Wall clock time and date at job start Mon Mar 30 2020 20:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36355 * 125.84248 * 116.44040 * 3 2 1 5 5 C 1.41427 * 107.01062 * 179.76548 * 4 3 2 6 6 C 1.47378 * 126.46545 * 180.24721 * 5 4 3 7 7 O 1.21605 * 120.00150 * 0.18343 * 6 5 4 8 8 N 1.34775 * 119.99745 * 180.18550 * 6 5 4 9 9 C 1.47020 * 125.64895 * 359.69481 * 8 6 5 10 10 C 1.54334 * 107.26695 * 178.84900 * 9 8 6 11 11 C 1.55154 * 103.02088 * 338.13656 * 10 9 8 12 12 H 1.09000 * 111.00489 * 277.23394 * 11 10 9 13 13 N 1.46499 * 111.00842 * 153.38322 * 11 10 9 14 14 C 1.36932 * 120.00346 * 161.35054 * 13 11 10 15 15 H 1.07999 * 120.00099 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99907 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00473 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99747 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47135 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47136 * 120.00370 * 18 16 14 21 21 H 1.48497 * 109.47521 * 240.00228 * 18 16 14 22 22 C 1.47425 * 125.64686 * 179.97438 * 8 6 5 23 23 C 1.38122 * 107.06625 * 0.38244 * 5 4 3 24 24 N 1.34427 * 108.38658 * 359.61747 * 23 5 4 25 25 H 0.97005 * 125.39326 * 180.28516 * 24 23 5 26 26 H 1.08006 * 126.49371 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.88322 * 298.38774 * 9 8 6 28 28 H 1.08996 * 109.88768 * 59.55414 * 9 8 6 29 29 H 1.09004 * 110.85134 * 219.66983 * 10 9 8 30 30 H 1.08997 * 110.51975 * 96.44667 * 10 9 8 31 31 H 0.97005 * 119.99651 * 341.34424 * 13 11 10 32 32 H 0.96991 * 119.99971 * 179.97438 * 17 16 14 33 33 H 1.08991 * 110.36944 * 322.92938 * 22 8 6 34 34 H 1.08997 * 110.36733 * 85.15004 * 22 8 6 35 35 H 1.08002 * 125.81033 * 179.88601 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3663 0.4932 -0.9897 5 6 4.7049 0.2955 -0.5785 6 6 5.9164 0.6760 -1.3266 7 8 5.8164 1.2200 -2.4096 8 7 7.1350 0.4210 -0.8105 9 6 7.3994 -0.2222 0.4849 10 6 8.9313 -0.3299 0.6386 11 6 9.4363 -0.2471 -0.8261 12 1 9.3798 -1.2199 -1.3144 13 7 10.7989 0.2880 -0.8823 14 6 11.5654 0.0931 -2.0001 15 1 11.1653 -0.4546 -2.8405 16 6 12.8564 0.6006 -2.0536 17 7 13.3439 1.2686 -1.0296 18 14 13.9023 0.3341 -3.5782 19 1 13.1283 -0.4422 -4.5800 20 1 14.2795 1.6492 -4.1558 21 1 15.1303 -0.4159 -3.2113 22 6 8.4235 0.7459 -1.4487 23 6 4.6627 -0.3243 0.6551 24 7 3.3747 -0.4962 0.9994 25 1 3.0627 -0.9048 1.8221 26 1 3.0384 0.9516 -1.9110 27 1 6.9858 0.3839 1.2910 28 1 6.9560 -1.2177 0.5019 29 1 9.2099 -1.2825 1.0894 30 1 9.3158 0.5034 1.2268 31 1 11.1581 0.7804 -0.1277 32 1 14.2461 1.6228 -1.0669 33 1 8.3610 0.5979 -2.5267 34 1 8.7100 1.7732 -1.2235 35 1 5.5188 -0.6169 1.2450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018736834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:06 Heat of formation + Delta-G solvation = 43.667980 kcal Electronic energy + Delta-G solvation = -19877.225065 eV Core-core repulsion = 16682.990106 eV Total energy + Delta-G solvation = -3194.234959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54451 -40.55577 -38.46820 -37.60358 -35.90657 -33.43741 -32.42053 -31.16554 -30.92289 -28.83143 -26.14375 -24.66548 -23.60978 -22.58169 -21.52446 -21.07424 -19.74061 -19.11465 -17.73530 -17.30444 -16.60750 -16.31092 -16.26231 -15.81903 -15.36227 -15.26072 -15.05578 -14.70229 -14.21724 -14.18405 -14.06450 -13.87236 -13.62189 -13.52728 -13.38224 -12.98253 -12.86652 -12.32315 -12.23023 -11.99610 -11.71172 -11.50027 -11.05773 -10.93100 -10.22401 -9.55725 -9.39400 -9.01995 -7.94726 -5.23349 0.35415 0.78722 1.22331 1.49030 1.51058 1.59811 2.07469 2.11446 2.27490 2.57195 2.58992 3.04763 3.37831 3.70097 3.73813 3.97499 4.11534 4.12359 4.28587 4.37962 4.46584 4.60814 4.64447 4.78091 4.92494 4.95526 5.11894 5.28709 5.32599 5.43226 5.48322 5.56218 5.59841 6.25422 6.28458 6.42274 6.71133 7.30287 7.35771 8.09077 8.31929 9.28166 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.047618 B = 0.003231 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.868173 B = 8662.759842 C = 9076.727546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.305 3.695 3 C 0.045 3.955 4 C -0.061 4.061 5 C -0.250 4.250 6 C 0.591 3.409 7 O -0.604 6.604 8 N -0.610 5.610 9 C 0.093 3.907 10 C -0.129 4.129 11 C 0.163 3.837 12 H 0.063 0.937 13 N -0.724 5.724 14 C -0.242 4.242 15 H 0.073 0.927 16 C -0.070 4.070 17 N -0.964 5.964 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.297 1.297 21 H -0.291 1.291 22 C 0.094 3.906 23 C 0.117 3.883 24 N -0.496 5.496 25 H 0.448 0.552 26 H 0.148 0.852 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.379 0.621 32 H 0.252 0.748 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 -7.219 11.219 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.010 4.010 3 C -0.067 4.067 4 C -0.089 4.089 5 C -0.259 4.259 6 C 0.383 3.617 7 O -0.487 6.487 8 N -0.342 5.342 9 C -0.029 4.029 10 C -0.168 4.168 11 C 0.052 3.948 12 H 0.081 0.919 13 N -0.363 5.363 14 C -0.374 4.374 15 H 0.091 0.909 16 C -0.262 4.262 17 N -0.615 5.615 18 Si 0.796 3.204 19 H -0.194 1.194 20 H -0.224 1.224 21 H -0.218 1.218 22 C -0.033 4.033 23 C -0.027 4.027 24 N -0.091 5.091 25 H 0.291 0.709 26 H 0.166 0.834 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.212 0.788 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -20.223 -7.080 10.621 23.914 hybrid contribution 1.369 0.498 -0.824 1.673 sum -18.854 -6.582 9.797 22.244 Atomic orbital electron populations 1.81359 1.12425 1.10933 1.07751 1.24297 0.90767 0.92467 0.93450 1.14840 0.82544 1.14803 0.94532 1.21102 0.90792 0.98715 0.98332 1.19301 0.92037 1.15315 0.99248 1.17595 0.82204 0.77609 0.84265 1.90752 1.87046 1.46625 1.24256 1.48337 1.04398 1.59657 1.21804 1.22698 0.96108 0.99522 0.84530 1.22878 0.94117 1.04382 0.95394 1.21512 0.82972 0.94166 0.96139 0.91949 1.42445 1.10638 1.65459 1.17756 1.19617 0.94818 1.27833 0.95146 0.90897 1.25473 0.98966 1.01303 1.00482 1.69785 1.16837 1.42955 1.31898 0.85182 0.78782 0.76871 0.79587 1.19367 1.22417 1.21751 1.22933 0.83426 0.99726 0.97200 1.23728 0.87367 0.96487 0.95141 1.41603 1.04906 1.44841 1.17788 0.70911 0.83434 0.87460 0.87121 0.87543 0.90718 0.78841 0.93953 0.94201 0.93748 0.74734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.65 18.54 19.01 0.35 -9.30 16 2 C 0.30 5.06 15.88 88.33 1.40 6.46 16 3 C 0.04 0.59 6.90 39.03 0.27 0.86 16 4 C -0.06 -1.14 10.59 22.62 0.24 -0.90 16 5 C -0.25 -4.80 6.11 -20.11 -0.12 -4.92 16 6 C 0.59 17.53 7.84 86.65 0.68 18.21 16 7 O -0.60 -24.46 17.18 -4.05 -0.07 -24.53 16 8 N -0.61 -16.43 3.33 -815.75 -2.71 -19.15 16 9 C 0.09 1.39 4.99 86.73 0.43 1.83 16 10 C -0.13 -2.85 6.57 31.79 0.21 -2.64 16 11 C 0.16 5.65 3.69 46.38 0.17 5.82 16 12 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 13 N -0.72 -33.75 5.28 -316.40 -1.67 -35.42 16 14 C -0.24 -12.94 9.98 84.03 0.84 -12.10 16 15 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.96 -56.94 13.06 21.65 0.28 -56.66 16 18 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 C 0.09 3.39 6.60 86.85 0.57 3.97 16 23 C 0.12 0.91 10.42 84.27 0.88 1.79 16 24 N -0.50 -2.71 6.02 -186.46 -1.12 -3.83 16 25 H 0.45 -1.01 8.96 -92.70 -0.83 -1.84 16 26 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 27 H 0.11 0.87 7.03 -2.39 -0.02 0.86 16 28 H 0.11 0.83 6.82 -2.39 -0.02 0.81 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 31 H 0.38 18.71 7.71 -92.70 -0.71 18.00 16 32 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.24 0.00 4.38 -2.91 -0.01 -0.01 16 Total: -1.00 -79.32 308.89 2.74 -76.58 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -0.38 Total: 9.89 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 6.04 Total: 14.96 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -4.87 Total: -124.36 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.53 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -79.32 2.74 -76.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018736834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.245 kcal (2) G-P(sol) polarization free energy of solvation -79.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds