Wall clock time and date at job start Mon Mar 30 2020 20:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00127 * 2 1 4 4 C 1.53004 * 109.46751 * 125.00257 * 3 2 1 5 5 H 1.09001 * 109.47204 * 304.99578 * 4 3 2 6 6 C 1.50695 * 109.47319 * 65.00390 * 4 3 2 7 7 O 1.20825 * 120.00224 * 119.99559 * 6 4 3 8 8 O 1.34232 * 119.99727 * 299.99634 * 6 4 3 9 9 C 1.45206 * 116.99878 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47129 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47109 * 90.00314 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00053 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99884 * 15 13 11 19 19 C 1.50703 * 109.46661 * 184.99898 * 4 3 2 20 20 C 1.38234 * 120.00380 * 299.72735 * 19 4 3 21 21 C 1.38235 * 120.00293 * 179.78648 * 20 19 4 22 22 C 1.38233 * 119.99540 * 0.44404 * 21 20 19 23 23 C 1.38231 * 120.00396 * 359.80801 * 22 21 20 24 24 C 1.38234 * 119.99939 * 119.99883 * 19 4 3 25 25 H 1.07999 * 120.00035 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00319 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00035 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.46965 * 5.00149 * 3 2 1 29 29 H 1.08998 * 109.46819 * 245.00047 * 3 2 1 30 30 H 1.09004 * 109.47122 * 299.99817 * 9 8 6 31 31 H 1.09000 * 109.47070 * 59.99842 * 9 8 6 32 32 H 1.09004 * 109.46930 * 299.99887 * 10 9 8 33 33 H 1.09004 * 109.47059 * 59.99488 * 10 9 8 34 34 H 0.96991 * 120.00238 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.99636 * 359.97438 * 20 19 4 36 36 H 1.07996 * 120.00440 * 180.27159 * 21 20 19 37 37 H 1.08000 * 119.99521 * 179.83375 * 22 21 20 38 38 H 1.08005 * 120.00387 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.99785 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4883 1.1468 2.1061 6 6 4.0839 0.2671 0.9949 7 8 5.2508 0.5730 0.9276 8 8 3.7216 -1.0221 0.9033 9 6 4.7851 -1.9946 0.7247 10 6 4.1834 -3.3988 0.6413 11 6 5.2871 -4.4079 0.4553 12 1 6.3149 -4.0805 0.4024 13 6 4.9847 -5.7494 0.3538 14 7 3.7332 -6.1481 0.4187 15 14 6.3528 -7.0003 0.1240 16 1 6.8291 -7.4626 1.4523 17 1 5.8387 -8.1597 -0.6486 18 1 7.4781 -6.3731 -0.6146 19 6 3.6991 2.6839 1.2541 20 6 4.4587 3.1386 0.1925 21 6 5.0642 4.3796 0.2572 22 6 4.9176 5.1620 1.3873 23 6 4.1623 4.7051 2.4511 24 6 3.5533 3.4660 2.3846 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 5.3262 -1.7763 -0.1960 31 1 5.4709 -1.9424 1.5703 32 1 3.6420 -3.6174 1.5618 33 1 3.4977 -3.4506 -0.2045 34 1 3.5204 -7.0917 0.3470 35 1 4.5766 2.5255 -0.6888 36 1 5.6540 4.7367 -0.5740 37 1 5.3928 6.1304 1.4389 38 1 4.0481 5.3162 3.3343 39 1 2.9631 3.1090 3.2157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187930475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:59 Heat of formation + Delta-G solvation = -74.610335 kcal Electronic energy + Delta-G solvation = -20391.604149 eV Core-core repulsion = 17263.487850 eV Total energy + Delta-G solvation = -3128.116299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84520 -40.01508 -37.69277 -36.79216 -35.43950 -33.44547 -32.32849 -31.78884 -29.78318 -27.22563 -25.74637 -23.77749 -23.45477 -22.68175 -21.26630 -20.61860 -18.94226 -18.17717 -17.80584 -17.77474 -17.10657 -16.51774 -16.28176 -15.89175 -15.52180 -15.02081 -14.68748 -14.55222 -14.37062 -14.20891 -13.79989 -13.61525 -13.28091 -13.16552 -12.94470 -12.69447 -12.59116 -12.53768 -12.10216 -11.91604 -11.82063 -11.68430 -11.51312 -11.42290 -11.22827 -10.62643 -10.25855 -9.78492 -9.65909 -8.28518 -6.41741 0.35650 0.53050 1.13375 1.39458 1.41323 1.46312 1.52535 1.79719 2.38776 2.91956 3.05754 3.39891 3.69145 3.94941 4.00315 4.16492 4.18595 4.20254 4.24164 4.29763 4.31161 4.47092 4.64112 4.65257 4.68255 4.81915 4.94079 5.04944 5.15389 5.16703 5.27147 5.45275 5.53528 5.56401 5.63086 5.65416 5.73115 5.86085 5.95437 6.05362 6.11736 6.70081 6.75397 7.28006 8.83938 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023723 B = 0.003798 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.025699 B = 7370.754808 C = 8204.751138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 C -0.068 4.068 4 C -0.028 4.028 5 H 0.132 0.868 6 C 0.457 3.543 7 O -0.535 6.535 8 O -0.353 6.353 9 C 0.088 3.912 10 C 0.035 3.965 11 C -0.552 4.552 12 H 0.062 0.938 13 C 0.008 3.992 14 N -0.925 5.925 15 Si 0.972 3.028 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.090 4.090 20 C -0.106 4.106 21 C -0.133 4.133 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.115 4.115 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.268 0.732 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 22.276 1.768 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.198 4.198 3 C -0.105 4.105 4 C -0.047 4.047 5 H 0.150 0.850 6 C 0.301 3.699 7 O -0.425 6.425 8 O -0.270 6.270 9 C 0.015 3.985 10 C -0.003 4.003 11 C -0.590 4.590 12 H 0.081 0.919 13 C -0.192 4.192 14 N -0.564 5.564 15 Si 0.796 3.204 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.090 4.090 20 C -0.124 4.124 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.133 4.133 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.988 22.171 1.731 22.593 hybrid contribution 0.829 -1.294 -0.240 1.555 sum -3.159 20.878 1.491 21.168 Atomic orbital electron populations 1.23995 0.95189 1.02756 0.99501 1.23185 0.96926 0.98433 1.01229 1.20688 0.97101 0.96974 0.95773 1.20100 0.93091 0.87649 1.03874 0.85033 1.24295 0.90086 0.83630 0.71895 1.90625 1.21785 1.83110 1.46934 1.86589 1.41248 1.17087 1.82046 1.23139 0.88029 0.87115 1.00217 1.18943 0.96321 0.88420 0.96579 1.21373 0.93633 0.92288 1.51664 0.91934 1.25943 0.98363 1.00640 0.94204 1.70085 1.19451 1.16762 1.50124 0.85343 0.78633 0.77813 0.78642 1.19516 1.20275 1.18835 1.19374 0.99771 0.94004 0.95896 1.21034 0.96748 0.96302 0.98303 1.21375 0.99936 0.94183 0.99545 1.21524 0.98413 1.00629 0.93194 1.21458 0.97272 0.95975 0.99655 1.21310 1.00169 0.95004 0.96814 0.86258 0.88634 0.88375 0.87107 0.90998 0.92576 0.92621 0.97570 0.97478 0.92309 0.87581 0.84619 0.83545 0.83274 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 14.32 67.79 0.97 -2.94 16 2 C -0.18 -4.76 8.90 25.65 0.23 -4.53 16 3 C -0.07 -1.54 4.87 29.85 0.15 -1.39 16 4 C -0.03 -0.72 2.49 -12.29 -0.03 -0.75 16 5 H 0.13 2.87 7.88 -2.39 -0.02 2.85 16 6 C 0.46 16.22 7.10 71.23 0.51 16.73 16 7 O -0.53 -21.75 14.84 21.97 0.33 -21.43 16 8 O -0.35 -14.27 7.53 -51.44 -0.39 -14.65 16 9 C 0.09 4.06 5.40 71.98 0.39 4.45 16 10 C 0.03 1.87 5.35 29.85 0.16 2.03 16 11 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.01 0.44 5.46 84.66 0.46 0.90 16 14 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 15 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 19 C -0.09 -2.18 4.40 -19.87 -0.09 -2.27 16 20 C -0.11 -2.65 7.98 22.27 0.18 -2.47 16 21 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 22 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 23 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.12 -2.28 9.67 22.27 0.22 -2.06 16 25 H 0.12 1.94 7.84 -2.91 -0.02 1.91 16 26 H 0.10 2.16 8.06 -2.91 -0.02 2.13 16 27 H 0.10 3.35 5.88 -2.91 -0.02 3.33 16 28 H 0.11 1.86 7.79 -2.39 -0.02 1.85 16 29 H 0.07 1.69 7.59 -2.39 -0.02 1.67 16 30 H 0.06 2.57 8.13 -2.38 -0.02 2.55 16 31 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 32 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.11 2.84 7.58 -2.91 -0.02 2.82 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.14 2.16 7.95 -2.91 -0.02 2.14 16 Total: -1.00 -68.35 335.04 7.31 -61.05 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.02 Total: 14.38 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.04 Total: -30.04 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.06 Total: -36.08 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.35 7.31 -61.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187930475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.562 kcal (2) G-P(sol) polarization free energy of solvation -68.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds