Wall clock time and date at job start Mon Mar 30 2020 20:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 120.00389 * 2 1 4 4 C 1.38214 * 120.00421 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99629 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99946 * 359.76535 * 5 4 3 7 7 C 1.38213 * 119.99650 * 180.02562 * 2 1 3 8 8 C 1.50696 * 120.00250 * 359.97438 * 7 2 1 9 9 H 1.09004 * 115.56587 * 334.31110 * 8 7 2 10 10 C 1.53000 * 117.50175 * 188.62305 * 8 7 2 11 11 C 1.52997 * 60.00347 * 252.51187 * 10 8 7 12 12 H 1.08997 * 117.50044 * 107.48590 * 11 10 8 13 13 C 1.50698 * 117.51636 * 252.52170 * 11 10 8 14 14 O 1.20822 * 120.00464 * 68.62258 * 13 11 10 15 15 O 1.34228 * 119.99917 * 248.62515 * 13 11 10 16 16 C 1.45203 * 117.00467 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.46714 * 329.99436 * 16 15 13 18 18 C 1.52996 * 109.47331 * 89.99575 * 16 15 13 19 19 C 1.50696 * 109.47027 * 210.00207 * 16 15 13 20 20 H 1.07997 * 120.00416 * 359.97438 * 19 16 15 21 21 C 1.37877 * 119.99656 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00466 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99852 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47360 * 59.99609 * 23 21 19 25 25 H 1.48506 * 109.46944 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47029 * 299.99396 * 23 21 19 27 27 H 1.08999 * 109.46962 * 269.97738 * 1 2 3 28 28 H 1.09002 * 109.46934 * 29.97498 * 1 2 3 29 29 H 1.09003 * 109.47204 * 149.98127 * 1 2 3 30 30 H 1.07998 * 119.99544 * 359.97438 * 3 2 1 31 31 H 1.07991 * 120.00036 * 179.97438 * 4 3 2 32 32 H 1.07995 * 119.99974 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.99465 * 180.25025 * 6 5 4 34 34 H 1.09002 * 117.49696 * 0.02562 * 10 8 7 35 35 H 1.09002 * 117.50343 * 145.02291 * 10 8 7 36 36 H 1.08999 * 109.46831 * 60.00315 * 18 16 15 37 37 H 1.08994 * 109.47383 * 180.02562 * 18 16 15 38 38 H 1.09000 * 109.47443 * 300.00742 * 18 16 15 39 39 H 0.96996 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0049 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.4421 -2.4665 0.4261 10 6 2.2533 -3.7849 0.2023 11 6 1.6785 -3.4530 -1.1762 12 1 2.3775 -3.1345 -1.9495 13 6 0.5053 -4.2680 -1.6559 14 8 -0.5694 -4.1564 -1.1153 15 8 0.6543 -5.1182 -2.6839 16 6 -0.5186 -5.8703 -3.0928 17 1 -1.1633 -6.0355 -2.2296 18 6 -1.2840 -5.0823 -4.1577 19 6 -0.0905 -7.1985 -3.6615 20 1 0.9582 -7.4520 -3.7111 21 6 -1.0376 -8.0898 -4.1195 22 7 -2.3145 -7.7810 -4.0595 23 14 -0.5069 -9.7360 -4.8251 24 1 0.2359 -10.5012 -3.7918 25 1 -1.7065 -10.5051 -5.2431 26 1 0.3716 -9.5104 -6.0010 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6584 2.1325 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 5.3517 -0.0002 0.0005 33 1 4.1206 -2.1323 0.0090 34 1 3.3304 -3.6848 0.3362 35 1 1.7831 -4.5931 0.7624 36 1 -0.6393 -4.9171 -5.0209 37 1 -2.1647 -5.6466 -4.4643 38 1 -1.5936 -4.1216 -3.7463 39 1 -2.9808 -8.4082 -4.3814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119315594.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:41 Heat of formation + Delta-G solvation = -49.927409 kcal Electronic energy + Delta-G solvation = -20389.242017 eV Core-core repulsion = 17262.196050 eV Total energy + Delta-G solvation = -3127.045967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28838 -39.27617 -36.85857 -35.32768 -33.24919 -32.92841 -30.72622 -29.58379 -26.99887 -25.37102 -24.86197 -23.97896 -21.51772 -21.27870 -20.22226 -19.31296 -17.43855 -16.73002 -16.38282 -15.78766 -15.22786 -15.07110 -14.87524 -14.50437 -14.12016 -13.86218 -13.27105 -13.15755 -12.57344 -12.34069 -12.29848 -12.22360 -11.95364 -11.71464 -11.32606 -11.19430 -11.06076 -10.97446 -10.87938 -10.65803 -10.44563 -10.36055 -10.27611 -9.65848 -9.52468 -8.92073 -8.87476 -8.55468 -8.49035 -6.18344 -4.25438 1.17822 1.27365 2.79810 3.26492 3.29293 3.31354 3.44115 3.68280 4.06778 4.32272 4.60952 4.68906 4.77668 4.84022 4.91435 4.95099 5.14483 5.20170 5.23740 5.44948 5.52728 5.61017 5.61827 5.74050 5.82576 5.94884 6.03094 6.06927 6.13852 6.38587 6.41606 6.59351 6.64327 6.89158 6.89446 6.91499 7.17194 7.59752 7.72714 7.93607 8.14130 8.64381 8.89108 9.40027 10.89102 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.035707 B = 0.003512 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.964328 B = 7970.818240 C = 8343.052137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.050 4.050 8 C -0.091 4.091 9 H 0.129 0.871 10 C -0.143 4.143 11 C -0.147 4.147 12 H 0.131 0.869 13 C 0.482 3.518 14 O -0.521 6.521 15 O -0.351 6.351 16 C 0.215 3.785 17 H 0.047 0.953 18 C -0.155 4.155 19 C -0.522 4.522 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.913 3.087 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.037 0.963 37 H 0.100 0.900 38 H 0.016 0.984 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.332 15.210 8.422 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.143 4.143 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.109 4.109 9 H 0.147 0.853 10 C -0.180 4.180 11 C -0.167 4.167 12 H 0.149 0.851 13 C 0.325 3.675 14 O -0.412 6.412 15 O -0.267 6.267 16 C 0.163 3.837 17 H 0.064 0.936 18 C -0.213 4.213 19 C -0.560 4.560 20 H 0.087 0.913 21 C -0.140 4.140 22 N -0.528 5.528 23 Si 0.739 3.261 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.035 0.965 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.792 15.115 8.483 19.907 hybrid contribution 0.113 -0.821 -0.500 0.968 sum 9.904 14.294 7.983 19.135 Atomic orbital electron populations 1.20894 0.90974 1.03487 1.02545 1.19774 0.96310 0.92308 0.98868 1.21014 0.94262 0.97338 1.01260 1.21113 0.94302 0.98002 1.00619 1.21080 0.99755 0.92419 1.01055 1.21088 0.93544 0.98443 1.00217 1.19002 0.93038 0.92695 1.00314 1.21178 1.01027 0.87957 1.00746 0.85270 1.23160 1.00354 0.98539 0.95923 1.21876 0.99381 1.01941 0.93458 0.85109 1.22212 0.87982 0.78649 0.78664 1.90584 1.28398 1.65230 1.56976 1.86474 1.44912 1.50047 1.45285 1.20651 0.80368 0.88385 0.94299 0.93565 1.22163 1.02536 0.97685 0.98881 1.20998 0.94329 0.98844 1.41822 0.91328 1.24890 0.94665 0.98930 0.95485 1.69889 1.00063 1.36430 1.46375 0.86320 0.77973 0.82295 0.79464 1.19967 1.21023 1.19910 0.91020 0.91579 0.90463 0.86096 0.86255 0.86131 0.85680 0.87249 0.87474 0.94412 0.88206 0.96516 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.33 36.01 0.34 -1.00 16 2 C -0.07 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.12 -1.24 9.30 -39.58 -0.37 -1.61 16 7 C -0.05 -0.62 5.61 -104.63 -0.59 -1.21 16 8 C -0.09 -1.23 4.66 -91.77 -0.43 -1.66 16 9 H 0.13 1.88 6.44 -51.93 -0.33 1.55 16 10 C -0.14 -1.81 9.56 -26.73 -0.26 -2.07 16 11 C -0.15 -2.31 5.94 -91.77 -0.54 -2.86 16 12 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 13 C 0.48 10.28 7.71 36.00 0.28 10.55 16 14 O -0.52 -12.32 15.48 -18.75 -0.29 -12.61 16 15 O -0.35 -8.59 9.86 -39.25 -0.39 -8.98 16 16 C 0.22 5.89 2.56 -27.89 -0.07 5.82 16 17 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 18 C -0.15 -4.01 9.32 37.16 0.35 -3.66 16 19 C -0.52 -14.85 8.90 -34.44 -0.31 -15.16 16 20 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 23 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.08 0.99 6.65 -51.93 -0.35 0.64 16 30 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.15 6.02 -52.48 -0.32 0.84 16 34 H 0.11 1.08 6.17 -51.93 -0.32 0.76 16 35 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -31.19 328.98 -8.95 -40.14 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.35 Total: 2.61 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -3.49 Total: -17.44 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.63 Total: -24.85 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.68 Total: -21.59 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.19 -8.95 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119315594.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.789 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds