Wall clock time and date at job start Mon Mar 30 2020 20:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.38186 * 126.45521 * 342.70437 * 3 2 1 5 5 N 1.34424 * 108.38331 * 180.02562 * 4 3 2 6 6 H 0.96996 * 125.40682 * 180.02562 * 5 4 3 7 7 C 1.37749 * 109.19111 * 359.97438 * 5 4 3 8 8 C 1.46791 * 125.85278 * 179.97438 * 7 5 4 9 9 O 1.21680 * 120.00191 * 180.02562 * 8 7 5 10 10 N 1.34777 * 120.00042 * 0.02562 * 8 7 5 11 11 C 1.47022 * 125.64528 * 0.03032 * 10 8 7 12 12 C 1.54327 * 107.27336 * 178.90269 * 11 10 8 13 13 C 1.55165 * 102.94078 * 337.80587 * 12 11 10 14 14 H 1.09001 * 111.00003 * 277.43047 * 13 12 11 15 15 N 1.46496 * 111.00397 * 153.57581 * 13 12 11 16 16 C 1.36935 * 120.00087 * 155.00449 * 15 13 12 17 17 H 1.08005 * 119.99923 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00226 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99905 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00010 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47208 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47531 * 119.99749 * 20 18 16 23 23 H 1.48501 * 109.46923 * 239.99683 * 20 18 16 24 24 C 1.47425 * 125.65136 * 179.97438 * 10 8 7 25 25 C 1.36408 * 108.30118 * 0.24268 * 7 5 4 26 26 H 1.08000 * 125.80510 * 359.96079 * 4 3 2 27 27 H 1.08997 * 109.88723 * 59.48678 * 11 10 8 28 28 H 1.09000 * 110.01436 * 298.39230 * 11 10 8 29 29 H 1.08993 * 110.72079 * 96.16743 * 12 11 10 30 30 H 1.09002 * 110.72173 * 219.44580 * 12 11 10 31 31 H 0.97002 * 120.00223 * 334.99627 * 15 13 12 32 32 H 0.97000 * 119.99990 * 180.02562 * 19 18 16 33 33 H 1.08997 * 110.36855 * 323.00479 * 24 10 8 34 34 H 1.08999 * 110.36490 * 85.21794 * 24 10 8 35 35 H 1.08004 * 126.48509 * 179.71503 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3895 -1.0602 0.3304 5 7 4.6673 -0.6613 0.2070 6 1 5.4470 -1.2122 0.3784 7 6 4.6936 0.6536 -0.2026 8 6 5.8996 1.4530 -0.4503 9 8 5.7987 2.6108 -0.8107 10 7 7.1187 0.9045 -0.2786 11 6 7.3842 -0.4764 0.1506 12 6 8.9161 -0.6606 0.1800 13 6 9.4183 0.4518 -0.7781 14 1 9.3583 0.1287 -1.8174 15 7 10.7821 0.8631 -0.4361 16 6 11.5908 1.4158 -1.3929 17 1 11.2234 1.5481 -2.3999 18 6 12.8833 1.8050 -1.0690 19 7 13.3313 1.6433 0.1580 20 14 13.9867 2.5583 -2.3745 21 1 13.2516 2.6301 -3.6628 22 1 14.3869 3.9257 -1.9557 23 1 15.1992 1.7176 -2.5431 24 6 8.4067 1.5894 -0.4912 25 6 3.4069 1.0875 -0.3329 26 1 3.0609 -2.0423 0.6368 27 1 6.9402 -1.1765 -0.5570 28 1 6.9716 -0.6436 1.1456 29 1 9.3038 -0.5063 1.1869 30 1 9.1933 -1.6461 -0.1944 31 1 11.1122 0.7440 0.4682 32 1 14.2343 1.9157 0.3844 33 1 8.3416 2.2634 -1.3453 34 1 8.6961 2.1396 0.4042 35 1 3.0896 2.0747 -0.6347 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018681836.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:03 Heat of formation + Delta-G solvation = 64.608690 kcal Electronic energy + Delta-G solvation = -19914.413886 eV Core-core repulsion = 16721.086985 eV Total energy + Delta-G solvation = -3193.326901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.92957 -39.49981 -37.43265 -36.57907 -34.35490 -32.12712 -31.52548 -30.08822 -29.77003 -27.70949 -24.62822 -23.41712 -22.95018 -21.69431 -20.59307 -20.24532 -18.39301 -17.40012 -16.76652 -16.27014 -16.12738 -15.39313 -15.04330 -14.49970 -14.19288 -14.03686 -13.67913 -13.58446 -13.34633 -13.22945 -13.06028 -12.90440 -12.63177 -12.37534 -12.17678 -11.71370 -11.27246 -10.94938 -10.86061 -10.47827 -10.16485 -10.10261 -9.86207 -9.45995 -9.13149 -8.81129 -8.51641 -7.19438 -5.93239 -3.24770 1.14316 1.51292 2.45428 2.66310 2.93962 3.16232 3.35618 3.42566 3.44012 3.45722 3.91638 4.37952 4.44510 4.53443 4.59473 4.82711 4.83939 5.01538 5.16150 5.34145 5.48441 5.57131 5.61143 5.73175 5.93492 6.06452 6.08055 6.17029 6.22877 6.36895 6.47523 6.70654 6.80963 7.42839 7.49589 7.57768 8.09584 8.23934 9.36383 9.87455 10.21974 11.28590 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.048617 B = 0.003227 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.794784 B = 8674.905199 C = 9048.323759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.293 3.707 3 C -0.136 4.136 4 C 0.088 3.912 5 N -0.526 5.526 6 H 0.427 0.573 7 C -0.036 4.036 8 C 0.596 3.404 9 O -0.526 6.526 10 N -0.613 5.613 11 C 0.090 3.910 12 C -0.140 4.140 13 C 0.173 3.827 14 H 0.070 0.930 15 N -0.710 5.710 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.007 4.007 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.081 3.919 25 C -0.062 4.062 26 H 0.187 0.813 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.387 0.613 32 H 0.257 0.743 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 -9.387 2.169 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.022 4.022 3 C -0.147 4.147 4 C -0.057 4.057 5 N -0.126 5.126 6 H 0.272 0.728 7 C -0.148 4.148 8 C 0.384 3.616 9 O -0.402 6.402 10 N -0.346 5.346 11 C -0.034 4.034 12 C -0.179 4.179 13 C 0.060 3.940 14 H 0.088 0.912 15 N -0.349 5.349 16 C -0.382 4.382 17 H 0.092 0.908 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.740 3.260 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.044 4.044 25 C -0.089 4.089 26 H 0.204 0.796 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.222 0.778 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.691 -8.689 1.822 18.906 hybrid contribution 1.500 0.074 -0.158 1.510 sum -15.191 -8.616 1.663 17.543 Atomic orbital electron populations 1.81272 1.11841 1.07716 1.10805 1.24656 0.91439 0.93454 0.92621 1.15399 0.84984 0.96379 1.17928 1.22294 0.82600 0.99329 1.01437 1.42564 1.08563 1.11336 1.50090 0.72794 1.20187 0.95542 0.84988 1.14066 1.16679 0.80681 0.85970 0.78246 1.90873 1.85582 1.16190 1.47552 1.48467 1.06220 1.13339 1.66620 1.22202 0.99133 0.83715 0.98350 1.22953 0.91318 1.01261 1.02350 1.21311 0.85600 0.90205 0.96886 0.91216 1.42303 1.07659 1.73133 1.11816 1.19304 0.93712 1.33462 0.91737 0.90781 1.24785 0.97527 1.01442 0.96639 1.69663 1.17583 1.52708 1.17648 0.86092 0.80574 0.78656 0.80685 1.20364 1.21658 1.21727 1.23534 0.80623 0.98168 1.02028 1.21044 0.89204 0.98911 0.99698 0.79573 0.91732 0.91776 0.90036 0.89807 0.77803 0.93296 0.90575 0.91100 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.60 18.54 41.84 0.78 -4.82 16 2 C 0.29 3.05 15.83 -22.48 -0.36 2.70 16 3 C -0.14 -1.18 5.97 -106.84 -0.64 -1.81 16 4 C 0.09 0.50 11.90 -16.44 -0.20 0.30 16 5 N -0.53 -3.53 5.54 -9.27 -0.05 -3.58 16 6 H 0.43 1.95 4.83 -40.82 -0.20 1.76 16 7 C -0.04 -0.38 6.83 -82.41 -0.56 -0.95 16 8 C 0.60 8.56 7.82 -12.80 -0.10 8.46 16 9 O -0.53 -9.62 17.11 5.21 0.09 -9.53 16 10 N -0.61 -8.28 3.33 -172.02 -0.57 -8.85 16 11 C 0.09 0.85 5.10 -3.06 -0.02 0.83 16 12 C -0.14 -1.70 6.60 -24.89 -0.16 -1.86 16 13 C 0.17 2.94 3.71 -65.78 -0.24 2.70 16 14 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 15 N -0.71 -15.95 5.24 -51.35 -0.27 -16.22 16 16 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.93 -26.48 13.06 55.49 0.72 -25.75 16 20 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.08 1.37 6.60 -2.53 -0.02 1.35 16 25 C -0.06 -0.63 10.54 -39.09 -0.41 -1.05 16 26 H 0.19 0.33 8.06 -52.49 -0.42 -0.09 16 27 H 0.06 0.45 7.07 -51.93 -0.37 0.08 16 28 H 0.06 0.45 7.22 -51.93 -0.37 0.08 16 29 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.39 9.23 7.76 -40.82 -0.32 8.91 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.16 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -32.61 309.61 -6.36 -38.97 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.75 Total: 4.98 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -2.95 Total: 3.76 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.61 Total: -59.22 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.61 -6.36 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018681836.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.578 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds