Wall clock time and date at job start Mon Mar 30 2020 20:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38251 * 120.00054 * 2 1 4 4 C 1.38209 * 119.99884 * 180.25203 * 3 2 1 5 5 C 1.38258 * 120.00063 * 359.76920 * 4 3 2 6 6 C 1.38213 * 119.99932 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99707 * 179.78656 * 2 1 3 8 8 C 1.50705 * 120.00363 * 0.02562 * 7 2 1 9 9 H 1.08996 * 115.55557 * 334.03715 * 8 7 2 10 10 C 1.52991 * 117.49646 * 188.34811 * 8 7 2 11 11 C 1.53000 * 60.00267 * 252.50957 * 10 8 7 12 12 H 1.08999 * 117.49841 * 107.50602 * 11 10 8 13 13 C 1.50700 * 117.50095 * 252.51679 * 11 10 8 14 14 O 1.20822 * 119.99967 * 68.60692 * 13 11 10 15 15 O 1.34226 * 119.99604 * 248.60511 * 13 11 10 16 16 C 1.45200 * 116.99915 * 180.02562 * 15 13 11 17 17 C 1.52999 * 109.47288 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47525 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99441 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00075 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00481 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 179.73007 * 20 18 17 23 23 H 1.48494 * 109.47225 * 180.27306 * 22 20 18 24 24 H 1.48506 * 109.46866 * 300.27330 * 22 20 18 25 25 H 1.48498 * 109.47306 * 60.26614 * 22 20 18 26 26 H 1.08997 * 109.47363 * 270.20966 * 1 2 3 27 27 H 1.08994 * 109.46992 * 30.21430 * 1 2 3 28 28 H 1.09003 * 109.46946 * 150.21135 * 1 2 3 29 29 H 1.07996 * 120.00216 * 0.04094 * 3 2 1 30 30 H 1.08000 * 119.99890 * 179.78729 * 4 3 2 31 31 H 1.08001 * 119.99934 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99386 * 179.97438 * 6 5 4 33 33 H 1.09001 * 117.49882 * 145.02254 * 10 8 7 34 34 H 1.09000 * 117.52488 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.47559 * 59.99827 * 16 15 13 36 36 H 1.09001 * 109.46716 * 299.99618 * 16 15 13 37 37 H 1.09009 * 109.47378 * 59.99750 * 17 16 15 38 38 H 1.08998 * 109.47458 * 300.00211 * 17 16 15 39 39 H 0.97005 * 119.99656 * 359.72741 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0053 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1971 -0.0014 7 6 2.1981 -1.1970 0.0045 8 6 1.4446 -2.5022 0.0087 9 1 0.4437 -2.4658 0.4387 10 6 2.2542 -3.7845 0.2106 11 6 1.6746 -3.4545 -1.1664 12 1 2.3710 -3.1374 -1.9427 13 6 0.4999 -4.2707 -1.6408 14 8 -0.5728 -4.1587 -1.0962 15 8 0.6454 -5.1220 -2.6683 16 6 -0.5287 -5.8750 -3.0718 17 6 -0.1715 -6.7847 -4.2489 18 6 -1.3899 -7.5667 -4.6674 19 1 -2.3255 -7.4283 -4.1460 20 6 -1.3100 -8.4587 -5.7156 21 7 -0.1708 -8.6269 -6.3508 22 14 -2.8184 -9.4336 -6.2293 23 1 -2.4702 -10.3209 -7.3680 24 1 -3.2887 -10.2567 -5.0862 25 1 -3.8955 -8.4983 -6.6419 26 1 -0.3634 0.0038 1.0276 27 1 -0.3633 0.8880 -0.5171 28 1 -0.3633 -0.8919 -0.5106 29 1 1.6584 2.1326 0.0007 30 1 4.1204 2.1325 -0.0087 31 1 5.3517 -0.0001 -0.0094 32 1 4.1207 -2.1323 -0.0022 33 1 1.7859 -4.5921 0.7733 34 1 3.3319 -3.6848 0.3399 35 1 -1.3172 -5.1852 -3.3724 36 1 -0.8761 -6.4818 -2.2356 37 1 0.6173 -7.4747 -3.9487 38 1 0.1758 -6.1776 -5.0850 39 1 0.6124 -8.1203 -6.0843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172727243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:12 Heat of formation + Delta-G solvation = -59.323317 kcal Electronic energy + Delta-G solvation = -19835.275159 eV Core-core repulsion = 16707.821755 eV Total energy + Delta-G solvation = -3127.453404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60735 -39.63027 -37.17765 -35.80375 -33.69629 -33.07411 -30.91232 -30.06722 -27.15532 -25.64586 -24.25006 -23.84135 -21.66328 -21.39845 -20.66876 -19.90298 -17.86172 -16.88393 -16.44798 -16.37651 -15.99787 -15.40191 -15.12105 -14.47165 -14.04419 -13.83050 -13.66528 -13.38575 -13.29778 -12.73014 -12.48603 -12.38961 -12.19861 -11.92454 -11.66964 -11.43583 -11.34991 -11.15523 -10.92257 -10.71545 -10.67520 -10.29873 -10.16776 -9.92627 -9.78074 -9.01929 -8.77343 -8.69345 -8.41652 -6.46902 -4.17852 1.02716 1.14275 2.32798 2.97060 3.38780 3.41824 3.43107 3.62035 3.81872 4.34541 4.46878 4.50060 4.56240 4.66999 4.70686 4.78792 4.98100 5.08659 5.17320 5.29500 5.31898 5.40454 5.45924 5.46403 5.64190 5.72533 5.80812 5.84192 5.95607 5.96570 5.98353 6.25855 6.26959 6.43302 6.47266 6.75769 6.84013 7.28456 7.32331 7.99365 8.15172 8.33644 8.75547 9.54847 10.94580 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.036917 B = 0.002850 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.283102 B = 9823.708271 C =10049.441774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.055 4.055 8 C -0.086 4.086 9 H 0.130 0.870 10 C -0.141 4.141 11 C -0.152 4.152 12 H 0.135 0.865 13 C 0.486 3.514 14 O -0.516 6.516 15 O -0.354 6.354 16 C 0.082 3.918 17 C 0.012 3.988 18 C -0.608 4.608 19 H 0.053 0.947 20 C 0.019 3.981 21 N -0.907 5.907 22 Si 1.073 2.927 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 18.360 14.821 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.132 4.132 7 C -0.055 4.055 8 C -0.104 4.104 9 H 0.148 0.852 10 C -0.178 4.178 11 C -0.171 4.171 12 H 0.153 0.847 13 C 0.329 3.671 14 O -0.406 6.406 15 O -0.270 6.270 16 C 0.009 3.991 17 C -0.025 4.025 18 C -0.646 4.646 19 H 0.071 0.929 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.901 3.099 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.213 1.213 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.178 17.208 13.860 23.233 hybrid contribution 0.483 1.194 1.046 1.659 sum 7.661 18.402 14.906 24.890 Atomic orbital electron populations 1.20892 0.90984 1.03440 1.02567 1.19768 0.96281 0.92319 0.98838 1.21028 0.94289 0.97372 1.01131 1.21143 0.94305 0.98086 1.00233 1.21099 0.99861 0.92387 1.00881 1.21081 0.93482 0.98495 1.00147 1.18958 0.93046 0.92539 1.00925 1.21185 1.01107 0.88113 0.99967 0.85206 1.23202 1.00700 0.98641 0.95254 1.21870 0.99074 1.02212 0.93912 0.84680 1.22382 0.88438 0.78169 0.78080 1.90619 1.28469 1.65292 1.56231 1.86501 1.43218 1.50731 1.46575 1.23484 0.83833 0.92890 0.98848 1.19300 0.98453 0.93505 0.91286 1.21826 0.96119 1.26619 1.20029 0.92876 1.25907 1.02813 0.96467 0.93326 1.70777 1.01223 1.41123 1.41098 0.83484 0.73923 0.76097 0.76434 1.20584 1.21265 1.21270 0.90970 0.91466 0.90659 0.85994 0.86125 0.86010 0.85675 0.87419 0.86920 0.92084 0.92088 0.96219 0.96230 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.33 36.01 0.34 -0.81 16 2 C -0.07 -0.74 5.88 -104.62 -0.62 -1.36 16 3 C -0.12 -1.08 9.70 -39.59 -0.38 -1.47 16 4 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 5 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 6 C -0.11 -1.07 9.30 -39.59 -0.37 -1.44 16 7 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 8 C -0.09 -0.98 4.65 -91.77 -0.43 -1.40 16 9 H 0.13 1.59 6.45 -51.93 -0.33 1.25 16 10 C -0.14 -1.46 9.56 -26.74 -0.26 -1.72 16 11 C -0.15 -1.99 5.93 -91.77 -0.54 -2.53 16 12 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 13 C 0.49 8.66 7.74 36.01 0.28 8.94 16 14 O -0.52 -10.23 16.01 -18.75 -0.30 -10.53 16 15 O -0.35 -7.27 10.22 -39.25 -0.40 -7.67 16 16 C 0.08 1.87 5.40 37.16 0.20 2.08 16 17 C 0.01 0.31 4.66 -27.88 -0.13 0.18 16 18 C -0.61 -17.51 9.11 -34.44 -0.31 -17.82 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 21 N -0.91 -27.78 13.65 55.43 0.76 -27.02 16 22 Si 1.07 25.19 29.90 -169.99 -5.08 20.11 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16 29 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 0.97 6.02 -52.49 -0.32 0.66 16 33 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.11 0.89 6.18 -51.93 -0.32 0.57 16 35 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 36 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 37 H 0.02 0.53 8.01 -51.92 -0.42 0.12 16 38 H 0.02 0.53 8.00 -51.93 -0.42 0.12 16 39 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -32.52 332.78 -9.16 -41.68 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.45 Total: -0.67 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -3.70 Total: -20.91 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.76 Total: -27.02 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.70 Total: -18.20 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.52 -9.16 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172727243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.641 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds