Wall clock time and date at job start Mon Mar 30 2020 20:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48496 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47417 * 300.00313 * 3 2 1 6 6 H 1.48503 * 109.47002 * 60.00146 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99935 * 197.85623 * 7 2 1 9 9 C 1.41394 * 119.99918 * 17.85315 * 7 2 1 10 10 C 1.40719 * 120.24460 * 204.37696 * 9 7 2 11 11 C 1.37614 * 119.74658 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24963 * 0.03303 * 11 10 9 13 13 C 1.50697 * 119.75259 * 179.97438 * 12 11 10 14 14 O 1.45201 * 109.47259 * 89.99945 * 13 12 11 15 15 C 1.34226 * 116.99907 * 180.02562 * 14 13 12 16 16 O 1.20825 * 120.00569 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99600 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47054 * 180.02562 * 17 15 14 19 19 C 1.53784 * 113.61552 * 274.14223 * 18 17 15 20 20 C 1.53954 * 87.01829 * 220.04509 * 19 18 17 21 21 C 1.53778 * 113.61773 * 176.53038 * 18 17 15 22 22 C 1.38642 * 120.50139 * 0.24450 * 12 11 10 23 23 C 1.37625 * 120.24249 * 359.44934 * 22 12 11 24 24 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.12523 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.87932 * 179.97438 * 11 10 9 27 27 H 1.08999 * 109.47221 * 210.00119 * 13 12 11 28 28 H 1.08998 * 109.46871 * 329.99744 * 13 12 11 29 29 H 1.08998 * 109.47157 * 299.99898 * 17 15 14 30 30 H 1.08997 * 109.46942 * 60.00330 * 17 15 14 31 31 H 1.09000 * 112.84857 * 45.33119 * 18 17 15 32 32 H 1.09003 * 113.61155 * 334.56207 * 19 18 17 33 33 H 1.08995 * 113.61851 * 105.47084 * 19 18 17 34 34 H 1.08997 * 113.54198 * 270.80709 * 20 19 18 35 35 H 1.09000 * 113.66820 * 139.92595 * 20 19 18 36 36 H 1.08998 * 113.61907 * 254.52986 * 21 18 17 37 37 H 1.09002 * 113.61169 * 25.34844 * 21 18 17 38 38 H 1.07993 * 119.87779 * 179.70737 * 22 12 11 39 39 H 1.07998 * 120.12464 * 180.27581 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8834 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2863 9 6 1.3521 -2.4068 -0.3765 10 6 1.8259 -3.6499 0.0821 11 6 1.1801 -4.8065 -0.2906 12 6 0.0670 -4.7502 -1.1151 13 6 -0.6314 -6.0237 -1.5167 14 8 -1.6653 -6.3356 -0.5461 15 6 -2.3856 -7.4480 -0.7593 16 8 -2.1594 -8.1386 -1.7246 17 6 -3.4757 -7.8362 0.2062 18 6 -4.1356 -9.1338 -0.2647 19 6 -5.2668 -8.9152 -1.2833 20 6 -6.0371 -10.0251 -0.5451 21 6 -5.2096 -9.6640 0.6998 22 6 -0.4053 -3.5314 -1.5775 23 6 0.2212 -2.3616 -1.2125 24 1 -0.4851 0.8400 0.0004 25 1 2.6932 -3.6961 0.7241 26 1 1.5421 -5.7617 0.0598 27 1 -1.0832 -5.8957 -2.5004 28 1 0.0915 -6.8388 -1.5522 29 1 -3.0471 -7.9859 1.1971 30 1 -4.2223 -7.0433 0.2491 31 1 -3.4124 -9.8896 -0.5710 32 1 -5.7369 -7.9345 -1.2100 33 1 -4.9917 -9.1786 -2.3046 34 1 -5.8347 -11.0249 -0.9291 35 1 -7.1021 -9.8202 -0.4359 36 1 -4.8884 -10.5310 1.2771 37 1 -5.6630 -8.8886 1.3173 38 1 -1.2704 -3.4996 -2.2232 39 1 -0.1510 -1.4130 -1.5703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271895419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:20 Heat of formation + Delta-G solvation = -67.729102 kcal Electronic energy + Delta-G solvation = -19850.033920 eV Core-core repulsion = 16722.216014 eV Total energy + Delta-G solvation = -3127.817906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26500 -38.72251 -37.61705 -35.92802 -33.86387 -31.21337 -30.41624 -29.36403 -27.18378 -25.77263 -24.45677 -23.36775 -21.08923 -20.58141 -20.03048 -19.51523 -17.40017 -17.24176 -16.41588 -16.14310 -15.42628 -15.31166 -14.71422 -14.24491 -14.00026 -13.80600 -13.22724 -12.81406 -12.61942 -12.42024 -12.23958 -12.03409 -11.87994 -11.73693 -11.59550 -11.18766 -10.98608 -10.84770 -10.81843 -10.52231 -10.43782 -10.36705 -10.15635 -10.07374 -9.67363 -9.47165 -9.22394 -7.56196 -7.44892 -6.86670 -4.46335 2.47133 2.52617 2.95801 3.00548 3.03205 3.08103 3.42807 3.85732 4.41157 4.45338 4.51551 4.59795 4.70025 5.05901 5.26069 5.38316 5.47758 5.55154 5.57450 5.62807 5.68710 5.70410 5.73557 5.77301 5.90788 6.06284 6.12993 6.25701 6.31571 6.34020 6.86638 6.94313 6.97684 7.18608 7.26751 7.51862 7.74362 7.96024 8.01351 8.14890 8.19358 8.54154 8.78762 8.86952 10.07147 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.039031 B = 0.002944 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.198965 B = 9509.924054 C = 9804.616442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.064 4.064 12 C -0.235 4.235 13 C 0.136 3.864 14 O -0.352 6.352 15 C 0.455 3.545 16 O -0.522 6.522 17 C -0.108 4.108 18 C -0.100 4.100 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.076 4.076 23 C -0.170 4.170 24 H 0.282 0.718 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 -11.377 0.639 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.083 4.083 12 C -0.237 4.237 13 C 0.064 3.936 14 O -0.269 6.269 15 C 0.298 3.702 16 O -0.411 6.411 17 C -0.146 4.146 18 C -0.118 4.118 19 C -0.174 4.174 20 C -0.180 4.180 21 C -0.174 4.174 22 C -0.095 4.095 23 C -0.190 4.190 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.720 -11.381 0.352 14.342 hybrid contribution 0.382 0.797 -0.031 0.884 sum -8.339 -10.585 0.321 13.479 Atomic orbital electron populations 1.69833 1.07679 1.29412 1.34054 1.25973 0.94758 1.01545 0.92140 0.86238 0.81026 0.80709 0.78664 1.18293 1.19592 1.19878 1.19703 0.98246 0.91230 1.39303 0.90137 1.17690 0.90810 0.92090 0.87914 1.20965 1.04124 0.92688 1.07183 1.20388 0.95140 0.96639 0.96096 1.18699 1.01246 0.92018 1.11701 1.21700 0.86590 0.95862 0.89459 1.86725 1.46038 1.41168 1.52932 1.23697 0.82001 0.78988 0.85499 1.90604 1.67722 1.52516 1.30307 1.21446 0.95679 0.98902 0.98582 1.22427 0.95953 0.96255 0.97163 1.23007 0.96425 0.99049 0.98945 1.22821 0.98983 0.99122 0.97042 1.22970 0.96881 1.01062 0.96457 1.20542 0.97679 0.92479 0.98764 1.21295 0.99693 0.96647 1.01330 0.90695 0.88715 0.89327 0.92146 0.92207 0.87800 0.87857 0.88227 0.90140 0.91177 0.90268 0.91475 0.91342 0.89827 0.89351 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.86 10.95 55.55 0.61 -19.25 16 2 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 3 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.12 3.10 5.57 -106.83 -0.60 2.51 16 10 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 11 C -0.06 -1.45 9.67 -39.66 -0.38 -1.84 16 12 C -0.24 -5.27 5.54 -104.33 -0.58 -5.85 16 13 C 0.14 2.65 5.58 36.00 0.20 2.85 16 14 O -0.35 -6.63 10.20 -39.25 -0.40 -7.03 16 15 C 0.45 7.33 7.96 36.01 0.29 7.62 16 16 O -0.52 -9.45 15.54 -18.75 -0.29 -9.74 16 17 C -0.11 -1.25 5.63 -27.88 -0.16 -1.41 16 18 C -0.10 -1.04 3.11 -89.81 -0.28 -1.31 16 19 C -0.14 -1.36 7.65 -25.83 -0.20 -1.56 16 20 C -0.14 -1.15 8.09 -25.83 -0.21 -1.36 16 21 C -0.14 -1.10 7.65 -25.92 -0.20 -1.30 16 22 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 23 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 24 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 25 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 26 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.06 1.13 8.07 -51.93 -0.42 0.72 16 28 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 31 H 0.10 1.15 7.73 -51.93 -0.40 0.75 16 32 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -28.30 331.42 -9.50 -37.80 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.74 Total: 5.11 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -3.64 Total: -25.00 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.61 Total: -19.25 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.69 Total: -16.77 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.30 -9.50 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271895419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.931 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds