Wall clock time and date at job start Mon Mar 30 2020 20:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99763 * 2 1 4 4 H 1.48499 * 109.46736 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47216 * 300.00028 * 3 2 1 6 6 H 1.48502 * 109.46971 * 60.00057 * 3 2 1 7 7 C 1.37872 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00300 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47092 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47261 * 179.97438 * 11 10 9 13 13 O 1.42102 * 108.57681 * 65.50489 * 12 11 10 14 14 O 1.42105 * 108.57828 * 294.48699 * 12 11 10 15 15 C 1.81389 * 101.92397 * 179.97438 * 12 11 10 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.46817 * 64.99991 * 16 15 12 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47233 * 184.99797 * 16 15 12 22 22 H 0.97000 * 119.99896 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47100 * 59.99632 * 9 7 2 24 24 H 1.09004 * 109.46863 * 299.99556 * 9 7 2 25 25 H 1.08990 * 109.47362 * 59.99363 * 10 9 7 26 26 H 1.09004 * 109.46865 * 299.99551 * 10 9 7 27 27 H 1.09005 * 109.47138 * 59.99649 * 11 10 9 28 28 H 1.09004 * 109.46897 * 299.99529 * 11 10 9 29 29 H 1.09008 * 109.47130 * 59.99960 * 15 12 11 30 30 H 1.08997 * 109.47306 * 299.99955 * 15 12 11 31 31 H 1.09002 * 109.47070 * 305.00171 * 16 15 12 32 32 H 1.08996 * 109.47853 * 300.00202 * 17 16 15 33 33 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 34 34 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 36 36 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 37 37 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 38 38 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 40 40 H 1.08992 * 109.47399 * 300.00166 * 21 16 15 41 41 H 1.09004 * 109.46724 * 60.00652 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 16 2.6592 -6.3658 0.0019 13 8 3.3770 -6.3471 1.2282 14 8 3.3787 -6.3470 -1.2234 15 6 1.5538 -7.8040 0.0018 16 6 2.3866 -9.0874 0.0018 17 6 3.1755 -9.1834 1.3092 18 6 4.0079 -10.4672 1.3095 19 6 3.0796 -11.6769 1.1839 20 6 2.2907 -11.5810 -0.1234 21 6 1.4588 -10.2975 -0.1240 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8904 25 1 2.8714 -3.6038 0.8921 26 1 2.8727 -3.6046 -0.8878 27 1 0.8547 -5.0449 -0.8895 28 1 0.8528 -5.0447 0.8906 29 1 0.9253 -7.7791 -0.8885 30 1 0.9246 -7.7787 0.8915 31 1 3.0789 -9.0713 -0.8400 32 1 3.8365 -8.3214 1.3989 33 1 2.4832 -9.1995 2.1510 34 1 4.5696 -10.5358 2.2411 35 1 4.7002 -10.4515 0.4677 36 1 2.3874 -11.6926 2.0257 37 1 3.6728 -12.5915 1.1837 38 1 1.6298 -12.4430 -0.2131 39 1 2.9831 -11.5652 -0.9652 40 1 0.7666 -10.3136 0.7178 41 1 0.8968 -10.2291 -1.0554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170937489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:06 Heat of formation + Delta-G solvation = -117.987360 kcal Electronic energy + Delta-G solvation = -19420.948285 eV Core-core repulsion = 16426.394968 eV Total energy + Delta-G solvation = -2994.553317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.97305 -36.75543 -35.82126 -34.64413 -33.09966 -32.18571 -30.98345 -28.00988 -26.99805 -23.71428 -22.88892 -21.81742 -20.43387 -20.00601 -18.65622 -16.85036 -16.31942 -16.08616 -15.80854 -15.20918 -14.72659 -14.50213 -14.44091 -14.26364 -14.09762 -13.15862 -12.74860 -12.57694 -12.55967 -12.20963 -12.15930 -11.88044 -11.75281 -11.71783 -11.39965 -11.30943 -11.20731 -10.92841 -10.92641 -10.79613 -10.73032 -10.44436 -10.35060 -9.96523 -9.92385 -9.34055 -9.08649 -8.40444 -6.05210 -4.07971 0.16054 2.96458 3.30077 3.37518 3.42789 3.72580 4.09609 4.28880 4.41628 4.43538 4.47935 4.76329 4.89274 4.96387 5.08156 5.15322 5.17619 5.21486 5.28043 5.29171 5.31629 5.43683 5.45586 5.62797 5.79380 5.86088 5.89493 5.90323 5.91912 6.01649 6.15375 6.22155 6.31816 6.48741 6.89815 7.57959 7.67896 7.93239 8.34033 8.98606 9.56797 11.06130 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.052568 B = 0.003227 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.513317 B = 8674.354257 C = 8869.941893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.105 4.105 11 C -0.594 4.594 12 S 2.403 3.597 13 O -0.939 6.939 14 O -0.944 6.944 15 C -0.616 4.616 16 C -0.074 4.074 17 C -0.149 4.149 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.107 4.107 22 H 0.261 0.739 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -23.063 1.007 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.144 4.144 11 C -0.725 4.725 12 S 2.589 3.411 13 O -0.936 6.936 14 O -0.941 6.941 15 C -0.744 4.744 16 C -0.093 4.093 17 C -0.186 4.186 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.145 4.145 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.551 -22.960 1.008 23.123 hybrid contribution -0.739 0.924 -0.023 1.183 sum 1.812 -22.036 0.985 22.132 Atomic orbital electron populations 1.69966 1.06096 1.26656 1.50804 1.25023 0.94890 0.99388 0.95131 0.86498 0.80224 0.83496 0.77606 1.19572 1.20943 1.20945 1.21298 0.93324 0.90862 1.50786 0.92289 1.19091 0.93590 0.90555 0.97692 1.21510 0.99328 0.91341 1.02214 1.30300 1.15706 1.15428 1.11042 1.08489 0.78853 0.78294 0.75493 1.93534 1.68960 1.85677 1.45465 1.93561 1.68987 1.85932 1.45601 1.30467 1.15811 1.16680 1.11419 1.20890 0.96644 0.92126 0.99669 1.22122 0.99934 0.99861 0.96726 1.21515 0.97834 0.94086 1.02201 1.21572 0.98502 0.98033 0.97788 1.21554 0.98917 0.97337 0.98132 1.21541 0.97458 0.93318 1.02220 0.92965 0.96139 0.96129 0.91409 0.91494 0.85501 0.85428 0.85047 0.85014 0.89742 0.89034 0.91019 0.91547 0.91797 0.91951 0.92086 0.91893 0.91801 0.91562 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 10 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 11 C -0.59 -8.92 5.81 37.16 0.22 -8.70 16 12 S 2.40 33.45 4.51 -107.50 -0.48 32.96 16 13 O -0.94 -15.48 15.46 -57.83 -0.89 -16.37 16 14 O -0.94 -16.27 18.10 -57.83 -1.05 -17.32 16 15 C -0.62 -5.85 5.26 37.16 0.20 -5.66 16 16 C -0.07 -0.74 2.19 -90.62 -0.20 -0.93 16 17 C -0.15 -1.57 4.84 -26.73 -0.13 -1.70 16 18 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 19 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 20 C -0.12 -0.90 5.92 -26.76 -0.16 -1.06 16 21 C -0.11 -0.86 5.20 -26.76 -0.14 -1.00 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 28 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.13 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.15 5.41 -51.93 -0.28 0.87 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -34.31 335.99 -10.30 -44.60 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.43 Total: -2.90 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: -1.22 Total: -36.74 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.94 Total: -33.69 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 33.45 SS G_CDS: -0.48 Total: 32.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.31 -10.30 -44.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170937489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.385 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds