Wall clock time and date at job start Mon Mar 30 2020 20:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.47008 * 179.97438 * 10 9 7 12 12 C 1.34235 * 116.99405 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99978 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99744 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47248 * 179.97438 * 14 12 11 16 16 H 1.08996 * 110.26664 * 52.92514 * 15 14 12 17 17 C 1.54348 * 110.30385 * 174.99967 * 15 14 12 18 18 C 1.54344 * 102.39096 * 92.57568 * 17 15 14 19 19 C 1.51369 * 105.17164 * 26.34960 * 18 17 15 20 20 C 1.38495 * 130.39500 * 162.80928 * 19 18 17 21 21 C 1.38096 * 120.21670 * 179.97438 * 20 19 18 22 22 C 1.38260 * 119.93743 * 0.02562 * 21 20 19 23 23 C 1.38099 * 119.93242 * 359.97438 * 22 21 20 24 24 C 1.38218 * 109.75518 * 342.80800 * 19 18 17 25 25 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 27 27 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 28 28 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 29 29 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 30 30 H 1.08998 * 109.47040 * 300.00119 * 14 12 11 31 31 H 1.09001 * 109.47517 * 59.99655 * 14 12 11 32 32 H 1.08995 * 110.82076 * 210.80643 * 17 15 14 33 33 H 1.09001 * 110.81806 * 334.15256 * 17 15 14 34 34 H 1.08999 * 110.30217 * 145.27257 * 18 17 15 35 35 H 1.09000 * 110.30185 * 267.42445 * 18 17 15 36 36 H 1.07996 * 119.89193 * 359.97438 * 20 19 18 37 37 H 1.08004 * 120.03658 * 180.02562 * 21 20 19 38 38 H 1.07995 * 120.03438 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.89732 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 8 1.5193 -4.9195 0.0024 12 6 2.2505 -6.0452 0.0030 13 8 3.4570 -5.9819 0.0026 14 6 1.5663 -7.3880 0.0031 15 6 2.6201 -8.4973 0.0032 16 1 3.3270 -8.3464 0.8190 17 6 1.9434 -9.8788 0.1295 18 6 1.7638 -10.2956 -1.3457 19 6 2.8545 -9.5651 -2.0994 20 6 3.3753 -9.7870 -3.3634 21 6 4.3834 -8.9792 -3.8514 22 6 4.8755 -7.9455 -3.0761 23 6 4.3576 -7.7227 -1.8155 24 6 3.3464 -8.5318 -1.3243 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8896 28 1 2.8727 -3.6047 -0.8877 29 1 2.8713 -3.6038 0.8923 30 1 0.9432 -7.4782 0.8928 31 1 0.9439 -7.4788 -0.8871 32 1 2.5910 -10.5808 0.6545 33 1 0.9796 -9.7936 0.6313 34 1 1.8874 -11.3734 -1.4519 35 1 0.7828 -9.9891 -1.7086 36 1 2.9917 -10.5944 -3.9694 37 1 4.7871 -9.1545 -4.8376 38 1 5.6642 -7.3131 -3.4560 39 1 4.7421 -6.9149 -1.2106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734633080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:27 Heat of formation + Delta-G solvation = -102.611583 kcal Electronic energy + Delta-G solvation = -20435.889130 eV Core-core repulsion = 17306.558605 eV Total energy + Delta-G solvation = -3129.330524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.87100 -40.76782 -37.90146 -36.91209 -35.84312 -33.01413 -32.19175 -30.98244 -29.70852 -27.25529 -26.18303 -23.61047 -23.54402 -22.35174 -21.79925 -20.79033 -19.21191 -18.46640 -17.88097 -17.64435 -17.03947 -16.27426 -15.97451 -15.69594 -15.64111 -15.45249 -15.03220 -14.24889 -14.15688 -13.87975 -13.73215 -13.63623 -13.40159 -13.21540 -13.06189 -12.53074 -12.50012 -12.18579 -12.04777 -11.99922 -11.90601 -11.73210 -11.61338 -11.56110 -11.34017 -10.88589 -10.62461 -9.72093 -9.45845 -8.79860 -6.52316 0.41224 0.47879 1.17523 1.51606 1.60379 1.72562 1.80931 2.53491 2.81969 3.07131 3.43536 3.54176 3.69625 3.90637 4.03750 4.08063 4.13712 4.19506 4.22776 4.33378 4.36227 4.50416 4.52642 4.58814 4.67430 4.83560 4.95161 4.98102 5.00334 5.10679 5.16500 5.20284 5.27098 5.32888 5.52715 5.56469 5.67564 5.76836 5.80216 6.04126 6.13030 6.42632 6.74303 7.30038 8.62124 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.027808 B = 0.003491 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.666009 B = 8018.755318 C = 8586.120207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.031 4.031 3 Si 1.122 2.878 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.279 1.279 7 C -0.628 4.628 8 H 0.055 0.945 9 C 0.015 3.985 10 C 0.099 3.901 11 O -0.371 6.371 12 C 0.446 3.554 13 O -0.532 6.532 14 C -0.095 4.095 15 C -0.041 4.041 16 H 0.076 0.924 17 C -0.105 4.105 18 C -0.080 4.080 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.114 4.114 25 H 0.258 0.742 26 H 0.005 0.995 27 H 0.002 0.998 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -24.217 -3.366 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.229 4.229 3 Si 0.942 3.058 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.204 1.204 7 C -0.665 4.665 8 H 0.073 0.927 9 C -0.022 4.022 10 C 0.026 3.974 11 O -0.288 6.288 12 C 0.291 3.709 13 O -0.422 6.422 14 C -0.132 4.132 15 C -0.060 4.060 16 H 0.094 0.906 17 C -0.142 4.142 18 C -0.116 4.116 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.164 4.164 23 C -0.140 4.140 24 C -0.114 4.114 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.208 -22.543 -3.361 23.177 hybrid contribution 0.555 -1.075 -0.097 1.213 sum 4.763 -23.618 -3.458 24.340 Atomic orbital electron populations 1.70905 1.07881 1.30120 1.47580 1.27537 0.96547 1.06764 0.92064 0.82881 0.74112 0.70621 0.78185 1.19337 1.19199 1.20402 1.22228 0.94879 0.92458 1.56974 0.92684 1.19145 0.95054 0.92091 0.95931 1.22887 0.94604 0.79274 1.00651 1.86510 1.42852 1.15906 1.83508 1.24692 0.86798 0.87792 0.71609 1.90534 1.16880 1.88380 1.46372 1.21601 0.99068 0.84784 1.07763 1.20589 0.95281 0.95395 0.94687 0.90584 1.22393 1.02278 0.92930 0.96630 1.21152 0.96347 1.00596 0.93529 1.21063 0.97955 0.96691 0.94602 1.20949 0.97157 1.00646 0.95154 1.21364 0.97196 0.95047 1.00427 1.21317 1.01229 0.99284 0.94556 1.21199 0.97027 0.99248 0.96488 1.20701 0.96805 0.96538 0.97363 0.93265 0.97679 0.97967 0.92822 0.92339 0.84211 0.86565 0.89523 0.87481 0.88690 0.88849 0.83754 0.83746 0.85639 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.65 21.45 0.29 -57.42 16 2 C -0.03 -1.79 5.46 84.66 0.46 -1.33 16 3 Si 1.12 50.17 29.90 68.60 2.05 52.22 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.63 -36.72 9.11 25.60 0.23 -36.49 16 8 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.01 0.81 4.66 29.85 0.14 0.95 16 10 C 0.10 4.64 5.40 71.98 0.39 5.02 16 11 O -0.37 -15.10 10.22 -51.46 -0.53 -15.63 16 12 C 0.45 15.30 7.73 71.24 0.55 15.85 16 13 O -0.53 -20.60 12.15 21.98 0.27 -20.33 16 14 C -0.10 -2.11 5.21 29.85 0.16 -1.96 16 15 C -0.04 -0.86 2.50 -10.87 -0.03 -0.89 16 16 H 0.08 1.80 7.91 -2.39 -0.02 1.78 16 17 C -0.11 -1.32 6.60 31.51 0.21 -1.11 16 18 C -0.08 -1.03 6.76 30.52 0.21 -0.83 16 19 C -0.10 -2.12 6.14 -19.59 -0.12 -2.24 16 20 C -0.12 -2.36 10.04 22.30 0.22 -2.13 16 21 C -0.12 -2.59 10.05 22.24 0.22 -2.37 16 22 C -0.15 -3.80 10.05 22.24 0.22 -3.58 16 23 C -0.12 -3.67 9.06 22.30 0.20 -3.47 16 24 C -0.11 -2.93 5.16 -19.59 -0.10 -3.03 16 25 H 0.26 16.21 7.22 -92.70 -0.67 15.54 16 26 H 0.00 0.28 8.01 -2.39 -0.02 0.26 16 27 H 0.00 0.12 8.01 -2.39 -0.02 0.10 16 28 H 0.05 2.53 8.13 -2.39 -0.02 2.51 16 29 H 0.06 2.71 8.13 -2.39 -0.02 2.69 16 30 H 0.14 2.24 8.09 -2.39 -0.02 2.22 16 31 H 0.12 2.34 8.13 -2.39 -0.02 2.32 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.84 7.86 -2.39 -0.02 0.82 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.11 3.93 5.72 -2.91 -0.02 3.91 16 Total: -1.00 -72.23 324.73 6.18 -66.04 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.13 Total: 12.71 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 2.97 Total: -37.59 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.29 Total: -57.42 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.26 Total: -35.96 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -72.23 6.18 -66.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734633080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.568 kcal (2) G-P(sol) polarization free energy of solvation -72.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds