Wall clock time and date at job start Mon Mar 30 2020 20:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00127 * 2 1 4 4 C 1.53004 * 109.46751 * 125.00257 * 3 2 1 5 5 H 1.09001 * 109.47204 * 304.99578 * 4 3 2 6 6 C 1.50695 * 109.47319 * 65.00390 * 4 3 2 7 7 O 1.20825 * 120.00224 * 119.99559 * 6 4 3 8 8 O 1.34232 * 119.99727 * 299.99634 * 6 4 3 9 9 C 1.45206 * 116.99878 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47129 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47109 * 90.00314 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00053 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99884 * 15 13 11 19 19 C 1.50703 * 109.46661 * 184.99898 * 4 3 2 20 20 C 1.38234 * 120.00380 * 299.72735 * 19 4 3 21 21 C 1.38235 * 120.00293 * 179.78648 * 20 19 4 22 22 C 1.38233 * 119.99540 * 0.44404 * 21 20 19 23 23 C 1.38231 * 120.00396 * 359.80801 * 22 21 20 24 24 C 1.38234 * 119.99939 * 119.99883 * 19 4 3 25 25 H 1.07999 * 120.00035 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00319 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00035 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.46965 * 5.00149 * 3 2 1 29 29 H 1.08998 * 109.46819 * 245.00047 * 3 2 1 30 30 H 1.09004 * 109.47122 * 299.99817 * 9 8 6 31 31 H 1.09000 * 109.47070 * 59.99842 * 9 8 6 32 32 H 1.09004 * 109.46930 * 299.99887 * 10 9 8 33 33 H 1.09004 * 109.47059 * 59.99488 * 10 9 8 34 34 H 0.96991 * 120.00238 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.99636 * 359.97438 * 20 19 4 36 36 H 1.07996 * 120.00440 * 180.27159 * 21 20 19 37 37 H 1.08000 * 119.99521 * 179.83375 * 22 21 20 38 38 H 1.08005 * 120.00387 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.99785 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4883 1.1468 2.1061 6 6 4.0839 0.2671 0.9949 7 8 5.2508 0.5730 0.9276 8 8 3.7216 -1.0221 0.9033 9 6 4.7851 -1.9946 0.7247 10 6 4.1834 -3.3988 0.6413 11 6 5.2871 -4.4079 0.4553 12 1 6.3149 -4.0805 0.4024 13 6 4.9847 -5.7494 0.3538 14 7 3.7332 -6.1481 0.4187 15 14 6.3528 -7.0003 0.1240 16 1 6.8291 -7.4626 1.4523 17 1 5.8387 -8.1597 -0.6486 18 1 7.4781 -6.3731 -0.6146 19 6 3.6991 2.6839 1.2541 20 6 4.4587 3.1386 0.1925 21 6 5.0642 4.3796 0.2572 22 6 4.9176 5.1620 1.3873 23 6 4.1623 4.7051 2.4511 24 6 3.5533 3.4660 2.3846 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 5.3262 -1.7763 -0.1960 31 1 5.4709 -1.9424 1.5703 32 1 3.6420 -3.6174 1.5618 33 1 3.4977 -3.4506 -0.2045 34 1 3.5204 -7.0917 0.3470 35 1 4.5766 2.5255 -0.6888 36 1 5.6540 4.7367 -0.5740 37 1 5.3928 6.1304 1.4389 38 1 4.0481 5.3162 3.3343 39 1 2.9631 3.1090 3.2157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187930475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:00 Heat of formation + Delta-G solvation = -59.742992 kcal Electronic energy + Delta-G solvation = -20390.959453 eV Core-core repulsion = 17263.487850 eV Total energy + Delta-G solvation = -3127.471603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52702 -38.98295 -36.16893 -35.72785 -33.33564 -32.47960 -30.98133 -30.33365 -28.80362 -25.40585 -24.51112 -22.71036 -22.34965 -20.93441 -20.11077 -19.51682 -17.33838 -16.93393 -16.47487 -16.09273 -15.76656 -15.23422 -14.86506 -14.64562 -14.48670 -13.68824 -13.50968 -13.29282 -13.20675 -12.79162 -12.65864 -12.36355 -12.05290 -11.71307 -11.37746 -11.20004 -11.07917 -10.98229 -10.77698 -10.66898 -10.65361 -10.11756 -9.63470 -9.61641 -9.30488 -9.28026 -8.95903 -8.79428 -8.45273 -6.11451 -4.15690 1.21488 1.35267 2.37309 2.63252 3.14861 3.27887 3.34149 3.38605 3.79429 4.38075 4.38917 4.70348 4.88538 4.97333 5.02103 5.04777 5.19255 5.25222 5.26772 5.41273 5.45037 5.49588 5.71739 5.83956 5.87560 5.96611 6.08713 6.10941 6.15873 6.35933 6.43014 6.51540 6.63234 6.86561 6.89840 6.91944 7.03690 7.54665 7.61001 7.85826 8.18998 8.27025 8.89794 9.48803 10.99988 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023723 B = 0.003798 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.025699 B = 7370.754808 C = 8204.751138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.078 4.078 4 C -0.039 4.039 5 H 0.114 0.886 6 C 0.460 3.540 7 O -0.508 6.508 8 O -0.351 6.351 9 C 0.073 3.927 10 C 0.026 3.974 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.072 4.072 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.108 4.108 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 20.536 1.148 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.174 4.174 3 C -0.116 4.116 4 C -0.058 4.058 5 H 0.132 0.868 6 C 0.302 3.698 7 O -0.397 6.397 8 O -0.267 6.267 9 C 0.000 4.000 10 C -0.011 4.011 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.072 4.072 20 C -0.102 4.102 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.126 4.126 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.153 0.847 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.048 20.411 1.110 20.838 hybrid contribution 0.911 -0.841 -0.058 1.242 sum -3.137 19.570 1.051 19.847 Atomic orbital electron populations 1.23806 0.95826 1.01544 1.02146 1.23341 0.96266 0.99069 0.98677 1.20723 0.97197 0.96995 0.96649 1.20001 0.94238 0.89031 1.02533 0.86776 1.23291 0.89207 0.84050 0.73265 1.90647 1.20296 1.83039 1.45720 1.86549 1.42423 1.16118 1.81640 1.23653 0.87919 0.87957 1.00460 1.19160 0.97121 0.86139 0.98720 1.20983 0.93036 0.91244 1.51218 0.92307 1.24977 0.95714 0.98490 0.94927 1.69966 1.17266 1.15996 1.49590 0.86483 0.81886 0.80715 0.78304 1.20479 1.21042 1.19721 1.19339 0.98750 0.94169 0.94985 1.20969 0.95484 0.95371 0.98332 1.21115 0.99951 0.94598 0.98359 1.21143 0.98983 0.99783 0.93859 1.21065 0.98251 0.96199 0.98747 1.21018 0.99966 0.94646 0.96995 0.89179 0.88238 0.84749 0.90046 0.90395 0.92387 0.92409 0.95389 0.95390 0.92714 0.86185 0.86068 0.86245 0.86066 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 14.32 29.02 0.42 -1.87 16 2 C -0.16 -2.06 8.90 -36.02 -0.32 -2.38 16 3 C -0.08 -0.91 4.87 -27.88 -0.14 -1.05 16 4 C -0.04 -0.51 2.49 -92.92 -0.23 -0.74 16 5 H 0.11 1.32 7.88 -51.93 -0.41 0.92 16 6 C 0.46 7.98 7.10 36.00 0.26 8.23 16 7 O -0.51 -10.10 14.84 -18.75 -0.28 -10.38 16 8 O -0.35 -6.79 7.53 -39.26 -0.30 -7.09 16 9 C 0.07 1.60 5.40 37.16 0.20 1.80 16 10 C 0.03 0.67 5.35 -27.88 -0.15 0.52 16 11 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.07 -0.91 4.40 -104.62 -0.46 -1.37 16 20 C -0.08 -1.06 7.98 -39.58 -0.32 -1.38 16 21 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 23 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 24 C -0.11 -1.20 9.67 -39.58 -0.38 -1.58 16 25 H 0.09 0.87 7.84 -52.49 -0.41 0.46 16 26 H 0.10 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.13 2.16 5.88 -52.49 -0.31 1.85 16 28 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 29 H 0.08 0.91 7.59 -51.93 -0.39 0.52 16 30 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 31 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 1.54 7.58 -52.49 -0.40 1.14 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.12 1.11 7.95 -52.49 -0.42 0.70 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -31.12 335.04 -8.20 -39.32 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.67 Total: 0.47 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.73 Total: -18.26 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.57 Total: -17.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.12 -8.20 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187930475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.422 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds