Wall clock time and date at job start Mon Mar 30 2020 20:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21695 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.46636 * 119.99673 * 179.97438 * 13 12 11 16 16 N 1.35956 * 126.86895 * 359.68767 * 15 13 12 17 17 H 0.96995 * 124.13837 * 0.02562 * 16 15 13 18 18 N 1.28414 * 111.72136 * 179.83516 * 16 15 13 19 19 C 1.32255 * 111.44643 * 0.44594 * 18 16 15 20 20 N 1.33958 * 135.18655 * 179.76384 * 19 18 16 21 21 C 1.30875 * 121.17524 * 179.97438 * 20 19 18 22 22 C 1.39461 * 122.64516 * 359.97438 * 21 20 19 23 23 C 1.36530 * 120.49146 * 0.02562 * 22 21 20 24 24 C 1.39975 * 126.86634 * 179.97438 * 15 13 12 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.08001 * 118.67818 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.75260 * 180.02562 * 22 21 20 35 35 H 1.08000 * 121.00972 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7861 -7.5937 0.0020 15 6 2.9354 -8.4860 0.0020 16 7 4.2922 -8.3992 -0.0040 17 1 4.7841 -7.5633 -0.0087 18 7 4.8426 -9.5594 0.0013 19 6 3.9377 -10.5239 0.0016 20 7 3.9760 -11.8630 0.0020 21 6 2.8761 -12.5722 0.0027 22 6 1.6075 -11.9930 0.0036 23 6 1.4659 -10.6351 0.0032 24 6 2.6299 -9.8520 0.0026 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 2.9541 -13.6494 0.0027 34 1 0.7306 -12.6234 0.0046 35 1 0.4876 -10.1777 0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149406223.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:58 Heat of formation + Delta-G solvation = 32.460984 kcal Electronic energy + Delta-G solvation = -19448.993500 eV Core-core repulsion = 16254.272570 eV Total energy + Delta-G solvation = -3194.720931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.83063 -40.69525 -39.62564 -37.10672 -35.30961 -34.13202 -33.28652 -32.20761 -31.42848 -28.68390 -26.57402 -25.44558 -24.02025 -23.42733 -22.41130 -21.15232 -20.03691 -19.37225 -18.55679 -17.47751 -17.42159 -17.05287 -16.58380 -16.54697 -16.38490 -16.02714 -15.36602 -15.04995 -14.28782 -14.14241 -14.07900 -13.79035 -13.55903 -13.42918 -12.73842 -12.68924 -12.57062 -12.44105 -11.90076 -11.73353 -11.69265 -11.35010 -11.17661 -10.55033 -10.36736 -10.31927 -10.14536 -9.38939 -8.20175 -6.31229 -0.91368 0.21403 0.91527 1.31503 1.41753 1.43825 1.51674 1.78026 1.90130 2.41408 2.62098 2.78607 3.13780 3.14093 3.63775 3.74928 3.99037 4.11088 4.15006 4.19425 4.46294 4.51949 4.60544 4.85082 4.92417 5.05785 5.15578 5.21998 5.26097 5.49774 5.51629 5.69187 5.70684 5.84187 6.18630 6.23262 6.39150 6.84952 6.86583 6.93691 7.38495 8.91544 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.049752 B = 0.002765 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.650809 B =10123.169371 C =10660.070002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.130 3.870 12 N -0.704 5.704 13 C 0.592 3.408 14 O -0.551 6.551 15 C -0.011 4.011 16 N -0.288 5.288 17 H 0.470 0.530 18 N -0.269 5.269 19 C 0.201 3.799 20 N -0.488 5.488 21 C 0.176 3.824 22 C -0.170 4.170 23 C -0.028 4.028 24 C -0.176 4.176 25 H 0.263 0.737 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.413 0.587 33 H 0.211 0.789 34 H 0.184 0.816 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 -22.671 -0.010 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.142 4.142 11 C 0.006 3.994 12 N -0.355 5.355 13 C 0.377 3.623 14 O -0.427 6.427 15 C -0.151 4.151 16 N -0.005 5.005 17 H 0.321 0.679 18 N -0.111 5.111 19 C -0.053 4.053 20 N -0.200 5.200 21 C -0.007 4.007 22 C -0.191 4.191 23 C -0.056 4.056 24 C -0.188 4.188 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.227 0.773 34 H 0.201 0.799 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.054 -22.750 -0.012 24.133 hybrid contribution -0.866 2.085 0.001 2.258 sum 7.188 -20.664 -0.011 21.879 Atomic orbital electron populations 1.70095 1.07880 1.27834 1.51640 1.25988 0.95711 1.03447 0.94867 0.85516 0.78225 0.78174 0.79224 1.19083 1.21320 1.19095 1.21663 0.93766 0.92056 1.50478 0.91509 1.18939 0.94467 0.92788 0.95281 1.21629 0.98559 0.91592 1.02440 1.21400 0.91643 0.84523 1.01784 1.45810 1.11426 1.04575 1.73731 1.16788 0.86778 0.81735 0.77046 1.90848 1.16158 1.84541 1.51184 1.21051 0.85148 0.94802 1.14075 1.43758 1.03837 1.08345 1.44523 0.67941 1.73378 1.23023 0.90219 1.24510 1.21168 0.87872 0.91854 1.04429 1.67234 1.33633 1.02358 1.16762 1.23764 0.86191 1.01804 0.88900 1.22243 1.00670 0.94588 1.01558 1.21003 0.96916 0.94125 0.93580 1.20472 0.97810 0.91919 1.08563 0.92828 0.98765 0.98756 0.91080 0.91068 0.92120 0.92132 0.75058 0.77278 0.79870 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -29.00 9.11 25.60 0.23 -28.76 16 8 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.59 5.27 30.59 0.16 -3.42 16 11 C 0.13 3.97 5.67 86.38 0.49 4.46 16 12 N -0.70 -16.27 5.55 -467.11 -2.59 -18.87 16 13 C 0.59 15.73 7.79 86.44 0.67 16.40 16 14 O -0.55 -18.66 16.27 -4.33 -0.07 -18.73 16 15 C -0.01 -0.26 7.17 41.12 0.29 0.03 16 16 N -0.29 -5.37 6.71 -47.78 -0.32 -5.69 16 17 H 0.47 4.66 8.13 -220.03 -1.79 2.87 16 18 N -0.27 -6.60 12.17 -53.02 -0.65 -7.25 16 19 C 0.20 5.30 8.65 136.84 1.18 6.48 16 20 N -0.49 -11.51 10.44 -189.95 -1.98 -13.49 16 21 C 0.18 2.56 11.09 85.13 0.94 3.50 16 22 C -0.17 -2.27 10.00 22.17 0.22 -2.05 16 23 C -0.03 -0.58 9.92 22.37 0.22 -0.36 16 24 C -0.18 -4.42 6.30 -20.05 -0.13 -4.55 16 25 H 0.26 14.84 8.31 -92.70 -0.77 14.06 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.41 6.33 7.58 -92.71 -0.70 5.62 16 33 H 0.21 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.14 2.98 7.62 -2.91 -0.02 2.96 16 Total: -1.00 -76.20 311.03 0.26 -75.94 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -1.35 Total: 5.49 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.91 Total: -6.66 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.26 Total: -100.73 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.07 Total: -18.73 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -76.20 0.26 -75.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149406223.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.405 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds