 7 7 C 1.47062 * 125.92326 * 179.97438 * 6 5 4 8 8 O 1.21643 * 119.99651 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00216 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00006 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.77560 * 31.76682 * 10 9 7 12 12 C 1.55156 * 110.71740 * 155.00107 * 10 9 7 13 13 C 1.54906 * 101.61451 * 153.84824 * 12 10 9 14 14 N 1.47471 * 104.81210 * 323.04512 * 13 12 10 15 15 C 1.36936 * 125.62644 * 204.04433 * 14 13 12 16 16 H 1.08001 * 119.99967 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00461 * 0.03195 * 15 14 13 18 18 N 1.31616 * 119.99418 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00126 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47218 * 59.99220 * 19 17 15 21 21 H 1.48504 * 109.46785 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46751 * 299.99456 * 19 17 15 23 23 C 1.47017 * 108.71970 * 24.07007 * 14 13 12 24 24 N 1.36713 * 125.89529 * 343.38708 * 3 2 1 25 25 H 0.97004 * 125.68998 * 359.97438 * 24 3 2 26 26 H 1.07994 * 126.24741 * 359.97438 * 4 3 2 27 27 H 1.08007 * 126.26067 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99676 * 0.02562 * 9 7 6 29 29 H 1.09002 * 111.00677 * 271.94408 * 12 10 9 30 30 H 1.09002 * 111.00564 * 35.75667 * 12 10 9 31 31 H 1.09008 * 110.36753 * 81.85112 * 13 12 10 32 32 H 1.09001 * 110.37094 * 204.16995 * 13 12 10 33 33 H 0.97005 * 119.99622 * 180.02562 * 18 17 15 34 34 H 1.08998 * 109.88206 * 239.55467 * 23 14 13 35 35 H 1.09007 * 109.88177 * 118.39340 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3770 1.0713 -0.3252 5 6 4.6997 0.6517 -0.1969 6 6 4.6788 -0.6687 0.2040 7 6 5.8565 -1.5113 0.4601 8 8 6.9745 -1.0523 0.3215 9 7 5.6972 -2.7921 0.8484 10 6 6.8705 -3.6316 1.1030 11 1 7.6990 -3.0334 1.4823 12 6 6.5224 -4.7763 2.0909 13 6 7.5649 -5.8533 1.7002 14 7 7.6870 -5.7456 0.2345 15 6 8.1056 -6.7420 -0.6064 16 1 8.1614 -6.5631 -1.6700 17 6 8.4581 -7.9822 -0.0919 18 7 8.3904 -8.2001 1.2044 19 14 9.0284 -9.3416 -1.2391 20 1 10.2434 -8.8970 -1.9680 21 1 9.3438 -10.5576 -0.4473 22 1 7.9517 -9.6506 -2.2141 23 6 7.2856 -4.3917 -0.1742 24 7 3.3701 -1.0603 0.3166 25 1 3.0640 -1.9423 0.5801 26 1 3.0454 2.0545 -0.6244 27 1 5.5803 1.2500 -0.3788 28 1 4.8057 -3.1581 0.9586 29 1 6.6596 -4.4562 3.1238 30 1 5.5071 -5.1379 1.9278 31 1 8.5229 -5.6446 2.1767 32 1 7.2092 -6.8449 1.9801 33 1 8.6371 -9.0666 1.5640 34 1 6.4427 -4.4470 -0.8631 35 1 8.1243 -3.8845 -0.6513 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010648915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:00:56 Heat of formation + Delta-G solvation = 48.800021 kcal Electronic energy + Delta-G solvation = -19898.213799 eV Core-core repulsion = 16704.201382 eV Total energy + Delta-G solvation = -3194.012417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.48525 -40.56686 -38.81623 -37.60875 -35.73025 -33.86321 -32.27690 -31.34197 -30.69533 -28.79854 -26.60419 -24.89929 -22.57320 -22.24142 -21.65749 -21.30381 -20.62520 -19.02614 -18.45732 -17.42418 -16.67988 -16.45731 -16.03187 -15.78012 -15.51892 -15.35098 -14.86623 -14.55936 -14.31564 -14.22137 -13.99471 -13.79008 -13.64197 -13.46262 -13.27940 -13.03371 -12.70709 -12.56485 -12.23884 -12.06598 -11.83699 -11.42701 -11.26934 -10.75544 -10.26786 -10.15773 -9.38846 -8.91632 -7.79238 -5.23965 -0.10266 1.12747 1.13438 1.47367 1.50117 1.56495 1.90922 2.04484 2.26471 2.37027 2.50028 2.91055 3.31222 3.60004 3.74672 3.85605 4.02778 4.13792 4.23622 4.27763 4.58112 4.72542 4.84693 4.90550 4.97357 5.03300 5.14687 5.39699 5.44482 5.50160 5.60367 5.71554 5.78116 6.06422 6.29548 6.30413 6.46348 7.05996 7.09836 7.75462 8.37745 9.22152 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.003417 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.439577 B = 8192.301284 C = 8463.864804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.301 3.699 3 C 0.091 3.909 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.008 4.008 7 C 0.586 3.414 8 O -0.559 6.559 9 N -0.701 5.701 10 C 0.149 3.851 11 H 0.089 0.911 12 C -0.128 4.128 13 C 0.151 3.849 14 N -0.624 5.624 15 C -0.244 4.244 16 H 0.077 0.923 17 C -0.062 4.062 18 N -0.946 5.946 19 Si 0.980 3.020 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.126 3.874 24 N -0.504 5.504 25 H 0.434 0.566 26 H 0.186 0.814 27 H 0.166 0.834 28 H 0.411 0.589 29 H 0.094 0.906 30 H 0.083 0.917 31 H -0.010 1.010 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.031 0.969 35 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 16.267 0.582 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.014 4.014 3 C -0.027 4.027 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.127 4.127 7 C 0.374 3.626 8 O -0.437 6.437 9 N -0.352 5.352 10 C 0.044 3.956 11 H 0.107 0.893 12 C -0.167 4.167 13 C 0.026 3.974 14 N -0.351 5.351 15 C -0.373 4.373 16 H 0.095 0.905 17 C -0.255 4.255 18 N -0.595 5.595 19 Si 0.808 3.192 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.000 4.000 24 N -0.102 5.102 25 H 0.275 0.725 26 H 0.203 0.797 27 H 0.183 0.817 28 H 0.247 0.753 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.008 0.992 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -12.324 16.176 0.552 20.344 hybrid contribution 0.586 -1.633 -0.375 1.775 sum -11.739 14.543 0.177 18.691 Atomic orbital electron populations 1.81381 1.12363 1.06936 1.10657 1.24277 0.90680 0.93787 0.92638 1.15558 0.82513 0.90548 1.14117 1.21576 0.90473 0.98930 1.02913 1.21505 0.98696 0.92299 1.01754 1.20328 0.82019 0.96700 1.13614 1.17425 0.87584 0.81249 0.76380 1.90858 1.25656 1.73859 1.53340 1.45732 1.10016 1.10811 1.68667 1.21721 0.88372 0.90759 0.94764 0.89280 1.23137 1.00414 0.94254 0.98850 1.21791 0.94055 0.98850 0.82701 1.44724 1.78003 1.08510 1.03822 1.19385 1.36887 0.90960 0.90080 0.90541 1.25592 1.02269 0.99929 0.97671 1.69996 1.55109 1.22975 1.11445 0.85136 0.78226 0.78212 0.77641 1.20776 1.21706 1.20169 1.21713 0.96756 0.85584 0.95985 1.41803 1.04358 1.12790 1.51251 0.72492 0.79718 0.81667 0.75252 0.88717 0.89795 0.99204 0.90073 0.94131 0.95067 0.97092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.84 18.54 19.01 0.35 -8.48 16 2 C 0.30 4.56 15.89 88.33 1.40 5.96 16 3 C 0.09 1.11 6.93 39.59 0.27 1.38 16 4 C -0.11 -1.19 10.80 22.50 0.24 -0.95 16 5 C -0.12 -1.74 10.60 22.48 0.24 -1.51 16 6 C -0.01 -0.14 7.04 40.58 0.29 0.14 16 7 C 0.59 14.51 7.80 86.56 0.68 15.18 16 8 O -0.56 -18.65 16.52 -4.17 -0.07 -18.72 16 9 N -0.70 -16.28 5.10 -440.53 -2.25 -18.53 16 10 C 0.15 4.80 3.32 46.18 0.15 4.96 16 11 H 0.09 3.10 7.55 -2.38 -0.02 3.08 16 12 C -0.13 -4.09 6.71 31.98 0.21 -3.87 16 13 C 0.15 7.05 5.89 86.85 0.51 7.57 16 14 N -0.62 -31.60 3.40 -691.88 -2.35 -33.95 16 15 C -0.24 -13.62 10.27 84.03 0.86 -12.76 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 17 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 18 N -0.95 -54.83 10.09 21.65 0.22 -54.62 16 19 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.13 5.22 6.99 86.73 0.61 5.82 16 24 N -0.50 -6.01 6.02 -175.93 -1.06 -7.07 16 25 H 0.43 3.15 8.15 -92.71 -0.76 2.39 16 26 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 27 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.41 6.61 7.66 -92.71 -0.71 5.90 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 30 H 0.08 2.38 8.01 -2.39 -0.02 2.36 16 31 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 32 H 0.08 4.29 5.88 -2.39 -0.01 4.28 16 33 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 34 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 35 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 Total: -1.00 -71.61 310.22 2.50 -69.11 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -0.31 Total: 6.28 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 5.93 Total: 18.95 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -5.08 Total: -122.64 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.07 Total: -18.72 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -71.61 2.50 -69.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010648915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.910 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds