Wall clock time and date at job start Mon Mar 30 2020 20:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38394 * 119.85389 * 2 1 4 4 C 1.37922 * 120.15527 * 179.97438 * 3 2 1 5 5 C 1.39648 * 119.84504 * 0.02562 * 4 3 2 6 6 C 1.47721 * 120.14821 * 179.97438 * 5 4 3 7 7 O 1.21473 * 119.99980 * 185.04122 * 6 5 4 8 8 O 1.34710 * 120.00036 * 5.04788 * 6 5 4 9 9 C 1.45209 * 117.00193 * 185.03460 * 8 6 5 10 10 C 1.52997 * 109.47223 * 184.93600 * 9 8 6 11 11 C 1.50703 * 115.55026 * 54.23619 * 10 9 8 12 12 H 1.07995 * 120.00063 * 215.58893 * 11 10 9 13 13 C 1.37881 * 119.99978 * 35.32195 * 11 10 9 14 14 N 1.31520 * 119.99713 * 355.73352 * 13 11 10 15 15 Si 1.86798 * 120.00106 * 175.74243 * 13 11 10 16 16 H 1.48503 * 109.47028 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47305 * 119.99869 * 15 13 11 18 18 H 1.48502 * 109.46716 * 239.99677 * 15 13 11 19 19 C 1.52991 * 117.50103 * 199.90963 * 10 9 8 20 20 C 1.52998 * 117.50038 * 268.57085 * 10 9 8 21 21 C 1.39613 * 119.70379 * 0.24879 * 5 4 3 22 22 C 1.37968 * 119.84226 * 359.51753 * 21 5 4 23 23 C 1.50698 * 119.92103 * 180.23502 * 22 21 5 24 24 H 1.08996 * 109.47348 * 89.99398 * 1 2 3 25 25 H 1.08996 * 109.47553 * 210.00248 * 1 2 3 26 26 H 1.09003 * 109.47269 * 329.99766 * 1 2 3 27 27 H 1.08003 * 119.92191 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.07573 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47129 * 64.93317 * 9 8 6 30 30 H 1.09004 * 109.46191 * 304.93392 * 9 8 6 31 31 H 0.97001 * 119.99482 * 185.00007 * 14 13 11 32 32 H 1.09000 * 117.50369 * 215.00218 * 19 10 9 33 33 H 1.09007 * 117.49811 * 0.02562 * 19 10 9 34 34 H 1.09000 * 117.49339 * 359.97438 * 20 10 9 35 35 H 1.08996 * 117.50044 * 144.97247 * 20 10 9 36 36 H 1.07991 * 120.07782 * 179.72830 * 21 5 4 37 37 H 1.09000 * 109.46981 * 270.22861 * 23 22 21 38 38 H 1.08995 * 109.47314 * 30.22920 * 23 22 21 39 39 H 1.09001 * 109.47131 * 150.23205 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2764 -0.0001 0.0005 6 6 5.7536 -0.0001 0.0005 7 8 6.3609 -1.0480 -0.0919 8 8 6.4272 1.1620 0.1032 9 6 7.8729 1.0987 -0.0164 10 6 8.4676 2.4835 0.2475 11 6 8.0686 3.1244 1.5518 12 1 7.9212 4.1929 1.6056 13 6 7.8864 2.3459 2.6751 14 7 7.9784 1.0367 2.5899 15 14 7.5088 3.1507 4.3180 16 1 7.4595 4.6251 4.1473 17 1 6.1969 2.6656 4.8170 18 1 8.5703 2.8012 5.2960 19 6 9.8814 2.7555 -0.2699 20 6 8.6768 3.4037 -0.9568 21 6 3.5751 -1.2073 -0.0053 22 6 2.1955 -1.1999 -0.0009 23 6 1.4368 -2.5020 -0.0018 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6522 2.1335 -0.0004 28 1 4.1113 2.1449 0.0001 29 1 8.1405 0.7740 -1.0219 30 1 8.2669 0.3894 0.7115 31 1 7.7792 0.4852 3.3626 32 1 10.5231 3.3980 0.3330 33 1 10.3879 1.9480 -0.7987 34 1 8.3912 3.0223 -1.9371 35 1 8.5256 4.4725 -0.8058 36 1 4.1114 -2.1447 -0.0097 37 1 1.2542 -2.8154 -1.0297 38 1 2.0227 -3.2643 0.5118 39 1 0.4848 -2.3682 0.5118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174740000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:19 Heat of formation + Delta-G solvation = -57.561990 kcal Electronic energy + Delta-G solvation = -20896.271838 eV Core-core repulsion = 17768.894810 eV Total energy + Delta-G solvation = -3127.377027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41636 -40.11533 -38.51330 -36.74490 -34.47508 -34.20860 -33.11904 -29.18595 -28.39602 -27.66016 -27.05340 -23.84826 -23.01574 -22.87400 -21.13099 -21.04684 -18.64254 -18.45491 -17.50228 -17.19780 -16.52317 -16.34823 -16.21828 -15.67267 -15.18173 -15.03662 -14.77970 -14.18658 -13.91715 -13.71694 -13.57007 -13.55124 -13.32525 -12.94259 -12.79646 -12.77525 -12.61420 -12.33960 -12.22552 -12.14440 -11.90539 -11.75890 -11.37069 -11.18254 -10.92502 -10.70805 -10.19664 -9.86684 -9.60583 -8.01178 -6.21785 -0.26910 0.35196 1.38427 1.40895 1.52182 1.63558 1.95566 2.40074 2.76412 3.01993 3.53844 3.75293 3.84691 3.92572 4.01219 4.20476 4.23347 4.30062 4.36227 4.54936 4.66953 4.73251 4.77044 4.79757 4.84170 4.89535 4.94003 4.96964 5.00339 5.16763 5.18457 5.31221 5.37172 5.41467 5.44344 5.50372 5.60306 5.79737 5.85274 5.95941 6.30509 6.76077 6.97861 7.42343 8.90455 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.005256 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.864989 B = 5326.033419 C = 5836.536625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.129 4.129 4 C -0.075 4.075 5 C -0.147 4.147 6 C 0.494 3.506 7 O -0.556 6.556 8 O -0.327 6.327 9 C 0.126 3.874 10 C 0.003 3.997 11 C -0.492 4.492 12 H 0.059 0.941 13 C 0.025 3.975 14 N -0.907 5.907 15 Si 0.956 3.044 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.281 1.281 19 C -0.186 4.186 20 C -0.185 4.185 21 C -0.070 4.070 22 C -0.104 4.104 23 C -0.112 4.112 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.129 0.871 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.256 0.744 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 -2.430 -5.489 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.149 4.149 6 C 0.341 3.659 7 O -0.451 6.451 8 O -0.241 6.241 9 C 0.053 3.947 10 C 0.002 3.998 11 C -0.530 4.530 12 H 0.077 0.923 13 C -0.174 4.174 14 N -0.546 5.546 15 Si 0.782 3.218 16 H -0.186 1.186 17 H -0.211 1.211 18 H -0.207 1.207 19 C -0.224 4.224 20 C -0.222 4.222 21 C -0.089 4.089 22 C -0.104 4.104 23 C -0.168 4.168 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.177 0.823 28 H 0.147 0.853 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.013 -2.840 -5.365 17.124 hybrid contribution 0.897 0.144 0.868 1.256 sum -15.115 -2.696 -4.497 15.999 Atomic orbital electron populations 1.21025 0.87684 1.04588 1.04041 1.20491 0.98414 0.91661 0.94796 1.21351 0.92489 0.99620 1.01153 1.21568 0.95635 0.96847 0.95264 1.19307 0.88152 0.96592 1.10805 1.21810 0.90022 0.82037 0.72043 1.90680 1.71411 1.34090 1.48888 1.86480 1.23786 1.32880 1.80935 1.22619 0.75113 0.99792 0.97213 1.19084 0.95274 0.91830 0.93569 1.20716 1.46415 0.93436 0.92405 0.92290 1.25689 0.94394 0.95211 1.02107 1.69977 1.49376 1.04622 1.30577 0.85532 0.77457 0.79108 0.79746 1.18649 1.21053 1.20672 1.23000 0.91863 1.03060 1.04443 1.22963 1.03718 0.98895 0.96652 1.21203 0.94720 0.96291 0.96655 1.20041 0.91864 0.97459 1.01012 1.20924 1.00377 0.91832 1.03706 0.89030 0.89377 0.89992 0.82345 0.85340 0.95614 0.89507 0.93431 0.89576 0.90049 0.89567 0.89441 0.85761 0.89576 0.91591 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.59 71.23 0.68 -0.75 16 2 C -0.05 -1.15 5.89 -19.80 -0.12 -1.27 16 3 C -0.13 -3.19 9.68 22.23 0.22 -2.98 16 4 C -0.07 -2.53 9.62 22.54 0.22 -2.32 16 5 C -0.15 -5.80 5.87 -20.10 -0.12 -5.92 16 6 C 0.49 24.08 7.88 70.33 0.55 24.64 16 7 O -0.56 -29.49 16.06 19.92 0.32 -29.17 16 8 O -0.33 -16.98 8.99 -56.20 -0.51 -17.49 16 9 C 0.13 6.67 4.45 71.98 0.32 6.99 16 10 C 0.00 0.14 2.21 -52.93 -0.12 0.03 16 11 C -0.49 -27.16 8.79 25.60 0.23 -26.94 16 12 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 13 C 0.03 1.41 5.35 84.65 0.45 1.86 16 14 N -0.91 -53.14 10.16 21.45 0.22 -52.92 16 15 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 C -0.19 -8.20 9.96 30.61 0.30 -7.90 16 20 C -0.19 -7.87 9.92 30.62 0.30 -7.57 16 21 C -0.07 -2.34 9.25 22.54 0.21 -2.13 16 22 C -0.10 -2.54 5.87 -19.90 -0.12 -2.66 16 23 C -0.11 -1.82 9.59 71.24 0.68 -1.14 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 0.83 5.93 -2.39 -0.01 0.82 16 26 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 27 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.13 4.57 7.62 -2.91 -0.02 4.55 16 29 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 30 H 0.09 5.17 5.76 -2.38 -0.01 5.15 16 31 H 0.26 14.64 8.32 -92.71 -0.77 13.87 16 32 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 34 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.12 4.23 7.66 -2.92 -0.02 4.21 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 39 H 0.09 1.08 5.93 -2.39 -0.01 1.07 16 Total: -1.00 -68.83 330.19 6.80 -62.03 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 1.04 Total: 19.44 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.70 Total: -28.05 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.22 Total: -52.92 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.19 Total: -46.66 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.83 6.80 -62.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174740000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.469 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds