Wall clock time and date at job start Mon Mar 30 2020 20:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36355 * 125.84248 * 116.44040 * 3 2 1 5 5 C 1.41427 * 107.01062 * 179.76548 * 4 3 2 6 6 C 1.47378 * 126.46545 * 180.24721 * 5 4 3 7 7 O 1.21605 * 120.00150 * 0.18343 * 6 5 4 8 8 N 1.34775 * 119.99745 * 180.18550 * 6 5 4 9 9 C 1.47020 * 125.64895 * 359.69481 * 8 6 5 10 10 C 1.54334 * 107.26695 * 178.84900 * 9 8 6 11 11 C 1.55154 * 103.02088 * 338.13656 * 10 9 8 12 12 H 1.09000 * 111.00489 * 277.23394 * 11 10 9 13 13 N 1.46499 * 111.00842 * 153.38322 * 11 10 9 14 14 C 1.36932 * 120.00346 * 161.35054 * 13 11 10 15 15 H 1.07999 * 120.00099 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99907 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00473 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99747 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47135 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47136 * 120.00370 * 18 16 14 21 21 H 1.48497 * 109.47521 * 240.00228 * 18 16 14 22 22 C 1.47425 * 125.64686 * 179.97438 * 8 6 5 23 23 C 1.38122 * 107.06625 * 0.38244 * 5 4 3 24 24 N 1.34427 * 108.38658 * 359.61747 * 23 5 4 25 25 H 0.97005 * 125.39326 * 180.28516 * 24 23 5 26 26 H 1.08006 * 126.49371 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.88322 * 298.38774 * 9 8 6 28 28 H 1.08996 * 109.88768 * 59.55414 * 9 8 6 29 29 H 1.09004 * 110.85134 * 219.66983 * 10 9 8 30 30 H 1.08997 * 110.51975 * 96.44667 * 10 9 8 31 31 H 0.97005 * 119.99651 * 341.34424 * 13 11 10 32 32 H 0.96991 * 119.99971 * 179.97438 * 17 16 14 33 33 H 1.08991 * 110.36944 * 322.92938 * 22 8 6 34 34 H 1.08997 * 110.36733 * 85.15004 * 22 8 6 35 35 H 1.08002 * 125.81033 * 179.88601 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3663 0.4932 -0.9897 5 6 4.7049 0.2955 -0.5785 6 6 5.9164 0.6760 -1.3266 7 8 5.8164 1.2200 -2.4096 8 7 7.1350 0.4210 -0.8105 9 6 7.3994 -0.2222 0.4849 10 6 8.9313 -0.3299 0.6386 11 6 9.4363 -0.2471 -0.8261 12 1 9.3798 -1.2199 -1.3144 13 7 10.7989 0.2880 -0.8823 14 6 11.5654 0.0931 -2.0001 15 1 11.1653 -0.4546 -2.8405 16 6 12.8564 0.6006 -2.0536 17 7 13.3439 1.2686 -1.0296 18 14 13.9023 0.3341 -3.5782 19 1 13.1283 -0.4422 -4.5800 20 1 14.2795 1.6492 -4.1558 21 1 15.1303 -0.4159 -3.2113 22 6 8.4235 0.7459 -1.4487 23 6 4.6627 -0.3243 0.6551 24 7 3.3747 -0.4962 0.9994 25 1 3.0627 -0.9048 1.8221 26 1 3.0384 0.9516 -1.9110 27 1 6.9858 0.3839 1.2910 28 1 6.9560 -1.2177 0.5019 29 1 9.2099 -1.2825 1.0894 30 1 9.3158 0.5034 1.2268 31 1 11.1581 0.7804 -0.1277 32 1 14.2461 1.6228 -1.0669 33 1 8.3610 0.5979 -2.5267 34 1 8.7100 1.7732 -1.2235 35 1 5.5188 -0.6169 1.2450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018736834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:07 Heat of formation + Delta-G solvation = 68.586704 kcal Electronic energy + Delta-G solvation = -19876.144508 eV Core-core repulsion = 16682.990106 eV Total energy + Delta-G solvation = -3193.154402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.84647 -39.41411 -37.17794 -36.80052 -34.20132 -32.00492 -31.45424 -30.19534 -29.69329 -27.48059 -24.62733 -23.30823 -22.73923 -21.69407 -20.43376 -20.09994 -18.63722 -17.28407 -16.84468 -16.04811 -15.65849 -15.33918 -15.01283 -14.54538 -14.43919 -13.97592 -13.53526 -13.41942 -13.31275 -13.25066 -13.02478 -12.90893 -12.49014 -12.38163 -12.19458 -11.41843 -11.11076 -10.85665 -10.74739 -10.35075 -10.03402 -9.84142 -9.73236 -9.48458 -9.03555 -8.73534 -8.34227 -7.09688 -5.85635 -3.16301 1.00396 1.63829 1.89964 2.77476 3.03500 3.17311 3.40749 3.47657 3.49147 3.55986 3.69201 4.49994 4.52611 4.62018 4.83853 4.85561 5.10284 5.16016 5.29669 5.46170 5.60620 5.67677 5.72575 5.89115 6.07236 6.13794 6.21922 6.26382 6.34556 6.52570 6.63112 6.74736 6.87481 7.06075 7.65714 7.79499 8.31963 8.43876 9.44405 9.97075 10.31587 11.36472 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.047618 B = 0.003231 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.868173 B = 8662.759842 C = 9076.727546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.282 3.718 3 C 0.038 3.962 4 C -0.048 4.048 5 C -0.214 4.214 6 C 0.596 3.404 7 O -0.544 6.544 8 N -0.610 5.610 9 C 0.096 3.904 10 C -0.142 4.142 11 C 0.172 3.828 12 H 0.065 0.935 13 N -0.712 5.712 14 C -0.247 4.247 15 H 0.074 0.926 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.084 3.916 23 C 0.069 3.931 24 N -0.522 5.522 25 H 0.425 0.575 26 H 0.160 0.840 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.387 0.613 32 H 0.256 0.744 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 -5.330 8.792 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.033 4.033 3 C -0.073 4.073 4 C -0.076 4.076 5 C -0.224 4.224 6 C 0.385 3.615 7 O -0.422 6.422 8 N -0.344 5.344 9 C -0.027 4.027 10 C -0.180 4.180 11 C 0.059 3.941 12 H 0.083 0.917 13 N -0.352 5.352 14 C -0.378 4.378 15 H 0.092 0.908 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.218 1.218 22 C -0.041 4.041 23 C -0.072 4.072 24 N -0.116 5.116 25 H 0.264 0.736 26 H 0.178 0.822 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.221 0.779 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -18.879 -5.136 8.141 21.191 hybrid contribution 1.049 -0.071 -0.081 1.055 sum -17.830 -5.207 8.060 20.248 Atomic orbital electron populations 1.81327 1.11273 1.09538 1.06426 1.24298 0.90805 0.93603 0.94644 1.15179 0.83252 1.14641 0.94219 1.21115 0.90363 0.98190 0.97937 1.19695 0.93952 1.11605 0.97131 1.16967 0.81135 0.78671 0.84704 1.90790 1.86192 1.43808 1.21441 1.48351 1.05939 1.59577 1.20497 1.22299 0.97785 0.96810 0.85836 1.22930 0.92437 1.03083 0.99575 1.21315 0.85552 0.95148 0.92050 0.91729 1.42309 1.08722 1.65214 1.18986 1.19300 0.94610 1.29487 0.94367 0.90831 1.24768 0.97506 1.00396 0.97879 1.69662 1.16776 1.41181 1.30180 0.86106 0.80306 0.77404 0.82301 1.20386 1.21745 1.21808 1.23417 0.80984 1.01002 0.98743 1.23412 0.86265 1.00183 0.97314 1.41636 1.05756 1.46401 1.17801 0.73617 0.82191 0.91472 0.91366 0.90079 0.90308 0.77854 0.93401 0.90925 0.91353 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.66 18.54 41.84 0.78 -3.89 16 2 C 0.28 2.61 15.88 -22.47 -0.36 2.26 16 3 C 0.04 0.31 6.90 -83.98 -0.58 -0.27 16 4 C -0.05 -0.48 10.59 -39.05 -0.41 -0.89 16 5 C -0.21 -2.33 6.11 -105.01 -0.64 -2.97 16 6 C 0.60 9.01 7.84 -12.54 -0.10 8.92 16 7 O -0.54 -10.52 17.18 5.27 0.09 -10.43 16 8 N -0.61 -8.70 3.33 -171.81 -0.57 -9.27 16 9 C 0.10 0.96 4.99 -3.06 -0.02 0.94 16 10 C -0.14 -1.80 6.57 -24.89 -0.16 -1.96 16 11 C 0.17 3.04 3.69 -65.79 -0.24 2.80 16 12 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 13 N -0.71 -16.45 5.28 -51.36 -0.27 -16.72 16 14 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.08 1.48 6.60 -2.53 -0.02 1.46 16 23 C 0.07 0.46 10.42 -16.46 -0.17 0.29 16 24 N -0.52 -2.77 6.02 -10.29 -0.06 -2.83 16 25 H 0.43 0.80 8.96 -40.82 -0.37 0.43 16 26 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 27 H 0.07 0.50 7.03 -51.93 -0.37 0.14 16 28 H 0.07 0.50 6.82 -51.93 -0.35 0.15 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 31 H 0.39 9.43 7.71 -40.82 -0.31 9.12 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.20 0.79 4.38 -52.49 -0.23 0.56 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -33.74 308.89 -6.33 -40.06 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.70 Total: 4.31 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.95 Total: 3.58 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.60 Total: -58.93 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.74 -6.33 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018736834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.650 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds