Wall clock time and date at job start Mon Mar 30 2020 20:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 C 1.53001 * 115.55171 * 34.41557 * 14 12 11 16 16 C 1.50704 * 109.46958 * 325.57902 * 15 14 12 17 17 C 1.38231 * 120.00225 * 269.72913 * 16 15 14 18 18 C 1.38240 * 119.99668 * 179.78631 * 17 16 15 19 19 C 1.38233 * 120.00191 * 0.44517 * 18 17 16 20 20 C 1.38238 * 119.99916 * 359.80641 * 19 18 17 21 21 C 1.38236 * 119.99399 * 89.99804 * 16 15 14 22 22 C 1.53003 * 117.49751 * 248.74230 * 14 12 11 23 23 C 1.53002 * 117.49926 * 180.08232 * 14 12 11 24 24 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 28 28 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 29 29 H 1.08997 * 109.47365 * 85.58457 * 15 14 12 30 30 H 1.09002 * 109.47093 * 205.58197 * 15 14 12 31 31 H 1.07991 * 120.00091 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.99828 * 180.27535 * 18 17 16 33 33 H 1.07993 * 120.00233 * 179.83625 * 19 18 17 34 34 H 1.08000 * 120.00005 * 179.97438 * 20 19 18 35 35 H 1.07996 * 120.00417 * 359.97438 * 21 16 15 36 36 H 1.08998 * 117.49986 * 0.02562 * 22 14 12 37 37 H 1.09006 * 117.49472 * 145.01997 * 22 14 12 38 38 H 1.08995 * 117.50050 * 214.97958 * 23 14 12 39 39 H 1.09003 * 117.49628 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5195 -4.9196 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5664 -7.3880 -0.0019 15 6 0.2530 -7.4588 -0.7835 16 6 -0.4746 -6.1446 -0.6632 17 6 -1.3735 -5.9440 0.3676 18 6 -2.0376 -4.7368 0.4805 19 6 -1.8096 -3.7336 -0.4428 20 6 -0.9146 -3.9361 -1.4767 21 6 -0.2472 -5.1416 -1.5870 22 6 1.6828 -8.2412 1.2628 23 6 2.4549 -8.6336 0.0007 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6042 0.8895 29 1 0.4654 -7.6619 -1.8331 30 1 -0.3687 -8.2568 -0.3777 31 1 -1.5547 -6.7292 1.0865 32 1 -2.7366 -4.5785 1.2884 33 1 -2.3304 -2.7915 -0.3562 34 1 -0.7368 -3.1524 -2.1983 35 1 0.4522 -5.2997 -2.3946 36 1 2.2537 -7.8312 2.0958 37 1 0.8237 -8.8532 1.5378 38 1 2.1036 -9.5035 -0.5541 39 1 3.5343 -8.4818 0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175855708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:41 Heat of formation + Delta-G solvation = -39.104318 kcal Electronic energy + Delta-G solvation = -21707.685546 eV Core-core repulsion = 18581.108903 eV Total energy + Delta-G solvation = -3126.576643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42043 -38.48557 -37.38230 -35.60774 -33.35240 -31.99286 -30.40014 -30.00594 -27.01739 -25.33937 -23.50499 -22.66218 -21.95034 -21.05761 -20.74841 -19.31148 -17.18483 -16.39633 -16.07082 -15.82150 -15.76802 -14.70093 -14.64789 -14.46916 -14.38941 -13.40856 -13.15930 -12.88733 -12.65677 -12.55112 -12.30356 -12.28038 -11.75440 -11.60644 -11.14840 -10.96134 -10.85189 -10.67555 -10.64602 -10.52448 -10.35010 -10.10888 -9.97127 -9.55378 -9.51666 -9.22913 -8.43975 -7.99525 -7.95876 -6.06929 -4.09393 1.99917 2.07225 2.52842 3.23362 3.30618 3.34701 3.39434 3.75638 4.33129 4.41423 4.59168 4.72282 4.89385 5.13652 5.29731 5.34124 5.37839 5.48250 5.56247 5.64884 5.72521 5.77632 5.83465 5.91833 6.01078 6.16486 6.17676 6.20775 6.26800 6.64025 6.66249 6.75047 7.10140 7.11658 7.15380 7.27706 7.64758 7.67155 7.74681 7.93381 8.28191 8.39411 8.95355 9.53616 11.03796 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.005969 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.871313 B = 4689.593469 C = 5643.675394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.322 6.322 12 C 0.487 3.513 13 O -0.524 6.524 14 C -0.132 4.132 15 C -0.036 4.036 16 C -0.082 4.082 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.098 4.098 20 C -0.094 4.094 21 C -0.084 4.084 22 C -0.147 4.147 23 C -0.148 4.148 24 H 0.262 0.738 25 H 0.044 0.956 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -15.872 -0.925 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.006 4.006 11 O -0.237 6.237 12 C 0.330 3.670 13 O -0.415 6.415 14 C -0.133 4.133 15 C -0.073 4.073 16 C -0.082 4.082 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.102 4.102 22 C -0.184 4.184 23 C -0.184 4.184 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.158 -15.665 -0.923 16.007 hybrid contribution 0.842 1.255 0.186 1.523 sum -2.316 -14.410 -0.737 14.614 Atomic orbital electron populations 1.69952 1.05866 1.26774 1.49956 1.24906 0.94884 0.99001 0.95022 0.86623 0.79583 0.82910 0.78702 1.20198 1.21173 1.20239 1.21009 0.93039 0.90527 1.51906 0.92750 1.19352 0.94056 0.88427 0.99270 1.23638 0.96630 0.80101 1.00276 1.86992 1.40200 1.14926 1.81558 1.22310 0.85620 0.86581 0.72481 1.90601 1.15834 1.88300 1.46763 1.21194 0.98783 0.88469 1.04887 1.20084 0.91642 0.95877 0.99689 1.19357 0.97580 0.94952 0.96298 1.20693 0.97772 0.97375 0.97580 1.20943 1.00549 0.93825 0.99014 1.21073 0.98001 0.98204 0.94288 1.20958 0.95667 0.95989 0.98615 1.20701 0.97905 0.93488 0.98116 1.23146 1.03067 1.00853 0.91323 1.23136 0.99241 0.95672 1.00397 0.92870 0.93844 0.95694 0.92878 0.93111 0.90503 0.90234 0.87428 0.87155 0.86306 0.86334 0.87659 0.88252 0.87426 0.87569 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.66 4.60 -27.88 -0.13 0.53 16 10 C 0.07 1.51 5.40 37.16 0.20 1.71 16 11 O -0.32 -6.45 5.15 -39.24 -0.20 -6.65 16 12 C 0.49 8.93 7.34 36.01 0.26 9.19 16 13 O -0.52 -10.94 16.01 -18.75 -0.30 -11.24 16 14 C -0.13 -1.78 2.41 -155.66 -0.38 -2.15 16 15 C -0.04 -0.43 5.53 -27.88 -0.15 -0.58 16 16 C -0.08 -1.22 3.44 -104.62 -0.36 -1.58 16 17 C -0.12 -1.73 9.70 -39.58 -0.38 -2.11 16 18 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 19 C -0.10 -1.76 9.90 -39.58 -0.39 -2.15 16 20 C -0.09 -1.71 6.84 -39.58 -0.27 -1.98 16 21 C -0.08 -1.39 6.88 -39.58 -0.27 -1.66 16 22 C -0.15 -1.60 9.88 -26.69 -0.26 -1.86 16 23 C -0.15 -1.59 9.77 -26.69 -0.26 -1.85 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.04 1.11 4.79 -51.93 -0.25 0.86 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.22 8.13 -51.93 -0.42 0.79 16 28 H 0.05 1.19 8.13 -51.93 -0.42 0.76 16 29 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.08 0.75 7.84 -51.93 -0.41 0.35 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.12 2.22 7.63 -52.49 -0.40 1.82 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.11 0.90 8.05 -51.93 -0.42 0.48 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.11 1.30 7.67 -51.93 -0.40 0.91 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -30.69 324.65 -8.74 -39.43 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.64 Total: 2.12 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -3.20 Total: -20.29 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.74 Total: -24.63 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.50 Total: -17.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.69 -8.74 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175855708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.324 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds