Wall clock time and date at job start Mon Mar 30 2020 20:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 C 1.53004 * 109.46915 * 124.99991 * 3 2 1 5 5 H 1.08999 * 109.47190 * 304.99540 * 4 3 2 6 6 C 1.50699 * 109.46749 * 184.99854 * 4 3 2 7 7 O 1.20835 * 119.99902 * 240.00153 * 6 4 3 8 8 O 1.34231 * 120.00506 * 60.00395 * 6 4 3 9 9 C 1.45192 * 117.00369 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47078 * 179.97438 * 9 8 6 11 11 C 1.50707 * 109.47125 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99752 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99719 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00527 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99646 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47169 * 59.99704 * 15 13 11 17 17 H 1.48506 * 109.47217 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47118 * 299.99253 * 15 13 11 19 19 C 1.50698 * 109.46908 * 65.00048 * 4 3 2 20 20 C 1.38242 * 120.00255 * 59.72768 * 19 4 3 21 21 C 1.38230 * 119.99928 * 179.80988 * 20 19 4 22 22 C 1.38231 * 119.99864 * 0.39169 * 21 20 19 23 23 C 1.38233 * 120.00637 * 359.85807 * 22 21 20 24 24 C 1.38232 * 119.99997 * 239.99278 * 19 4 3 25 25 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 27 27 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 29 29 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 30 30 H 1.09002 * 109.46771 * 299.99223 * 9 8 6 31 31 H 1.08996 * 109.47441 * 59.99573 * 9 8 6 32 32 H 1.08995 * 109.47094 * 299.99679 * 10 9 8 33 33 H 1.09005 * 109.47042 * 59.99902 * 10 9 8 34 34 H 0.96994 * 120.00253 * 180.02562 * 14 13 11 35 35 H 1.08001 * 119.99282 * 359.97438 * 20 19 4 36 36 H 1.07993 * 119.99822 * 180.23210 * 21 20 19 37 37 H 1.08011 * 119.99735 * 179.83660 * 22 21 20 38 38 H 1.07998 * 120.00610 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.99864 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 1 2.4883 1.1468 2.1061 6 6 3.6991 2.6838 1.2541 7 8 4.9008 2.7720 1.1635 8 8 2.9557 3.7892 1.4194 9 6 3.6625 5.0561 1.4798 10 6 2.6562 6.1929 1.6692 11 6 3.3899 7.5078 1.7326 12 1 4.4662 7.5303 1.6468 13 6 2.6870 8.6819 1.9011 14 7 1.3763 8.6546 2.0060 15 14 3.5964 10.3118 1.9789 16 1 4.3465 10.5210 0.7144 17 1 2.6197 11.4153 2.1628 18 1 4.5456 10.2950 3.1207 19 6 4.0838 0.2671 0.9949 20 6 4.9035 0.2912 -0.1180 21 6 5.8681 -0.6843 -0.2872 22 6 6.0077 -1.6886 0.6523 23 6 5.1847 -1.7158 1.7626 24 6 4.2226 -0.7380 1.9337 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0044 27 1 1.8499 -0.9354 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3586 2.1316 0.0896 30 1 4.3592 5.0437 2.3181 31 1 4.2132 5.2096 0.5518 32 1 1.9598 6.2051 0.8308 33 1 2.1052 6.0396 2.5971 34 1 0.8819 9.4806 2.1242 35 1 4.7919 1.0739 -0.8538 36 1 6.5110 -0.6632 -1.1548 37 1 6.7597 -2.4523 0.5187 38 1 5.2935 -2.5007 2.4964 39 1 3.5797 -0.7591 2.8013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187930443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:57 Heat of formation + Delta-G solvation = -75.564235 kcal Electronic energy + Delta-G solvation = -20241.024865 eV Core-core repulsion = 17112.867202 eV Total energy + Delta-G solvation = -3128.157663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.84021 -40.06940 -37.72413 -36.78183 -35.45290 -33.36141 -32.32851 -31.79158 -29.90027 -27.23214 -25.80336 -23.77343 -23.41387 -22.71252 -21.31397 -20.50339 -18.95715 -18.17478 -17.89787 -17.61897 -17.15818 -16.51973 -16.45973 -15.96383 -15.47161 -15.02690 -14.73088 -14.52417 -14.37010 -14.20111 -13.84782 -13.57013 -13.27162 -13.07600 -12.96929 -12.72311 -12.58539 -12.56731 -12.13306 -11.91682 -11.86056 -11.75133 -11.52041 -11.48779 -11.23077 -10.62098 -10.26657 -9.78179 -9.65633 -8.28144 -6.41720 0.37013 0.53351 1.09454 1.39817 1.42877 1.43745 1.51666 1.78419 2.39215 2.92279 3.06069 3.39748 3.69158 3.92347 4.00528 4.12349 4.18154 4.19326 4.24556 4.26137 4.30839 4.41225 4.61688 4.66862 4.67364 4.80106 4.96094 5.05000 5.12962 5.16733 5.25280 5.44730 5.52202 5.56831 5.63399 5.66378 5.72680 5.76583 5.90266 6.04975 6.11987 6.68764 6.73297 7.28101 8.84215 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.003600 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.462619 B = 7774.864567 C = 8595.374319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C -0.081 4.081 4 C -0.027 4.027 5 H 0.131 0.869 6 C 0.457 3.543 7 O -0.532 6.532 8 O -0.362 6.362 9 C 0.090 3.910 10 C 0.032 3.968 11 C -0.553 4.553 12 H 0.064 0.936 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.973 3.027 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.116 4.116 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.268 0.732 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -22.979 -3.061 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.172 4.172 3 C -0.118 4.118 4 C -0.046 4.046 5 H 0.149 0.851 6 C 0.301 3.699 7 O -0.421 6.421 8 O -0.278 6.278 9 C 0.017 3.983 10 C -0.005 4.005 11 C -0.591 4.591 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.796 3.204 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.134 4.134 25 H 0.114 0.886 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.245 -22.792 -3.065 23.225 hybrid contribution 0.378 1.339 0.009 1.392 sum 3.622 -21.453 -3.055 21.970 Atomic orbital electron populations 1.24085 0.95674 1.02822 0.99320 1.22712 0.95965 0.97127 1.01393 1.20736 0.97186 0.97966 0.95958 1.20042 0.95653 0.85077 1.03794 0.85080 1.24273 0.86216 0.87629 0.71828 1.90631 1.17103 1.87845 1.46565 1.86514 1.42722 1.16405 1.82173 1.23152 0.95398 0.78982 1.00733 1.18966 0.94190 0.90754 0.96583 1.21347 0.94065 0.91833 1.51830 0.91812 1.25953 0.95747 1.03422 0.94043 1.70082 1.07620 1.29276 1.49507 0.85386 0.78211 0.77501 0.79278 1.19067 1.20360 1.19075 1.19322 0.97048 0.95738 0.96256 1.21009 0.95880 0.98207 0.97364 1.21357 0.98150 0.94907 1.00531 1.21506 0.99579 0.98627 0.94132 1.21440 0.95247 0.99116 0.98448 1.21279 0.99239 0.94376 0.98465 0.88590 0.86569 0.86441 0.90648 0.90268 0.92445 0.92354 0.97420 0.97503 0.92276 0.87671 0.84687 0.83601 0.83355 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 14.32 67.78 0.97 -2.12 16 2 C -0.15 -2.88 9.09 25.64 0.23 -2.65 16 3 C -0.08 -1.89 4.99 29.85 0.15 -1.74 16 4 C -0.03 -0.69 2.47 -12.29 -0.03 -0.72 16 5 H 0.13 2.92 7.88 -2.39 -0.02 2.90 16 6 C 0.46 16.26 7.13 71.24 0.51 16.77 16 7 O -0.53 -21.59 14.88 21.94 0.33 -21.26 16 8 O -0.36 -14.77 10.03 -51.43 -0.52 -15.29 16 9 C 0.09 4.17 5.40 71.98 0.39 4.56 16 10 C 0.03 1.75 5.35 29.85 0.16 1.91 16 11 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 12 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 13 C 0.01 0.43 5.46 84.65 0.46 0.89 16 14 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 15 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 19 C -0.08 -2.04 3.64 -19.87 -0.07 -2.11 16 20 C -0.11 -2.69 7.89 22.27 0.18 -2.51 16 21 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 22 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 23 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.12 -2.32 9.67 22.27 0.22 -2.10 16 25 H 0.10 1.71 7.84 -2.91 -0.02 1.69 16 26 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 27 H 0.12 2.02 7.77 -2.91 -0.02 2.00 16 28 H 0.08 1.78 7.21 -2.39 -0.02 1.76 16 29 H 0.08 2.00 7.65 -2.39 -0.02 1.98 16 30 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 31 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.11 2.84 7.48 -2.91 -0.02 2.82 16 36 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.15 1.70 8.06 -2.90 -0.02 1.67 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.14 2.21 7.95 -2.91 -0.02 2.19 16 Total: -1.00 -67.73 338.31 7.20 -60.53 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.01 Total: 13.12 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.06 Total: -27.59 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.28 Total: -55.34 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.19 Total: -36.55 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.73 7.20 -60.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187930443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.036 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds