Wall clock time and date at job start Mon Mar 30 2020 20:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 C 1.53001 * 115.55171 * 34.41557 * 14 12 11 16 16 C 1.50704 * 109.46958 * 325.57902 * 15 14 12 17 17 C 1.38231 * 120.00225 * 269.72913 * 16 15 14 18 18 C 1.38240 * 119.99668 * 179.78631 * 17 16 15 19 19 C 1.38233 * 120.00191 * 0.44517 * 18 17 16 20 20 C 1.38238 * 119.99916 * 359.80641 * 19 18 17 21 21 C 1.38236 * 119.99399 * 89.99804 * 16 15 14 22 22 C 1.53003 * 117.49751 * 248.74230 * 14 12 11 23 23 C 1.53002 * 117.49926 * 180.08232 * 14 12 11 24 24 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 28 28 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 29 29 H 1.08997 * 109.47365 * 85.58457 * 15 14 12 30 30 H 1.09002 * 109.47093 * 205.58197 * 15 14 12 31 31 H 1.07991 * 120.00091 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.99828 * 180.27535 * 18 17 16 33 33 H 1.07993 * 120.00233 * 179.83625 * 19 18 17 34 34 H 1.08000 * 120.00005 * 179.97438 * 20 19 18 35 35 H 1.07996 * 120.00417 * 359.97438 * 21 16 15 36 36 H 1.08998 * 117.49986 * 0.02562 * 22 14 12 37 37 H 1.09006 * 117.49472 * 145.01997 * 22 14 12 38 38 H 1.08995 * 117.50050 * 214.97958 * 23 14 12 39 39 H 1.09003 * 117.49628 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5195 -4.9196 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5664 -7.3880 -0.0019 15 6 0.2530 -7.4588 -0.7835 16 6 -0.4746 -6.1446 -0.6632 17 6 -1.3735 -5.9440 0.3676 18 6 -2.0376 -4.7368 0.4805 19 6 -1.8096 -3.7336 -0.4428 20 6 -0.9146 -3.9361 -1.4767 21 6 -0.2472 -5.1416 -1.5870 22 6 1.6828 -8.2412 1.2628 23 6 2.4549 -8.6336 0.0007 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6042 0.8895 29 1 0.4654 -7.6619 -1.8331 30 1 -0.3687 -8.2568 -0.3777 31 1 -1.5547 -6.7292 1.0865 32 1 -2.7366 -4.5785 1.2884 33 1 -2.3304 -2.7915 -0.3562 34 1 -0.7368 -3.1524 -2.1983 35 1 0.4522 -5.2997 -2.3946 36 1 2.2537 -7.8312 2.0958 37 1 0.8237 -8.8532 1.5378 38 1 2.1036 -9.5035 -0.5541 39 1 3.5343 -8.4818 0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175855708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:41 Heat of formation + Delta-G solvation = -53.999874 kcal Electronic energy + Delta-G solvation = -21708.331466 eV Core-core repulsion = 18581.108903 eV Total energy + Delta-G solvation = -3127.222562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80087 -39.79559 -38.61003 -37.10222 -35.42333 -33.23496 -32.14693 -31.51592 -28.18003 -27.19151 -25.02633 -23.57124 -23.16757 -22.73928 -22.24557 -20.66278 -18.79497 -18.01039 -17.73401 -17.43569 -17.05330 -16.52175 -15.92364 -15.72940 -15.48639 -14.94640 -14.73617 -14.35910 -14.11925 -13.91634 -13.77677 -13.37785 -13.29536 -13.06321 -12.65894 -12.54229 -12.53220 -12.36678 -12.05370 -11.82339 -11.74712 -11.54452 -11.40274 -11.31485 -11.12955 -10.93445 -10.56256 -9.38176 -9.23994 -8.22394 -6.33754 0.71316 0.77190 1.15606 1.38359 1.40625 1.48301 1.85415 2.40246 2.78902 3.08329 3.12550 3.56429 3.77134 3.87907 3.98692 4.18852 4.23514 4.26592 4.30897 4.36201 4.46866 4.69212 4.72611 4.76750 4.83277 4.87526 4.97607 5.00021 5.01443 5.22549 5.36812 5.38910 5.40317 5.61827 5.63156 5.80381 5.85183 5.89038 5.94677 6.14598 6.39748 6.77086 6.84291 7.33553 8.87980 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.005969 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.871313 B = 4689.593469 C = 5643.675394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.052 0.948 9 C 0.040 3.960 10 C 0.081 3.919 11 O -0.322 6.322 12 C 0.477 3.523 13 O -0.557 6.557 14 C -0.153 4.153 15 C -0.029 4.029 16 C -0.078 4.078 17 C -0.112 4.112 18 C -0.132 4.132 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.094 4.094 22 C -0.132 4.132 23 C -0.130 4.130 24 H 0.265 0.735 25 H 0.039 0.961 26 H -0.004 1.004 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -18.547 -0.324 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.070 0.930 9 C 0.003 3.997 10 C 0.008 3.992 11 O -0.237 6.237 12 C 0.323 3.677 13 O -0.449 6.449 14 C -0.154 4.154 15 C -0.066 4.066 16 C -0.078 4.078 17 C -0.130 4.130 18 C -0.150 4.150 19 C -0.141 4.141 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.169 4.169 23 C -0.167 4.167 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.214 -18.358 -0.324 18.640 hybrid contribution 0.861 2.018 0.018 2.194 sum -2.353 -16.340 -0.306 16.512 Atomic orbital electron populations 1.70070 1.07226 1.27842 1.50005 1.25749 0.95795 1.02509 0.94283 0.85571 0.78422 0.78498 0.78963 1.19426 1.20266 1.19654 1.21378 0.93222 0.92059 1.52787 0.93002 1.19087 0.93852 0.89128 0.97583 1.23131 0.95540 0.81223 0.99328 1.87021 1.39967 1.14649 1.82018 1.23487 0.85643 0.87583 0.71014 1.90581 1.17369 1.88735 1.48231 1.21293 1.00032 0.85996 1.08109 1.20190 0.90791 0.94872 1.00708 1.19756 0.97073 0.95877 0.95132 1.21116 0.96583 0.97463 0.97841 1.21215 1.01019 0.93993 0.98780 1.21047 0.98941 0.98465 0.95628 1.20863 0.97029 0.96563 0.98790 1.20817 0.97852 0.93493 0.99055 1.23373 1.04054 0.99312 0.90127 1.23294 0.98040 0.94897 1.00475 0.92578 0.94285 0.98583 0.93490 0.94238 0.89287 0.86104 0.83687 0.85420 0.88262 0.88606 0.87492 0.89674 0.83513 0.83685 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.76 13.29 21.45 0.28 -53.48 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.56 -32.23 9.11 25.60 0.23 -32.00 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.04 2.17 4.60 29.85 0.14 2.30 16 10 C 0.08 3.86 5.40 71.98 0.39 4.25 16 11 O -0.32 -13.04 5.15 -51.34 -0.26 -13.31 16 12 C 0.48 17.16 7.34 71.24 0.52 17.68 16 13 O -0.56 -23.33 16.01 21.98 0.35 -22.98 16 14 C -0.15 -3.60 2.41 -52.92 -0.13 -3.73 16 15 C -0.03 -0.56 5.53 29.85 0.17 -0.39 16 16 C -0.08 -2.17 3.44 -19.87 -0.07 -2.23 16 17 C -0.11 -3.04 9.70 22.27 0.22 -2.83 16 18 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 19 C -0.12 -4.68 9.90 22.27 0.22 -4.46 16 20 C -0.11 -4.42 6.84 22.27 0.15 -4.26 16 21 C -0.09 -3.15 6.88 22.27 0.15 -3.00 16 22 C -0.13 -2.26 9.88 30.62 0.30 -1.96 16 23 C -0.13 -2.26 9.77 30.62 0.30 -1.96 16 24 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 25 H 0.04 2.13 4.79 -2.39 -0.01 2.11 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.05 2.25 8.13 -2.39 -0.02 2.23 16 28 H 0.04 1.92 8.13 -2.39 -0.02 1.91 16 29 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 30 H 0.12 1.43 7.84 -2.39 -0.02 1.42 16 31 H 0.15 2.85 8.06 -2.92 -0.02 2.83 16 32 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.10 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.10 3.98 7.63 -2.91 -0.02 3.96 16 35 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.15 1.42 8.05 -2.38 -0.02 1.40 16 38 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.94 7.67 -2.39 -0.02 1.92 16 Total: -1.00 -69.81 324.65 6.71 -63.11 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.03 Total: 15.44 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.28 Total: -35.18 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.28 Total: -53.48 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: 0.09 Total: -36.28 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.81 6.71 -63.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175855708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.106 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds