Wall clock time and date at job start Mon Mar 30 2020 20:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00004 * 2 1 4 4 H 1.48499 * 109.47606 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47209 * 299.99802 * 3 2 1 6 6 H 1.48508 * 109.47109 * 59.99736 * 3 2 1 7 7 C 1.38813 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99664 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46942 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47135 * 180.02562 * 11 10 9 13 13 C 1.34786 * 120.00126 * 180.02562 * 12 11 10 14 14 O 1.21631 * 119.99712 * 0.02562 * 13 12 11 15 15 C 1.47219 * 120.00215 * 179.97438 * 13 12 11 16 16 C 1.38948 * 120.85840 * 0.02562 * 15 13 12 17 17 C 1.39740 * 119.29118 * 179.71921 * 16 15 13 18 18 C 1.35112 * 121.14371 * 0.27542 * 17 16 15 19 19 N 1.36143 * 121.72541 * 359.95534 * 18 17 16 20 20 C 1.36999 * 132.64867 * 180.02562 * 19 18 17 21 21 C 1.34966 * 107.15341 * 180.02562 * 20 19 18 22 22 N 1.33746 * 108.60083 * 0.02562 * 21 20 19 23 23 C 1.31979 * 109.17151 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00078 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99892 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.46819 * 60.00444 * 10 9 7 27 27 H 1.08997 * 109.47337 * 300.00146 * 10 9 7 28 28 H 1.09003 * 109.46868 * 60.00161 * 11 10 9 29 29 H 1.09002 * 109.47359 * 300.00772 * 11 10 9 30 30 H 0.96996 * 120.00250 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.35719 * 0.02562 * 16 15 13 32 32 H 1.08001 * 119.42803 * 180.24897 * 17 16 15 33 33 H 1.08000 * 119.13822 * 179.97438 * 18 17 16 34 34 H 1.07994 * 126.42167 * 359.96878 * 20 19 18 35 35 H 1.07991 * 125.69669 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7964 -6.0883 0.0018 13 6 1.1225 -7.2556 0.0019 14 8 -0.0938 -7.2556 0.0010 15 6 1.8586 -8.5306 0.0020 16 6 3.2480 -8.5514 0.0024 17 6 3.9133 -9.7802 0.0084 18 6 3.2291 -10.9453 0.0082 19 7 1.8681 -10.9763 0.0031 20 6 0.9630 -12.0048 0.0022 21 6 -0.2681 -11.4517 -0.0045 22 7 -0.1377 -10.1206 -0.0082 23 6 1.1451 -9.8107 -0.0036 24 1 -0.4850 0.8400 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 2.6847 -3.7144 0.8906 27 1 2.6848 -3.7145 -0.8894 28 1 0.4370 -4.7621 -0.8886 29 1 0.4375 -4.7617 0.8913 30 1 2.7664 -6.0884 0.0021 31 1 3.8077 -7.6278 0.0032 32 1 4.9931 -9.7990 0.0129 33 1 3.7763 -11.8765 0.0125 34 1 1.1918 -13.0602 0.0052 35 1 -1.2023 -11.9934 -0.0065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135253561.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:36 Heat of formation + Delta-G solvation = 49.120956 kcal Electronic energy + Delta-G solvation = -19589.006277 eV Core-core repulsion = 16395.007777 eV Total energy + Delta-G solvation = -3193.998500 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.67470 -40.71912 -38.16100 -37.30906 -35.53892 -34.57179 -33.10049 -31.28727 -30.19164 -29.03717 -26.12811 -25.10934 -23.64408 -23.22457 -22.79287 -21.68517 -19.43425 -18.95873 -18.40220 -17.52099 -17.00559 -16.87185 -16.51060 -16.48572 -16.26551 -15.39712 -15.13052 -15.07611 -15.01011 -14.57759 -14.48030 -13.52816 -13.14985 -13.13439 -13.02079 -12.85719 -12.69952 -12.48779 -12.03090 -11.90883 -11.84714 -11.21977 -10.99638 -10.88125 -10.21901 -9.80978 -9.05954 -8.92680 -7.95679 -5.27467 -0.68651 0.31391 1.47996 1.50676 1.51243 1.61347 1.69349 1.96445 2.08292 2.58731 2.62564 3.13243 3.38882 3.43315 3.70935 3.86407 3.87208 4.03631 4.15018 4.21570 4.37277 4.49507 4.56784 4.60840 4.74074 4.94022 5.02852 5.03882 5.14013 5.32683 5.43561 5.50363 5.62687 6.08880 6.24834 6.50249 6.97023 7.19316 7.30802 8.02718 8.25542 9.28483 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.044120 B = 0.002932 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.476981 B = 9546.582361 C =10160.607665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.245 4.245 8 H 0.087 0.913 9 N -0.749 5.749 10 C 0.151 3.849 11 C 0.129 3.871 12 N -0.702 5.702 13 C 0.554 3.446 14 O -0.568 6.568 15 C -0.146 4.146 16 C -0.018 4.018 17 C -0.157 4.157 18 C 0.093 3.907 19 N -0.377 5.377 20 C -0.077 4.077 21 C -0.007 4.007 22 N -0.533 5.533 23 C 0.221 3.779 24 H 0.252 0.748 25 H 0.373 0.627 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.417 0.583 31 H 0.180 0.820 32 H 0.208 0.792 33 H 0.216 0.784 34 H 0.234 0.766 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.058 -28.963 0.038 32.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.105 0.895 9 N -0.392 5.392 10 C 0.024 3.976 11 C 0.004 3.996 12 N -0.356 5.356 13 C 0.342 3.658 14 O -0.447 6.447 15 C -0.152 4.152 16 C -0.042 4.042 17 C -0.177 4.177 18 C -0.029 4.029 19 N -0.051 5.051 20 C -0.206 4.206 21 C -0.155 4.155 22 N -0.252 5.252 23 C -0.026 4.026 24 H 0.060 0.940 25 H 0.204 0.796 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.256 0.744 31 H 0.197 0.803 32 H 0.225 0.775 33 H 0.233 0.767 34 H 0.250 0.750 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.686 -28.398 0.034 31.524 hybrid contribution 0.038 0.642 0.000 0.643 sum 13.724 -27.756 0.034 30.963 Atomic orbital electron populations 1.69858 1.06965 1.26201 1.59334 1.25713 0.96431 1.01613 1.03470 0.84970 0.78422 0.79187 0.76513 1.18286 1.22171 1.22180 1.19714 0.91833 0.84700 1.41387 0.89534 1.42469 1.05793 1.01209 1.89778 1.20851 0.93393 0.83684 0.99654 1.21167 0.94976 0.82380 1.01039 1.45466 1.10984 1.04104 1.75077 1.18147 0.86966 0.84143 0.76569 1.90858 1.15545 1.87878 1.50391 1.19987 0.93958 0.88184 1.13088 1.22243 0.90174 1.02023 0.89754 1.21271 1.03623 0.88949 1.03889 1.22735 0.79597 1.03820 0.96718 1.43227 1.07558 1.07743 1.46525 1.23373 0.87523 0.94879 1.14829 1.23217 0.99702 0.89305 1.03314 1.70725 1.15780 1.16164 1.22569 1.21724 0.87310 0.87651 1.05920 0.93961 0.79583 0.93947 0.93941 0.93053 0.93054 0.74446 0.80268 0.77481 0.76699 0.74972 0.78537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.04 13.06 21.65 0.28 -60.75 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 8 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.75 -38.67 5.60 -343.46 -1.92 -40.59 16 10 C 0.15 5.77 6.37 86.38 0.55 6.32 16 11 C 0.13 4.71 5.79 86.38 0.50 5.21 16 12 N -0.70 -19.96 5.51 -466.56 -2.57 -22.53 16 13 C 0.55 18.91 7.77 86.60 0.67 19.58 16 14 O -0.57 -26.03 16.20 -4.13 -0.07 -26.09 16 15 C -0.15 -3.80 6.06 -18.58 -0.11 -3.91 16 16 C -0.02 -0.23 9.63 22.80 0.22 -0.01 16 17 C -0.16 -0.89 9.91 21.91 0.22 -0.67 16 18 C 0.09 0.69 10.88 83.30 0.91 1.60 16 19 N -0.38 -6.75 2.94 -347.21 -1.02 -7.78 16 20 C -0.08 -1.18 11.76 83.13 0.98 -0.21 16 21 C -0.01 -0.17 11.83 83.65 0.99 0.81 16 22 N -0.53 -18.51 10.70 -189.72 -2.03 -20.54 16 23 C 0.22 6.45 7.67 135.76 1.04 7.49 16 24 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 25 H 0.37 21.04 7.67 -92.71 -0.71 20.33 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.42 7.88 6.57 -92.71 -0.61 7.27 16 31 H 0.18 1.06 6.48 -2.91 -0.02 1.04 16 32 H 0.21 -0.84 8.06 -2.91 -0.02 -0.87 16 33 H 0.22 -0.64 8.06 -2.91 -0.02 -0.67 16 34 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.20 3.39 8.06 -2.92 -0.02 3.37 16 Total: -1.00 -92.07 309.70 1.78 -90.29 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.18 Total: 20.73 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 7.27 Total: 19.29 kcal Atomic # 7 Polarization: -144.93 SS G_CDS: -7.26 Total: -152.19 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.07 Total: -26.09 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -92.07 1.78 -90.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135253561.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.413 kcal (2) G-P(sol) polarization free energy of solvation -92.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds