Wall clock time and date at job start Mon Mar 30 2020 20:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48500 * 109.47293 * 270.00307 * 3 2 1 5 5 H 1.48502 * 109.47177 * 30.00056 * 3 2 1 6 6 H 1.48502 * 109.47440 * 149.99809 * 3 2 1 7 7 C 1.38814 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00024 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00195 * 179.97438 * 7 2 1 10 10 C 1.46507 * 120.00046 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47211 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47105 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00039 * 179.97438 * 12 11 10 14 14 O 1.21643 * 119.99900 * 0.02562 * 13 12 11 15 15 C 1.47070 * 119.99882 * 179.97438 * 13 12 11 16 16 C 1.35905 * 125.42094 * 179.97438 * 15 13 12 17 17 C 1.41421 * 107.67335 * 180.02562 * 16 15 13 18 18 C 1.39844 * 134.34625 * 179.97438 * 17 16 15 19 19 N 1.31560 * 120.03965 * 180.02562 * 18 17 16 20 20 C 1.32362 * 122.32195 * 359.97438 * 19 18 17 21 21 C 1.36640 * 121.64721 * 0.03112 * 20 19 18 22 22 C 1.39435 * 119.00981 * 359.97152 * 21 20 19 23 23 N 1.36885 * 134.32673 * 179.97438 * 22 21 20 24 24 H 0.96994 * 125.58393 * 359.76465 * 23 22 21 25 25 H 0.97003 * 120.00142 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00064 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46649 * 60.00176 * 10 9 7 28 28 H 1.09002 * 109.47022 * 300.00390 * 10 9 7 29 29 H 1.09003 * 109.47145 * 59.99896 * 11 10 9 30 30 H 1.09002 * 109.47114 * 299.99927 * 11 10 9 31 31 H 0.97001 * 119.99997 * 0.02562 * 12 11 10 32 32 H 1.08006 * 126.16212 * 0.04387 * 16 15 13 33 33 H 1.08000 * 119.98192 * 0.02788 * 18 17 16 34 34 H 1.07998 * 119.17660 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.49433 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 7 6.3489 -3.4599 -0.0006 13 6 7.6967 -3.4599 -0.0012 14 8 8.3049 -2.4064 -0.0008 15 6 8.4321 -4.7335 -0.0013 16 6 9.7851 -4.8619 -0.0024 17 6 10.0852 -6.2439 -0.0026 18 6 11.2699 -6.9869 -0.0040 19 7 11.2228 -8.3017 -0.0043 20 6 10.0796 -8.9688 -0.0029 21 6 8.8741 -8.3255 -0.0016 22 6 8.8516 -6.9314 -0.0012 23 7 7.8570 -5.9908 -0.0004 24 1 6.9050 -6.1761 -0.0032 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3620 -0.0004 27 1 3.8485 -3.0425 -0.8898 28 1 3.8492 -3.0422 0.8902 29 1 5.8797 -1.6196 0.8900 30 1 5.8797 -1.6196 -0.8900 31 1 5.8640 -4.2999 -0.0013 32 1 10.5019 -4.0540 -0.0027 33 1 12.2242 -6.4811 -0.0048 34 1 10.1001 -10.0486 -0.0028 35 1 7.9525 -8.8886 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130266008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:11 Heat of formation + Delta-G solvation = 22.453139 kcal Electronic energy + Delta-G solvation = -19335.953418 eV Core-core repulsion = 16140.798515 eV Total energy + Delta-G solvation = -3195.154903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.91044 -40.74769 -38.87618 -37.53460 -35.70187 -33.57156 -33.41683 -31.87990 -30.60230 -29.68466 -26.20420 -24.72247 -23.86234 -23.21387 -22.60731 -21.34155 -20.12445 -19.59262 -18.62856 -17.27227 -16.94599 -16.67056 -16.51957 -16.28155 -15.99812 -15.68802 -15.37231 -15.14172 -15.12041 -14.76146 -14.59245 -14.15059 -13.74775 -13.49165 -13.23922 -12.75048 -12.66629 -12.48163 -12.10593 -11.84922 -11.52371 -11.15927 -11.06064 -10.54045 -10.39392 -9.90530 -9.39066 -9.02871 -8.06992 -5.42801 -0.44855 0.49277 0.90747 1.38870 1.40635 1.47752 1.64427 1.86692 2.12895 2.45571 2.93561 3.24991 3.43838 3.55031 3.66281 3.74191 3.91621 3.93248 4.06811 4.14807 4.24255 4.49410 4.53857 4.71480 4.88753 4.89420 4.97223 5.04120 5.13923 5.27073 5.43933 5.70214 5.78561 6.15075 6.18066 6.34588 6.89136 7.01725 7.10651 7.75541 7.92747 9.13626 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.046533 B = 0.002830 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.584189 B = 9890.828530 C =10471.965852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.239 4.239 8 H 0.064 0.936 9 N -0.758 5.758 10 C 0.149 3.851 11 C 0.121 3.879 12 N -0.706 5.706 13 C 0.585 3.415 14 O -0.558 6.558 15 C 0.008 3.992 16 C -0.090 4.090 17 C -0.194 4.194 18 C 0.174 3.826 19 N -0.529 5.529 20 C 0.098 3.902 21 C -0.179 4.179 22 C 0.134 3.866 23 N -0.558 5.558 24 H 0.434 0.566 25 H 0.259 0.741 26 H 0.367 0.633 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.413 0.587 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.184 0.816 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.875 -17.954 0.007 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.252 4.252 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.358 5.358 13 C 0.372 3.628 14 O -0.437 6.437 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.201 4.201 18 C 0.006 3.994 19 N -0.239 5.239 20 C -0.049 4.049 21 C -0.201 4.201 22 C 0.015 3.985 23 N -0.164 5.164 24 H 0.276 0.724 25 H 0.068 0.932 26 H 0.201 0.799 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.184 0.816 33 H 0.198 0.802 34 H 0.201 0.799 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 22.600 -17.817 0.012 28.779 hybrid contribution -1.680 1.283 -0.003 2.114 sum 20.920 -16.534 0.009 26.665 Atomic orbital electron populations 1.69865 1.07085 1.26873 1.59151 1.25503 0.96120 1.01317 1.02286 0.85449 0.78715 0.79674 0.78207 1.20358 1.22166 1.17607 1.18987 0.82191 0.93756 1.42002 0.91847 1.42527 1.02754 1.03926 1.91286 1.20839 0.88586 0.88379 0.99937 1.21343 0.90824 0.85563 1.02551 1.45564 1.05490 1.10343 1.74362 1.17315 0.81871 0.87261 0.76342 1.90856 1.68821 1.32423 1.51553 1.19960 0.93409 0.83857 1.12894 1.21065 0.93456 0.95699 1.01593 1.19371 0.95066 0.94115 1.11557 1.22889 0.97241 0.88883 0.90381 1.67730 1.30886 1.09297 1.16003 1.22631 0.86409 1.01602 0.94235 1.21122 1.01845 0.89704 1.07451 1.18673 0.88039 0.91919 0.99865 1.41765 1.09004 1.03032 1.62563 0.72442 0.93169 0.79926 0.93924 0.94034 0.91389 0.91277 0.75078 0.81559 0.80163 0.79928 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.55 13.97 21.65 0.30 -61.25 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 3 Si 0.95 44.58 27.73 68.60 1.90 46.48 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 7 C -0.24 -13.13 10.47 84.04 0.88 -12.25 16 8 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 9 N -0.76 -33.64 5.41 -343.44 -1.86 -35.49 16 10 C 0.15 4.92 6.37 86.38 0.55 5.47 16 11 C 0.12 3.37 5.79 86.38 0.50 3.87 16 12 N -0.71 -15.12 5.55 -466.71 -2.59 -17.71 16 13 C 0.59 14.32 7.80 86.56 0.68 14.99 16 14 O -0.56 -18.02 16.84 -4.17 -0.07 -18.09 16 15 C 0.01 0.16 6.97 39.91 0.28 0.44 16 16 C -0.09 -1.74 10.53 22.51 0.24 -1.50 16 17 C -0.19 -3.49 6.21 -21.37 -0.13 -3.62 16 18 C 0.17 2.83 11.29 85.12 0.96 3.79 16 19 N -0.53 -9.28 10.33 -195.62 -2.02 -11.30 16 20 C 0.10 1.30 11.09 84.24 0.93 2.24 16 21 C -0.18 -2.16 10.09 22.18 0.22 -1.94 16 22 C 0.13 2.13 7.32 39.38 0.29 2.42 16 23 N -0.56 -7.93 6.05 -177.04 -1.07 -9.00 16 24 H 0.43 3.56 8.12 -92.71 -0.75 2.81 16 25 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.37 15.76 5.53 -92.71 -0.51 15.25 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.41 6.09 7.53 -92.71 -0.70 5.39 16 32 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -74.64 308.40 -0.41 -75.05 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.87 Total: 20.40 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.86 Total: 10.91 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -7.24 Total: -134.75 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.07 Total: -18.09 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Total: -74.64 -0.41 -75.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130266008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.502 kcal (2) G-P(sol) polarization free energy of solvation -74.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds