Wall clock time and date at job start Mon Mar 30 2020 20:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40201 * 119.86112 * 2 1 4 4 C 1.35579 * 119.45725 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.42806 * 180.02562 * 4 3 2 6 6 N 1.36442 * 119.14600 * 0.02562 * 4 3 2 7 7 N 1.39950 * 132.45334 * 180.34872 * 6 4 3 8 8 C 1.31809 * 108.80528 * 180.02562 * 7 6 4 9 9 N 1.39993 * 125.59352 * 179.83918 * 8 7 6 10 10 C 1.34773 * 120.00469 * 179.69305 * 9 8 7 11 11 O 1.21293 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00046 * 179.72976 * 10 9 8 13 13 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 14 14 H 1.08001 * 120.00037 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00214 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00297 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99907 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99860 * 17 15 13 19 19 H 1.48503 * 109.47098 * 209.99926 * 17 15 13 20 20 H 1.48504 * 109.46915 * 329.99781 * 17 15 13 21 21 C 1.39272 * 108.82124 * 359.58225 * 8 7 6 22 22 C 1.37217 * 119.78370 * 359.97038 * 6 4 3 23 23 N 1.31238 * 119.86501 * 179.97438 * 2 1 3 24 24 H 1.09009 * 109.47104 * 270.01813 * 1 2 3 25 25 H 1.09003 * 109.47484 * 30.01426 * 1 2 3 26 26 H 1.08997 * 109.47205 * 150.01785 * 1 2 3 27 27 H 1.07993 * 120.27287 * 0.03170 * 3 2 1 28 28 H 1.09005 * 109.46742 * 90.00091 * 5 4 3 29 29 H 1.08990 * 109.47377 * 210.00625 * 5 4 3 30 30 H 1.08999 * 109.46795 * 330.01172 * 5 4 3 31 31 H 0.97000 * 120.00008 * 359.70443 * 9 8 7 32 32 H 1.09003 * 109.47174 * 300.27142 * 12 10 9 33 33 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 34 34 H 0.96997 * 120.00400 * 179.97438 * 16 15 13 35 35 H 1.08000 * 126.19542 * 180.26312 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.2159 0.0000 4 6 3.5608 1.2063 0.0005 5 6 4.3332 2.5003 0.0011 6 7 4.2169 0.0100 0.0005 7 7 5.5765 -0.3217 0.0073 8 6 5.6936 -1.6346 0.0032 9 7 6.8998 -2.3451 0.0045 10 6 6.8882 -3.6928 0.0062 11 8 5.8325 -4.2902 0.0062 12 6 8.1867 -4.4575 0.0015 13 6 7.8985 -5.9368 -0.0024 14 1 6.8772 -6.2880 -0.0010 15 6 8.9386 -6.8418 -0.0076 16 7 8.6872 -8.1327 -0.0104 17 14 10.7051 -6.2344 -0.0106 18 1 11.1769 -6.0772 1.3886 19 1 11.5656 -7.2182 -0.7156 20 1 10.7771 -4.9249 -0.7073 21 6 4.4204 -2.1992 0.0034 22 6 3.5005 -1.1603 0.0006 23 7 2.1605 -1.1381 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6673 2.1524 0.0005 28 1 4.5190 2.8120 1.0290 29 1 5.2837 2.3564 -0.5124 30 1 3.7552 3.2686 -0.5126 31 1 7.7440 -1.8674 0.0044 32 1 8.7588 -4.1966 -0.8889 33 1 8.7623 -4.2019 0.8911 34 1 9.4189 -8.7694 -0.0145 35 1 4.1907 -3.2545 0.0046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:45 Heat of formation + Delta-G solvation = 56.052669 kcal Electronic energy + Delta-G solvation = -19998.782731 eV Core-core repulsion = 16805.084813 eV Total energy + Delta-G solvation = -3193.697918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.46050 -41.08484 -39.20035 -36.29814 -35.52845 -35.06373 -32.84341 -31.86946 -30.63344 -29.41075 -28.51260 -26.02206 -23.87803 -23.32733 -22.21262 -21.16802 -19.50489 -19.06964 -18.84184 -17.45774 -17.43823 -16.72085 -16.36007 -16.10124 -15.91287 -15.28260 -15.12785 -14.75435 -14.37092 -14.35845 -14.24173 -13.82426 -13.64311 -13.26962 -13.00776 -12.96329 -12.84355 -12.43745 -12.38886 -12.23432 -11.87266 -11.56548 -11.15945 -10.87802 -10.79852 -10.74342 -9.84002 -8.92453 -8.26460 -6.36583 -0.43257 -0.23628 0.74700 1.11201 1.42106 1.46221 1.56168 1.89824 1.96137 2.33435 2.38887 2.74130 3.06867 3.16654 3.35349 3.81890 3.96685 4.21177 4.24896 4.34225 4.49781 4.51020 4.60006 4.64768 4.78165 4.86165 4.89372 4.98712 5.01618 5.10351 5.31650 5.38024 5.46332 5.55186 6.01479 6.26324 6.58850 6.66771 6.79712 7.11894 7.28112 8.90912 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.036953 B = 0.003670 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.533977 B = 7627.446412 C = 8359.213714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.206 3.794 3 C -0.218 4.218 4 C 0.180 3.820 5 C -0.112 4.112 6 N -0.311 5.311 7 N -0.348 5.348 8 C 0.339 3.661 9 N -0.627 5.627 10 C 0.529 3.471 11 O -0.541 6.541 12 C -0.017 4.017 13 C -0.539 4.539 14 H 0.031 0.969 15 C 0.004 3.996 16 N -0.952 5.952 17 Si 0.961 3.039 18 H -0.261 1.261 19 H -0.287 1.287 20 H -0.225 1.225 21 C -0.315 4.315 22 C 0.271 3.729 23 N -0.518 5.518 24 H 0.105 0.895 25 H 0.125 0.875 26 H 0.073 0.927 27 H 0.223 0.777 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.433 0.567 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.269 0.731 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 29.462 0.017 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.045 3.955 3 C -0.241 4.241 4 C 0.065 3.935 5 C -0.169 4.169 6 N -0.084 5.084 7 N -0.183 5.183 8 C 0.091 3.909 9 N -0.278 5.278 10 C 0.318 3.682 11 O -0.415 6.415 12 C -0.057 4.057 13 C -0.577 4.577 14 H 0.049 0.951 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.781 3.219 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.148 1.148 21 C -0.347 4.347 22 C 0.042 3.958 23 N -0.234 5.234 24 H 0.124 0.876 25 H 0.143 0.857 26 H 0.092 0.908 27 H 0.239 0.761 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.273 0.727 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.051 28.908 0.013 30.948 hybrid contribution 1.041 -0.971 0.044 1.424 sum -10.010 27.936 0.057 29.676 Atomic orbital electron populations 1.21020 0.83875 1.05808 1.05369 1.22851 0.99831 0.87217 0.85609 1.22072 0.90607 1.02282 1.09159 1.21725 0.93120 0.86084 0.92619 1.21143 1.00459 0.89565 1.05726 1.46895 1.05866 1.06834 1.48841 1.77658 0.90606 1.10541 1.39472 1.19034 0.87781 0.89922 0.94197 1.43011 1.06049 1.06008 1.72716 1.21739 0.93314 0.80073 0.73046 1.90561 1.34617 1.68910 1.47405 1.19634 0.90605 0.93731 1.01725 1.21116 0.94341 0.90198 1.52032 0.95055 1.26118 1.05153 0.94527 0.93490 1.70086 1.34417 1.02980 1.51674 0.85545 0.76649 0.80004 0.79677 1.18584 1.21267 1.14778 1.21200 0.89350 0.99625 1.24535 1.20546 0.89067 0.86533 0.99611 1.68156 1.03090 1.31447 1.20698 0.87632 0.85698 0.90767 0.76086 0.87635 0.90897 0.84740 0.72744 0.89901 0.90058 0.92204 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.19 71.24 0.73 -0.25 16 2 C 0.21 3.99 6.83 43.12 0.29 4.28 16 3 C -0.22 -2.83 9.37 22.13 0.21 -2.63 16 4 C 0.18 3.42 6.85 41.23 0.28 3.70 16 5 C -0.11 -1.11 10.10 71.24 0.72 -0.39 16 6 N -0.31 -9.63 3.89 -180.79 -0.70 -10.33 16 7 N -0.35 -11.89 12.53 -54.99 -0.69 -12.58 16 8 C 0.34 13.34 8.05 132.93 1.07 14.41 16 9 N -0.63 -22.97 5.44 -308.15 -1.68 -24.64 16 10 C 0.53 24.19 7.79 87.66 0.68 24.87 16 11 O -0.54 -30.09 12.54 -3.07 -0.04 -30.13 16 12 C -0.02 -0.78 4.53 29.10 0.13 -0.65 16 13 C -0.54 -32.31 9.48 25.60 0.24 -32.07 16 14 H 0.03 2.22 7.00 -2.91 -0.02 2.20 16 15 C 0.00 0.23 5.47 84.65 0.46 0.69 16 16 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 17 Si 0.96 41.54 27.47 68.60 1.88 43.42 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 19 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.23 -8.26 6.54 99.48 0.65 -7.61 16 21 C -0.31 -13.77 9.70 22.65 0.22 -13.55 16 22 C 0.27 10.05 7.91 133.08 1.05 11.10 16 23 N -0.52 -16.52 10.40 -180.69 -1.88 -18.40 16 24 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.12 0.18 8.09 -2.39 -0.02 0.16 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.22 0.17 8.06 -2.91 -0.02 0.15 16 28 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 30 H 0.13 0.21 8.09 -2.39 -0.02 0.19 16 31 H 0.43 11.95 8.82 -92.71 -0.82 11.13 16 32 H 0.08 3.31 7.20 -2.39 -0.02 3.29 16 33 H 0.08 3.21 7.57 -2.39 -0.02 3.19 16 34 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 35 H 0.15 7.64 5.85 -2.91 -0.02 7.62 16 Total: -1.00 -90.44 304.79 3.55 -86.89 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.26 Total: 17.09 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.09 Total: 9.52 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -4.65 Total: -126.80 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.04 Total: -30.13 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -90.44 3.55 -86.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.942 kcal (2) G-P(sol) polarization free energy of solvation -90.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds