Wall clock time and date at job start Mon Mar 30 2020 20:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 C 1.53004 * 109.46915 * 124.99991 * 3 2 1 5 5 H 1.08999 * 109.47190 * 304.99540 * 4 3 2 6 6 C 1.50699 * 109.46749 * 184.99854 * 4 3 2 7 7 O 1.20835 * 119.99902 * 240.00153 * 6 4 3 8 8 O 1.34231 * 120.00506 * 60.00395 * 6 4 3 9 9 C 1.45192 * 117.00369 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47078 * 179.97438 * 9 8 6 11 11 C 1.50707 * 109.47125 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99752 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99719 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00527 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99646 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47169 * 59.99704 * 15 13 11 17 17 H 1.48506 * 109.47217 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47118 * 299.99253 * 15 13 11 19 19 C 1.50698 * 109.46908 * 65.00048 * 4 3 2 20 20 C 1.38242 * 120.00255 * 59.72768 * 19 4 3 21 21 C 1.38230 * 119.99928 * 179.80988 * 20 19 4 22 22 C 1.38231 * 119.99864 * 0.39169 * 21 20 19 23 23 C 1.38233 * 120.00637 * 359.85807 * 22 21 20 24 24 C 1.38232 * 119.99997 * 239.99278 * 19 4 3 25 25 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 27 27 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 29 29 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 30 30 H 1.09002 * 109.46771 * 299.99223 * 9 8 6 31 31 H 1.08996 * 109.47441 * 59.99573 * 9 8 6 32 32 H 1.08995 * 109.47094 * 299.99679 * 10 9 8 33 33 H 1.09005 * 109.47042 * 59.99902 * 10 9 8 34 34 H 0.96994 * 120.00253 * 180.02562 * 14 13 11 35 35 H 1.08001 * 119.99282 * 359.97438 * 20 19 4 36 36 H 1.07993 * 119.99822 * 180.23210 * 21 20 19 37 37 H 1.08011 * 119.99735 * 179.83660 * 22 21 20 38 38 H 1.07998 * 120.00610 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.99864 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 1 2.4883 1.1468 2.1061 6 6 3.6991 2.6838 1.2541 7 8 4.9008 2.7720 1.1635 8 8 2.9557 3.7892 1.4194 9 6 3.6625 5.0561 1.4798 10 6 2.6562 6.1929 1.6692 11 6 3.3899 7.5078 1.7326 12 1 4.4662 7.5303 1.6468 13 6 2.6870 8.6819 1.9011 14 7 1.3763 8.6546 2.0060 15 14 3.5964 10.3118 1.9789 16 1 4.3465 10.5210 0.7144 17 1 2.6197 11.4153 2.1628 18 1 4.5456 10.2950 3.1207 19 6 4.0838 0.2671 0.9949 20 6 4.9035 0.2912 -0.1180 21 6 5.8681 -0.6843 -0.2872 22 6 6.0077 -1.6886 0.6523 23 6 5.1847 -1.7158 1.7626 24 6 4.2226 -0.7380 1.9337 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0044 27 1 1.8499 -0.9354 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3586 2.1316 0.0896 30 1 4.3592 5.0437 2.3181 31 1 4.2132 5.2096 0.5518 32 1 1.9598 6.2051 0.8308 33 1 2.1052 6.0396 2.5971 34 1 0.8819 9.4806 2.1242 35 1 4.7919 1.0739 -0.8538 36 1 6.5110 -0.6632 -1.1548 37 1 6.7597 -2.4523 0.5187 38 1 5.2935 -2.5007 2.4964 39 1 3.5797 -0.7591 2.8013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187930443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:57 Heat of formation + Delta-G solvation = -60.608938 kcal Electronic energy + Delta-G solvation = -20240.376354 eV Core-core repulsion = 17112.867202 eV Total energy + Delta-G solvation = -3127.509153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51495 -39.00268 -36.24610 -35.74778 -33.34495 -32.46245 -30.97572 -30.34997 -28.92719 -25.46150 -24.53362 -22.73444 -22.33134 -20.91392 -20.09132 -19.65881 -17.33240 -16.98816 -16.30164 -16.08710 -15.85753 -15.36712 -15.07349 -14.64367 -14.48821 -13.78222 -13.48928 -13.30397 -13.27649 -12.77161 -12.54884 -12.35328 -12.09814 -11.80835 -11.27533 -11.22829 -11.07836 -11.04658 -10.95985 -10.72786 -10.67775 -10.13180 -9.64611 -9.62039 -9.47049 -9.31771 -8.94798 -8.79224 -8.44675 -6.10915 -4.15436 1.23604 1.36394 2.14329 2.58616 3.15278 3.29761 3.33779 3.37605 3.80447 4.38079 4.40088 4.71259 4.86134 4.91993 4.94690 5.04470 5.10587 5.21654 5.25548 5.35938 5.41996 5.49370 5.69746 5.82321 5.84397 5.93874 5.99561 6.08616 6.10198 6.37336 6.44224 6.52399 6.54017 6.63251 6.66775 6.90896 7.00543 7.55059 7.61568 7.86134 8.18694 8.26547 8.89884 9.48995 11.00527 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.003600 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.462619 B = 7774.864567 C = 8595.374319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C -0.085 4.085 4 C -0.037 4.037 5 H 0.115 0.885 6 C 0.458 3.542 7 O -0.508 6.508 8 O -0.355 6.355 9 C 0.075 3.925 10 C 0.025 3.975 11 C -0.528 4.528 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.067 4.067 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.109 4.109 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 -21.574 -3.397 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.168 4.168 3 C -0.122 4.122 4 C -0.057 4.057 5 H 0.132 0.868 6 C 0.300 3.700 7 O -0.396 6.396 8 O -0.271 6.271 9 C 0.003 3.997 10 C -0.012 4.012 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.067 4.067 20 C -0.102 4.102 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.127 4.127 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.446 -21.363 -3.395 21.769 hybrid contribution 0.636 1.008 0.126 1.198 sum 3.082 -20.355 -3.269 20.845 Atomic orbital electron populations 1.23917 0.95872 1.02050 1.00779 1.22831 0.95862 0.97951 1.00133 1.20779 0.97637 0.97095 0.96665 1.19957 0.95272 0.87972 1.02460 0.86754 1.23309 0.86339 0.87103 0.73244 1.90651 1.15901 1.87566 1.45489 1.86515 1.42495 1.16481 1.81618 1.23644 0.96745 0.78479 1.00871 1.19161 0.94035 0.89343 0.98644 1.20947 0.93548 0.90681 1.51395 0.92330 1.24977 0.94897 0.99355 0.94868 1.69961 1.05951 1.27965 1.48978 0.86534 0.79393 0.82599 0.78782 1.20059 1.21106 1.20057 1.19308 0.96711 0.95227 0.95464 1.20952 0.94593 0.97592 0.97112 1.21101 0.98382 0.94969 0.99510 1.21132 0.99339 0.98676 0.94734 1.21057 0.96156 0.98994 0.98026 1.21009 0.98660 0.94620 0.98416 0.88156 0.88535 0.87300 0.90259 0.89124 0.92366 0.92355 0.95353 0.95369 0.92644 0.86247 0.86123 0.86298 0.86129 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 14.32 29.01 0.42 -1.33 16 2 C -0.15 -1.48 9.09 -36.03 -0.33 -1.81 16 3 C -0.08 -0.98 4.99 -27.88 -0.14 -1.12 16 4 C -0.04 -0.49 2.47 -92.92 -0.23 -0.72 16 5 H 0.11 1.33 7.88 -51.93 -0.41 0.92 16 6 C 0.46 8.01 7.13 36.01 0.26 8.27 16 7 O -0.51 -10.12 14.88 -18.76 -0.28 -10.40 16 8 O -0.35 -7.05 10.03 -39.26 -0.39 -7.44 16 9 C 0.08 1.68 5.40 37.16 0.20 1.88 16 10 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 11 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 15 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.07 -0.84 3.64 -104.62 -0.38 -1.22 16 20 C -0.08 -1.07 7.89 -39.58 -0.31 -1.38 16 21 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.11 -1.20 9.67 -39.58 -0.38 -1.59 16 25 H 0.10 0.94 7.84 -52.48 -0.41 0.52 16 26 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 27 H 0.11 1.03 7.77 -52.49 -0.41 0.62 16 28 H 0.08 0.90 7.21 -51.93 -0.37 0.53 16 29 H 0.09 1.11 7.65 -51.93 -0.40 0.71 16 30 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 31 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.12 1.54 7.48 -52.49 -0.39 1.14 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 1.12 7.95 -52.48 -0.42 0.71 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -31.36 338.31 -8.24 -39.60 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.73 Total: -0.61 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.65 Total: -17.04 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.67 Total: -17.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.36 -8.24 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187930443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.010 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds