Wall clock time and date at job start Mon Mar 30 2020 20:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47346 * 2 1 4 4 C 1.38370 * 119.84968 * 270.30349 * 3 2 1 5 5 C 1.37942 * 120.14841 * 180.25657 * 4 3 2 6 6 C 1.39636 * 119.84967 * 359.43914 * 5 4 3 7 7 C 1.47721 * 120.14847 * 180.25957 * 6 5 4 8 8 O 1.21475 * 120.00391 * 354.81681 * 7 6 5 9 9 O 1.34717 * 119.99844 * 174.82118 * 7 6 5 10 10 C 1.45197 * 116.99946 * 184.88387 * 9 7 6 11 11 C 1.52997 * 109.47169 * 183.71309 * 10 9 7 12 12 C 1.50702 * 115.55016 * 306.32853 * 11 10 9 13 13 H 1.08006 * 119.99917 * 144.82410 * 12 11 10 14 14 C 1.37872 * 120.00319 * 324.82141 * 12 11 10 15 15 N 1.31517 * 119.99822 * 345.01540 * 14 12 11 16 16 Si 1.86798 * 120.00461 * 165.01590 * 14 12 11 17 17 H 1.48495 * 109.47258 * 89.99601 * 16 14 12 18 18 H 1.48491 * 109.47248 * 210.00031 * 16 14 12 19 19 H 1.48504 * 109.47009 * 330.00195 * 16 14 12 20 20 C 1.52996 * 117.50053 * 160.65243 * 11 10 9 21 21 C 1.53004 * 117.49617 * 91.99512 * 11 10 9 22 22 C 1.39630 * 119.69775 * 0.27778 * 6 5 4 23 23 C 1.37945 * 119.84889 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47175 * 300.00132 * 1 2 3 25 25 H 1.09000 * 109.47255 * 60.00170 * 1 2 3 26 26 H 1.08999 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47147 * 240.00421 * 2 1 3 28 28 H 1.09000 * 109.47255 * 119.99830 * 2 1 3 29 29 H 1.08000 * 119.92590 * 359.97034 * 4 3 2 30 30 H 1.07999 * 120.07954 * 179.71591 * 5 4 3 31 31 H 1.08999 * 109.47355 * 303.71791 * 10 9 7 32 32 H 1.09004 * 109.46786 * 63.71880 * 10 9 7 33 33 H 0.96991 * 120.00214 * 185.05313 * 15 14 12 34 34 H 1.09004 * 117.50354 * 0.02562 * 20 11 10 35 35 H 1.09004 * 117.49893 * 145.02128 * 20 11 10 36 36 H 1.08998 * 117.49943 * 214.98137 * 21 11 10 37 37 H 1.08998 * 117.49904 * 359.97438 * 21 11 10 38 38 H 1.07998 * 120.07184 * 180.02562 * 22 6 5 39 39 H 1.08003 * 119.92313 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2559 2.0722 -1.2001 5 6 2.7208 3.3709 -1.2073 6 6 2.9545 4.0322 0.0001 7 6 3.4469 5.4249 0.0001 8 8 3.7389 5.9659 -1.0476 9 8 3.5721 6.0951 1.1620 10 6 3.9569 7.4927 1.0787 11 6 4.1378 8.0568 2.4893 12 6 2.9664 7.8708 3.4189 13 1 3.1348 7.6901 4.4704 14 6 1.6797 7.9314 2.9273 15 7 1.4550 8.4351 1.7334 16 14 0.2555 7.2983 3.9570 17 1 -0.2780 8.4016 4.7955 18 1 -0.8165 6.7938 3.0619 19 1 0.7291 6.1960 4.8323 20 6 4.9610 9.3378 2.6376 21 6 5.5399 7.9980 3.0991 22 6 2.7212 3.3708 1.2075 23 6 2.2623 2.0699 1.2002 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0705 1.5612 -2.1333 30 1 2.8993 3.8768 -2.1447 31 1 4.8944 7.5793 0.5296 32 1 3.1790 8.0533 0.5603 33 1 0.5449 8.5455 1.4170 34 1 5.3734 9.7791 1.7302 35 1 4.6555 10.0461 3.4079 36 1 5.6150 7.8253 4.1726 37 1 6.3332 7.5572 2.4954 38 1 2.8995 3.8766 2.1449 39 1 2.0817 1.5571 2.1334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174737146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:14 Heat of formation + Delta-G solvation = -47.008186 kcal Electronic energy + Delta-G solvation = -20778.873702 eV Core-core repulsion = 17651.954322 eV Total energy + Delta-G solvation = -3126.919380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92458 -38.68282 -36.70329 -35.02380 -34.14895 -32.16564 -30.90324 -29.79300 -26.69142 -25.41881 -24.42116 -22.54262 -21.80358 -21.21585 -20.05056 -19.18631 -17.36734 -16.73142 -15.94663 -15.40436 -15.37186 -15.04962 -14.58699 -14.28454 -13.84395 -13.70003 -13.42526 -13.28849 -13.12347 -12.56388 -12.18419 -11.93375 -11.72933 -11.57122 -11.33869 -11.09349 -10.96718 -10.86731 -10.80271 -10.50125 -10.33731 -9.97284 -9.52144 -9.42503 -9.15467 -8.88817 -8.76161 -8.66130 -8.09812 -6.07897 -4.08186 0.94833 1.48390 3.04637 3.26080 3.34715 3.38448 3.51485 4.03045 4.36053 4.62367 4.75731 4.94759 5.05551 5.08267 5.18575 5.33114 5.39526 5.49545 5.51483 5.59396 5.71299 5.85794 5.95214 6.02844 6.05099 6.10784 6.19872 6.37980 6.47535 6.53202 6.58340 6.63858 6.66639 6.82216 6.96674 6.98433 7.25750 7.37425 7.49583 7.88301 8.33824 8.60812 8.85810 9.50465 10.95537 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.005497 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.152622 B = 5092.752010 C = 5964.790201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.060 4.060 4 C -0.135 4.135 5 C -0.058 4.058 6 C -0.117 4.117 7 C 0.498 3.502 8 O -0.526 6.526 9 O -0.320 6.320 10 C 0.116 3.884 11 C 0.049 3.951 12 C -0.486 4.486 13 H 0.063 0.937 14 C 0.078 3.922 15 N -0.880 5.880 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.192 4.192 21 C -0.209 4.209 22 C -0.056 4.056 23 C -0.134 4.134 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.030 0.970 32 H 0.110 0.890 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.144 0.856 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -14.381 -3.515 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.060 4.060 4 C -0.153 4.153 5 C -0.076 4.076 6 C -0.118 4.118 7 C 0.344 3.656 8 O -0.418 6.418 9 O -0.234 6.234 10 C 0.043 3.957 11 C 0.048 3.952 12 C -0.523 4.523 13 H 0.081 0.919 14 C -0.126 4.126 15 N -0.517 5.517 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.230 4.230 21 C -0.247 4.247 22 C -0.074 4.074 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.162 0.838 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.143 -14.200 -3.936 14.736 hybrid contribution -0.688 0.012 0.420 0.806 sum -0.831 -14.188 -3.516 14.641 Atomic orbital electron populations 1.21756 0.94545 1.01658 1.02570 1.20590 0.96321 0.92534 1.02941 1.20128 0.96566 0.96057 0.93282 1.20896 1.02030 0.94664 0.97682 1.21249 0.94891 0.93991 0.97491 1.19347 1.05545 0.92202 0.94687 1.21096 0.74971 0.86784 0.82799 1.90741 1.47729 1.69928 1.33436 1.86541 1.78110 1.27399 1.31339 1.22802 0.98693 0.76072 0.98173 1.18865 0.89433 0.94732 0.92128 1.20373 0.88863 1.49370 0.93647 0.91930 1.24911 0.98808 0.94035 0.94839 1.69823 1.20802 1.42554 1.18501 0.86606 0.81875 0.79625 0.80104 1.20706 1.21016 1.19502 1.22965 1.06996 0.91621 1.01416 1.22967 0.99345 1.02396 0.99960 1.21643 0.93457 0.93930 0.98366 1.21026 1.01497 0.94931 0.97714 0.92318 0.92436 0.92407 0.90931 0.90830 0.85569 0.84749 0.95186 0.87252 0.92673 0.91493 0.89761 0.90292 0.91312 0.83803 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.15 0.37 -0.87 16 2 C -0.09 -0.76 6.05 -27.89 -0.17 -0.93 16 3 C -0.06 -0.72 5.14 -104.52 -0.54 -1.25 16 4 C -0.13 -1.68 9.68 -39.64 -0.38 -2.06 16 5 C -0.06 -0.90 9.60 -39.17 -0.38 -1.27 16 6 C -0.12 -2.12 5.87 -104.98 -0.62 -2.74 16 7 C 0.50 11.06 7.88 34.61 0.27 11.33 16 8 O -0.53 -12.52 16.08 -19.25 -0.31 -12.83 16 9 O -0.32 -7.73 9.13 -40.54 -0.37 -8.10 16 10 C 0.12 2.89 4.66 37.16 0.17 3.07 16 11 C 0.05 1.23 2.10 -155.66 -0.33 0.90 16 12 C -0.49 -13.12 8.75 -34.44 -0.30 -13.42 16 13 H 0.06 1.68 7.86 -52.48 -0.41 1.26 16 14 C 0.08 2.09 5.12 -17.82 -0.09 2.00 16 15 N -0.88 -24.60 10.96 55.43 0.61 -23.99 16 16 Si 0.89 20.91 29.57 -169.99 -5.03 15.89 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.19 -4.33 9.96 -26.70 -0.27 -4.59 16 21 C -0.21 -4.56 9.92 -26.69 -0.26 -4.83 16 22 C -0.06 -0.91 9.62 -39.17 -0.38 -1.29 16 23 C -0.13 -1.77 9.68 -39.64 -0.38 -2.15 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 2.02 7.66 -52.49 -0.40 1.61 16 31 H 0.03 0.71 7.95 -51.93 -0.41 0.30 16 32 H 0.11 3.02 6.12 -51.93 -0.32 2.70 16 33 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.14 2.45 7.62 -52.49 -0.40 2.05 16 39 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -29.78 335.80 -9.04 -38.82 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.73 Total: 3.26 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -3.28 Total: -18.11 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.61 Total: -23.99 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.68 Total: -20.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.78 -9.04 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174737146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.191 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds