Wall clock time and date at job start Mon Mar 30 2020 20:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 115.55442 * 2 1 4 4 C 1.53081 * 117.51320 * 214.27268 * 2 1 3 5 5 C 1.53001 * 117.49714 * 145.66517 * 2 1 3 6 6 H 1.09000 * 117.50393 * 214.99998 * 5 2 1 7 7 C 1.50703 * 117.49713 * 0.02562 * 5 2 1 8 8 O 1.20826 * 120.00294 * 359.91477 * 7 5 2 9 9 O 1.34229 * 119.99945 * 179.91174 * 7 5 2 10 10 C 1.45200 * 117.00153 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47414 * 180.02562 * 10 9 7 12 12 C 1.38640 * 119.74391 * 269.72366 * 11 10 9 13 13 C 1.37624 * 120.24450 * 180.27492 * 12 11 10 14 14 C 1.40715 * 119.74429 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.24107 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00232 * 330.22079 * 15 14 13 17 17 C 1.39946 * 119.99781 * 150.21596 * 15 14 13 18 18 N 1.30828 * 120.00208 * 161.71875 * 17 15 14 19 19 Si 1.86800 * 120.00197 * 341.72522 * 17 15 14 20 20 H 1.48501 * 109.47128 * 95.40571 * 19 17 15 21 21 H 1.48501 * 109.47062 * 215.41013 * 19 17 15 22 22 H 1.48494 * 109.46941 * 335.40889 * 19 17 15 23 23 C 1.40712 * 119.51245 * 359.97438 * 14 13 12 24 24 C 1.37621 * 119.74733 * 359.97438 * 23 14 13 25 25 H 1.08993 * 109.47799 * 274.33462 * 1 2 3 26 26 H 1.09002 * 109.46701 * 34.33577 * 1 2 3 27 27 H 1.09003 * 109.47326 * 154.32819 * 1 2 3 28 28 H 1.08997 * 109.47475 * 205.66837 * 3 2 1 29 29 H 1.09002 * 109.46673 * 325.66849 * 3 2 1 30 30 H 1.09001 * 109.47549 * 85.66458 * 3 2 1 31 31 H 1.09001 * 117.48899 * 145.04194 * 4 2 1 32 32 H 1.08996 * 117.51232 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47303 * 59.99925 * 10 9 7 34 34 H 1.09001 * 109.46620 * 299.99859 * 10 9 7 35 35 H 1.07991 * 119.87880 * 0.24725 * 12 11 10 36 36 H 1.07994 * 120.12472 * 179.97438 * 13 12 11 37 37 H 0.96996 * 120.00137 * 180.02562 * 18 17 15 38 38 H 1.08006 * 120.12758 * 179.97438 * 23 14 13 39 39 H 1.07995 * 119.87497 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2371 -1.1219 -0.7646 5 6 2.2364 -1.1207 0.7655 6 1 3.1713 -0.8747 1.2690 7 6 1.3718 -2.1403 1.4612 8 8 0.1682 -2.0527 1.4027 9 8 1.9390 -3.1460 2.1459 10 6 1.0450 -4.0913 2.7904 11 6 1.8552 -5.1414 3.5059 12 6 2.2200 -6.3011 2.8396 13 6 2.9550 -7.2693 3.4849 14 6 3.3357 -7.0788 4.8261 15 6 4.0905 -8.0669 5.4994 16 1 3.9843 -9.1065 5.2268 17 6 4.9752 -7.6977 6.5189 18 7 5.3987 -8.5931 7.3736 19 14 5.5512 -5.9263 6.6597 20 1 4.6968 -5.2040 7.6361 21 1 6.9622 -5.8999 7.1220 22 1 5.4527 -5.2669 5.3328 23 6 2.9598 -5.8977 5.4923 24 6 2.2257 -4.9426 4.8269 25 1 -0.3634 0.0777 1.0246 26 1 -0.3633 0.8486 -0.5797 27 1 -0.3634 -0.9262 -0.4452 28 1 3.1823 1.3086 -0.4451 29 1 1.5810 2.0741 -0.5796 30 1 2.2766 1.7417 1.0247 31 1 3.1724 -0.8762 -1.2675 32 1 1.6123 -1.8597 -1.2679 33 1 0.4160 -4.5673 2.0382 34 1 0.4169 -3.5652 3.5092 35 1 1.9259 -6.4456 1.8106 36 1 3.2377 -8.1722 2.9642 37 1 6.0116 -8.3371 8.0805 38 1 3.2464 -5.7414 6.5218 39 1 1.9357 -4.0355 5.3363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271899315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:22 Heat of formation + Delta-G solvation = -55.138635 kcal Electronic energy + Delta-G solvation = -20177.996527 eV Core-core repulsion = 17050.724585 eV Total energy + Delta-G solvation = -3127.271943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56964 -38.40248 -37.65637 -35.86383 -33.81494 -31.38938 -29.82214 -29.79211 -27.65742 -27.53490 -24.86149 -23.27435 -21.61625 -20.79383 -20.15565 -19.15905 -17.56644 -17.51559 -16.31569 -16.08258 -15.48110 -14.85931 -14.41076 -14.07163 -13.92692 -13.84467 -13.69812 -12.98363 -12.83523 -12.63611 -12.41490 -12.34768 -12.21790 -12.06323 -11.93674 -11.47785 -11.26094 -10.88659 -10.85220 -10.46318 -10.42037 -10.21258 -10.17366 -9.97287 -9.74526 -9.62692 -9.20518 -7.80859 -7.67841 -7.05726 -4.59489 2.22106 2.25791 2.63455 2.98251 3.11094 3.19986 3.29994 3.52624 3.92318 4.36957 4.37533 4.53195 4.66804 4.83638 5.10546 5.33699 5.38268 5.42655 5.46947 5.52252 5.54862 5.68207 5.72722 5.77818 5.82380 5.93920 5.96647 6.00989 6.05833 6.29005 6.48791 6.75106 6.77796 6.83277 7.07559 7.33181 7.46654 7.69292 7.78266 8.02518 8.04221 8.25146 8.55523 8.69584 9.95786 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031086 B = 0.003616 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.516489 B = 7740.827178 C = 8160.162259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.116 4.116 4 C -0.143 4.143 5 C -0.165 4.165 6 H 0.132 0.868 7 C 0.485 3.515 8 O -0.515 6.515 9 O -0.348 6.348 10 C 0.135 3.865 11 C -0.237 4.237 12 C -0.055 4.055 13 C -0.213 4.213 14 C 0.100 3.900 15 C -0.441 4.441 16 H 0.093 0.907 17 C 0.084 3.916 18 N -0.801 5.801 19 Si 0.912 3.088 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.242 1.242 23 C -0.243 4.243 24 C -0.049 4.049 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.287 0.713 38 H 0.102 0.898 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 15.180 -11.313 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.096 4.096 3 C -0.173 4.173 4 C -0.180 4.180 5 C -0.184 4.184 6 H 0.150 0.850 7 C 0.329 3.671 8 O -0.404 6.404 9 O -0.264 6.264 10 C 0.063 3.937 11 C -0.238 4.238 12 C -0.074 4.074 13 C -0.232 4.232 14 C 0.097 3.903 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.136 4.136 18 N -0.425 5.425 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.165 1.165 23 C -0.262 4.262 24 C -0.067 4.067 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.085 15.009 -11.077 19.096 hybrid contribution 0.351 0.453 0.426 0.714 sum -3.734 15.462 -10.651 19.143 Atomic orbital electron populations 1.21401 0.90600 1.01580 1.02719 1.21714 0.96074 0.90722 1.01124 1.21404 1.00059 0.93486 1.02399 1.23289 1.03025 1.01194 0.90530 1.21951 1.01973 0.98833 0.95625 0.84970 1.22548 0.87212 0.80883 0.76430 1.90623 1.16037 1.74401 1.59381 1.86694 1.42783 1.35966 1.61006 1.21701 0.90134 0.87168 0.94651 1.18688 1.13582 0.96459 0.95104 1.20507 0.96020 0.93561 0.97304 1.21005 1.07058 1.00322 0.94830 1.17785 0.90139 0.91342 0.91062 1.19585 1.18738 0.95978 1.12570 0.88941 1.26218 0.94731 1.00194 0.92485 1.69693 1.25012 1.37047 1.10734 0.86289 0.76757 0.81897 0.81207 1.19525 1.21694 1.16514 1.20998 1.07594 0.98248 0.99345 1.20460 0.95889 0.96788 0.93592 0.91344 0.93006 0.91662 0.92065 0.91513 0.91808 0.87374 0.88086 0.91860 0.91889 0.88697 0.87904 0.90236 0.88007 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.09 37.16 0.30 -0.85 16 2 C -0.10 -0.96 2.70 -154.47 -0.42 -1.38 16 3 C -0.12 -0.87 9.85 37.16 0.37 -0.51 16 4 C -0.14 -1.39 9.53 -26.69 -0.25 -1.64 16 5 C -0.16 -1.96 6.02 -91.77 -0.55 -2.52 16 6 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 7 C 0.49 7.59 7.72 36.01 0.28 7.87 16 8 O -0.51 -8.70 12.86 -18.75 -0.24 -8.94 16 9 O -0.35 -6.23 10.20 -39.26 -0.40 -6.63 16 10 C 0.14 2.45 5.58 36.01 0.20 2.65 16 11 C -0.24 -4.95 5.54 -104.33 -0.58 -5.52 16 12 C -0.06 -1.17 9.67 -39.66 -0.38 -1.55 16 13 C -0.21 -4.90 9.80 -38.87 -0.38 -5.29 16 14 C 0.10 2.51 5.10 -106.83 -0.55 1.96 16 15 C -0.44 -11.73 9.57 -37.74 -0.36 -12.09 16 16 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 17 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 18 N -0.80 -20.96 13.93 55.55 0.77 -20.18 16 19 Si 0.91 20.59 24.52 -169.99 -4.17 16.42 16 20 H -0.27 -5.89 6.71 56.52 0.38 -5.51 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 23 C -0.24 -5.82 7.18 -38.87 -0.28 -6.10 16 24 C -0.05 -1.07 9.67 -39.66 -0.38 -1.45 16 25 H 0.07 0.84 7.26 -51.93 -0.38 0.47 16 26 H 0.05 0.45 7.92 -51.93 -0.41 0.04 16 27 H 0.06 0.79 7.02 -51.93 -0.36 0.42 16 28 H 0.06 0.40 7.90 -51.93 -0.41 -0.02 16 29 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.82 8.05 -51.93 -0.42 0.40 16 32 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.29 6.77 8.30 -40.82 -0.34 6.44 16 38 H 0.10 2.42 4.74 -52.48 -0.25 2.18 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -28.01 325.44 -7.82 -35.83 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.61 Total: 2.94 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -3.08 Total: -24.34 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.77 Total: -20.18 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.64 Total: -15.57 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.01 -7.82 -35.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271899315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.308 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds