Wall clock time and date at job start Mon Mar 30 2020 20:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.64114 * 2 1 4 4 C 1.54316 * 110.72105 * 236.65726 * 2 1 3 5 5 N 1.47026 * 107.27333 * 219.44269 * 4 2 1 6 6 C 1.36935 * 125.65117 * 178.97713 * 5 4 2 7 7 H 1.08002 * 119.99865 * 349.95269 * 6 5 4 8 8 C 1.38810 * 120.00104 * 169.95423 * 6 5 4 9 9 N 1.31618 * 120.00103 * 350.42009 * 8 6 5 10 10 Si 1.86801 * 120.00009 * 170.41366 * 8 6 5 11 11 H 1.48494 * 109.47069 * 94.13967 * 10 8 6 12 12 H 1.48497 * 109.46932 * 214.14596 * 10 8 6 13 13 H 1.48505 * 109.47073 * 334.14168 * 10 8 6 14 14 C 1.47525 * 108.71351 * 358.94684 * 5 4 2 15 15 C 1.54909 * 104.78593 * 24.11494 * 14 5 4 16 16 H 1.09000 * 111.00414 * 81.08740 * 15 14 5 17 17 N 1.46498 * 111.00674 * 204.90301 * 15 14 5 18 18 C 1.34774 * 120.00351 * 270.42015 * 17 15 14 19 19 O 1.21283 * 119.99864 * 359.97438 * 18 17 15 20 20 C 1.50700 * 120.00511 * 180.02562 * 18 17 15 21 21 H 1.09001 * 115.54454 * 34.32264 * 20 18 17 22 22 C 1.53000 * 117.49606 * 248.62412 * 20 18 17 23 23 C 1.52992 * 117.50208 * 179.97438 * 20 18 17 24 24 F 1.39900 * 117.50184 * 214.97863 * 23 20 18 25 25 F 1.39902 * 117.49673 * 359.97438 * 23 20 18 26 26 H 1.09001 * 109.46858 * 296.86302 * 1 2 3 27 27 H 1.08993 * 109.47164 * 56.86305 * 1 2 3 28 28 H 1.09005 * 109.46809 * 176.86576 * 1 2 3 29 29 H 1.08999 * 109.88390 * 338.86329 * 4 2 1 30 30 H 1.08997 * 109.88168 * 99.87239 * 4 2 1 31 31 H 0.96996 * 120.00024 * 179.97438 * 9 8 6 32 32 H 1.09003 * 110.36978 * 265.30556 * 14 5 4 33 33 H 1.08999 * 110.41560 * 142.95429 * 14 5 4 34 34 H 0.97004 * 119.99836 * 90.41955 * 17 15 14 35 35 H 1.08998 * 117.49859 * 359.97438 * 22 20 18 36 36 H 1.09001 * 117.49441 * 145.02220 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2446 -1.5520 -0.7362 6 6 4.0044 -2.3996 -1.4974 7 1 3.6724 -2.6821 -2.4855 8 6 5.2012 -2.8956 -0.9990 9 7 5.7002 -2.4108 0.1182 10 14 6.1035 -4.2514 -1.9139 11 1 7.1174 -3.6495 -2.8166 12 1 6.7778 -5.1438 -0.9371 13 1 5.1325 -5.0388 -2.7154 14 6 3.4636 -1.2486 0.6908 15 6 2.0790 -0.7933 1.2153 16 1 1.4451 -1.6510 1.4405 17 7 2.2206 0.0737 2.3877 18 6 2.2506 -0.4635 3.6234 19 8 2.1600 -1.6646 3.7648 20 6 2.3957 0.4283 4.8295 21 1 1.9135 1.4029 4.7541 22 6 3.7064 0.3468 5.6147 23 6 2.4227 -0.2419 6.2046 24 9 1.8273 0.4435 7.2690 25 9 2.3101 -1.6358 6.2461 26 1 -0.3633 0.4644 0.9168 27 1 -0.3633 0.5617 -0.8605 28 1 -0.3633 -1.0262 -0.0562 29 1 1.3130 -1.4786 -1.5749 30 1 2.3715 -0.1061 -1.9985 31 1 6.5363 -2.7577 0.4667 32 1 4.1933 -0.4463 0.8004 33 1 3.7963 -2.1401 1.2224 34 1 2.2928 1.0344 2.2746 35 1 4.4634 -0.3521 5.2592 36 1 4.0866 1.2680 6.0562 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079666966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:16 Heat of formation + Delta-G solvation = -77.698409 kcal Electronic energy + Delta-G solvation = -21637.919970 eV Core-core repulsion = 17987.732983 eV Total energy + Delta-G solvation = -3650.186987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.123 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.69443 -47.31845 -39.75337 -37.76022 -35.55891 -33.96925 -32.65006 -30.41518 -28.08341 -25.74329 -24.77154 -23.24505 -22.58724 -20.61886 -20.16095 -19.53350 -18.20383 -17.11218 -16.78313 -16.26819 -16.04381 -15.45925 -14.94095 -14.60980 -14.03044 -13.95618 -13.84463 -13.62284 -13.33828 -13.10629 -12.96155 -12.62121 -12.50757 -12.30476 -11.69527 -11.39489 -11.30859 -11.02894 -10.80398 -10.67082 -10.43049 -10.25335 -9.99109 -9.91737 -9.78162 -9.59707 -8.62660 -8.53131 -6.82232 -5.74694 -3.08348 2.37344 2.81838 3.05269 3.40579 3.46438 3.47564 3.49100 4.12073 4.31345 4.49149 4.51100 4.82991 5.05227 5.23678 5.26809 5.39123 5.42944 5.51648 5.62169 5.71164 5.90764 5.98315 6.10541 6.17474 6.33915 6.41424 6.65167 6.71713 6.90398 7.39753 7.57009 7.75168 7.80487 8.24426 8.43654 9.17674 9.80246 10.45907 11.37973 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.005111 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.520580 B = 5476.617595 C = 6513.264833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.602 5.602 6 C -0.233 4.233 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.170 3.830 15 C 0.117 3.883 16 H 0.092 0.908 17 N -0.704 5.704 18 C 0.537 3.463 19 O -0.517 6.517 20 C -0.192 4.192 21 H 0.146 0.854 22 C -0.147 4.147 23 C 0.225 3.775 24 F -0.161 7.161 25 F -0.137 7.137 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.253 0.747 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.397 0.603 35 H 0.132 0.868 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 10.538 8.981 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.328 5.328 6 C -0.361 4.361 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.044 3.956 15 C 0.012 3.988 16 H 0.110 0.890 17 N -0.354 5.354 18 C 0.320 3.680 19 O -0.391 6.391 20 C -0.215 4.215 21 H 0.163 0.837 22 C -0.185 4.185 23 C 0.188 3.812 24 F -0.141 7.141 25 F -0.117 7.117 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.231 0.769 35 H 0.150 0.850 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.379 9.494 9.109 15.085 hybrid contribution 0.476 -0.110 -0.384 0.621 sum -6.903 9.385 8.725 14.555 Atomic orbital electron populations 1.21752 0.94893 1.01965 1.00943 1.22410 0.95258 0.99214 0.96021 0.90656 1.21345 0.90410 0.93102 0.93663 1.44376 1.31228 1.50686 1.06552 1.19010 0.99674 1.18941 0.98475 0.90475 1.24832 0.96890 1.00459 0.98013 1.69944 1.20627 1.43565 1.22110 0.86127 0.79548 0.81659 0.78560 1.21606 1.21562 1.20521 1.21698 0.89359 0.99909 0.84628 1.22727 1.01078 0.92525 0.82453 0.88962 1.45748 1.73725 1.10524 1.05428 1.19116 0.77514 0.87979 0.83347 1.90822 1.48215 1.14408 1.85700 1.23656 1.03670 1.02491 0.91669 0.83667 1.24303 0.91326 1.04613 0.98305 1.19512 1.01074 0.75650 0.84986 1.93030 1.85188 1.78288 1.57598 1.93141 1.96425 1.25732 1.96421 0.93105 0.92760 0.92436 0.95446 0.95754 0.93672 0.95349 0.90777 0.76948 0.85020 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.16 37.16 0.34 -1.46 16 2 C -0.11 -1.76 3.19 -88.79 -0.28 -2.04 16 3 H 0.08 1.09 7.99 -51.93 -0.42 0.68 16 4 C 0.14 2.86 6.84 -3.07 -0.02 2.83 16 5 N -0.60 -15.38 3.40 -169.99 -0.58 -15.96 16 6 C -0.23 -6.54 10.24 -15.06 -0.15 -6.70 16 7 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 8 C 0.00 -0.14 5.40 -17.43 -0.09 -0.24 16 9 N -0.92 -27.20 10.68 55.49 0.59 -26.61 16 10 Si 0.91 22.30 29.56 -169.99 -5.03 17.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.17 4.12 5.12 -2.47 -0.01 4.11 16 15 C 0.12 2.18 2.81 -65.78 -0.19 1.99 16 16 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 17 N -0.70 -10.46 5.21 -51.73 -0.27 -10.73 16 18 C 0.54 8.55 7.61 -10.99 -0.08 8.47 16 19 O -0.52 -10.78 14.83 5.55 0.08 -10.70 16 20 C -0.19 -2.17 6.17 -91.78 -0.57 -2.74 16 21 H 0.15 1.10 8.14 -51.93 -0.42 0.67 16 22 C -0.15 -1.46 10.21 -26.71 -0.27 -1.74 16 23 C 0.23 2.86 5.19 -26.71 -0.14 2.72 16 24 F -0.16 -1.93 17.60 2.25 0.04 -1.89 16 25 F -0.14 -2.26 15.71 2.25 0.04 -2.23 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.07 2.11 6.94 -51.93 -0.36 1.75 16 34 H 0.40 4.45 8.54 -40.82 -0.35 4.10 16 35 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -33.71 310.18 -6.76 -40.47 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.84 Total: 0.47 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.47 Total: 5.21 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.25 Total: -53.30 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.71 -6.76 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079666966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.229 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds