Wall clock time and date at job start Mon Mar 30 2020 20:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39896 * 109.46954 * 2 1 4 4 F 1.39895 * 109.47321 * 239.99523 * 2 1 3 5 5 C 1.50701 * 109.46807 * 119.99702 * 2 1 3 6 6 O 1.21277 * 120.00123 * 335.00142 * 5 2 1 7 7 N 1.34782 * 119.99741 * 155.00295 * 5 2 1 8 8 C 1.47284 * 136.54411 * 359.97438 * 7 5 2 9 9 C 1.54078 * 87.60499 * 151.38684 * 8 7 5 10 10 H 1.09005 * 115.04247 * 141.62898 * 9 8 7 11 11 C 1.53061 * 111.39493 * 273.97292 * 9 8 7 12 12 C 1.52697 * 109.28669 * 142.28849 * 11 9 8 13 13 N 1.46537 * 108.48865 * 301.79788 * 12 11 9 14 14 C 1.36943 * 119.73671 * 236.39623 * 13 12 11 15 15 H 1.07996 * 119.99854 * 24.90401 * 14 13 12 16 16 C 1.38811 * 120.00276 * 204.90854 * 14 13 12 17 17 N 1.31623 * 119.99875 * 14.49564 * 16 14 13 18 18 Si 1.86796 * 120.00046 * 194.49958 * 16 14 13 19 19 H 1.48497 * 109.46949 * 89.99943 * 18 16 14 20 20 H 1.48504 * 109.46908 * 209.99723 * 18 16 14 21 21 H 1.48496 * 109.47195 * 329.99843 * 18 16 14 22 22 C 1.45696 * 120.52630 * 56.12116 * 13 12 11 23 23 C 1.46468 * 136.53869 * 179.97438 * 7 5 2 24 24 H 1.08997 * 111.43720 * 97.09940 * 23 7 5 25 25 H 1.08996 * 109.47435 * 300.00094 * 1 2 3 26 26 H 1.09000 * 109.47356 * 60.00493 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08998 * 113.52945 * 266.07104 * 8 7 5 29 29 H 1.08999 * 113.52832 * 36.63568 * 8 7 5 30 30 H 1.09000 * 109.51678 * 262.33213 * 11 9 8 31 31 H 1.09000 * 109.51451 * 22.42784 * 11 9 8 32 32 H 1.09003 * 109.62694 * 182.01100 * 12 11 9 33 33 H 1.09003 * 109.55559 * 61.53544 * 12 11 9 34 34 H 0.97003 * 120.00053 * 179.97438 * 17 16 14 35 35 H 1.09003 * 108.78811 * 81.16286 * 22 13 12 36 36 H 1.09006 * 108.78850 * 199.37309 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 8 1.3369 -0.7704 2.2223 7 7 3.2543 -1.2789 1.2288 8 6 4.3639 -1.4256 0.2714 9 6 5.3161 -1.4753 1.4817 10 1 6.1442 -2.1780 1.3887 11 6 5.7253 -0.0696 1.9282 12 6 5.8056 -0.0280 3.4525 13 7 4.4988 -0.4061 3.9972 14 6 3.8463 0.4443 4.8494 15 1 4.0518 1.5041 4.8169 16 6 2.9207 -0.0557 5.7551 17 7 2.8717 -1.3479 6.0001 18 14 1.7448 1.1054 6.6259 19 1 0.5061 1.2516 5.8200 20 1 1.4039 0.5543 7.9621 21 1 2.3896 2.4333 6.7879 22 6 3.8855 -1.6770 3.6346 23 6 4.0788 -2.0300 2.1782 24 1 3.9926 -3.1046 2.0175 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.3302 -2.3567 -0.2943 29 1 4.5098 -0.5513 -0.3629 30 1 6.6985 0.1783 1.5044 31 1 4.9842 0.6519 1.5844 32 1 6.0619 0.9801 3.7783 33 1 6.5646 -0.7304 3.7972 34 1 2.2252 -1.6973 6.6333 35 1 4.3224 -2.4652 4.2478 36 1 2.8171 -1.6237 3.8442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084149640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:01:28 Heat of formation + Delta-G solvation = -60.131912 kcal Electronic energy + Delta-G solvation = -23137.663044 eV Core-core repulsion = 19488.237798 eV Total energy + Delta-G solvation = -3649.425246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.03701 -47.04088 -40.57799 -37.95442 -35.27809 -32.21402 -31.42509 -30.20541 -29.27398 -27.03664 -24.63148 -23.84023 -22.56812 -21.09917 -20.15435 -18.48037 -17.68184 -17.47562 -16.57291 -16.19723 -15.72965 -15.34684 -14.36616 -14.17199 -14.01822 -13.66960 -13.48210 -13.37796 -13.28529 -13.13802 -12.74713 -12.55076 -12.45846 -12.27976 -11.94822 -11.78642 -11.51266 -11.14521 -10.69639 -10.66998 -10.50061 -10.18771 -9.90272 -9.79680 -9.65779 -9.11390 -8.33163 -8.31088 -6.61703 -5.67067 -3.08887 2.64317 2.80033 3.47885 3.53796 3.55669 3.78611 4.04819 4.45175 4.58024 4.63057 4.67532 5.15108 5.35486 5.38636 5.43899 5.52768 5.58300 5.60453 5.67719 5.82140 5.88625 5.96263 6.08890 6.26420 6.37975 6.45514 6.55499 6.77614 6.99100 7.42821 7.72139 7.91422 8.03254 8.28646 8.55746 9.34157 9.98138 10.45447 11.41381 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.008835 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.941051 B = 3168.540332 C = 4070.220618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.283 3.717 3 F -0.184 7.184 4 F -0.195 7.195 5 C 0.510 3.490 6 O -0.481 6.481 7 N -0.619 5.619 8 C 0.096 3.904 9 C -0.113 4.113 10 H 0.097 0.903 11 C -0.117 4.117 12 C 0.148 3.852 13 N -0.585 5.585 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.010 3.990 17 N -0.905 5.905 18 Si 0.901 3.099 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.166 3.834 23 C 0.119 3.881 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.252 0.748 35 H 0.034 0.966 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -1.050 -14.438 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.243 3.757 3 F -0.165 7.165 4 F -0.176 7.176 5 C 0.293 3.707 6 O -0.354 6.354 7 N -0.354 5.354 8 C -0.027 4.027 9 C -0.133 4.133 10 H 0.115 0.885 11 C -0.157 4.157 12 C 0.022 3.978 13 N -0.308 5.308 14 C -0.382 4.382 15 H 0.081 0.919 16 C -0.188 4.188 17 N -0.550 5.550 18 Si 0.732 3.268 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.039 3.961 23 C 0.016 3.984 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.792 -1.056 -13.770 13.833 hybrid contribution -0.617 0.554 0.075 0.833 sum 0.175 -0.501 -13.695 13.705 Atomic orbital electron populations 1.22602 0.89274 1.06040 1.05870 1.21493 0.95384 0.76253 0.82534 1.93067 1.90563 1.36297 1.96579 1.93009 1.90611 1.80830 1.53192 1.19972 0.80757 0.81203 0.88750 1.90861 1.54392 1.57844 1.32301 1.49466 1.13669 1.53734 1.18542 1.23443 0.83974 1.01587 0.93688 1.22789 0.96073 0.99229 0.95165 0.88532 1.21782 0.99946 0.93978 0.99947 1.20642 0.88476 0.98503 0.90199 1.43463 1.15600 1.19543 1.52183 1.19126 1.19232 0.89003 1.10847 0.91881 1.24924 1.00836 0.95844 0.97225 1.70007 1.36927 1.11400 1.36629 0.86304 0.81856 0.80161 0.78522 1.21311 1.21843 1.20628 1.20214 1.01964 0.87924 0.85950 1.22817 0.85495 0.94681 0.95438 0.90385 0.87959 0.89577 0.89034 0.89845 0.90719 0.92398 0.92074 0.92492 0.96169 0.93791 0.94843 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.92 37.16 0.33 -2.02 16 2 C 0.28 4.58 2.43 -27.88 -0.07 4.51 16 3 F -0.18 -3.19 17.05 2.25 0.04 -3.15 16 4 F -0.20 -2.87 15.77 2.25 0.04 -2.83 16 5 C 0.51 10.22 7.41 -10.98 -0.08 10.14 16 6 O -0.48 -11.63 15.34 5.56 0.09 -11.55 16 7 N -0.62 -11.48 3.30 -187.69 -0.62 -12.10 16 8 C 0.10 1.35 6.72 -11.53 -0.08 1.27 16 9 C -0.11 -1.73 4.57 -90.31 -0.41 -2.14 16 10 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 11 C -0.12 -1.97 5.68 -26.85 -0.15 -2.13 16 12 C 0.15 3.07 6.43 -4.18 -0.03 3.04 16 13 N -0.59 -14.96 3.03 -175.17 -0.53 -15.49 16 14 C -0.25 -7.24 9.53 -15.06 -0.14 -7.39 16 15 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 16 C 0.01 0.30 4.94 -17.43 -0.09 0.21 16 17 N -0.90 -27.29 10.94 55.49 0.61 -26.68 16 18 Si 0.90 23.28 29.58 -169.99 -5.03 18.25 16 19 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 20 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 22 C 0.17 4.08 4.59 -5.43 -0.02 4.05 16 23 C 0.12 2.25 4.03 -77.68 -0.31 1.94 16 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.10 1.44 7.87 -51.93 -0.41 1.03 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.00 8.02 -51.93 -0.42 0.59 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.16 7.68 -51.93 -0.40 0.76 16 32 H 0.06 1.17 7.87 -51.93 -0.41 0.76 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.88 8.00 -51.93 -0.42 0.47 16 36 H 0.10 2.97 4.95 -51.93 -0.26 2.71 16 LS Contribution 299.10 15.07 4.51 4.51 Total: -1.00 -33.19 299.10 -6.77 -39.96 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.81 Total: -2.40 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -1.06 Total: 11.49 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.54 Total: -54.27 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.07 Total: -5.99 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.03 Total: 18.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.19 -6.77 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084149640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.172 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds