Wall clock time and date at job start Mon Mar 30 2020 20:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35701 * 126.30376 * 2 1 4 4 N 1.30307 * 108.94958 * 180.27655 * 3 2 1 5 5 C 1.34988 * 109.19256 * 359.73333 * 4 3 2 6 6 C 1.47854 * 126.12413 * 180.02562 * 5 4 3 7 7 N 1.31810 * 126.62705 * 179.97438 * 6 5 4 8 8 N 1.28886 * 109.82279 * 180.13207 * 7 6 5 9 9 C 1.29719 * 109.85920 * 0.08073 * 8 7 6 10 10 N 1.36118 * 126.62019 * 359.69058 * 6 5 4 11 11 C 1.46154 * 128.83189 * 0.15768 * 10 6 5 12 12 C 1.53351 * 109.21405 * 161.42724 * 11 10 6 13 13 N 1.47058 * 109.28179 * 45.43424 * 12 11 10 14 14 C 1.36939 * 120.90862 * 116.18783 * 13 12 11 15 15 H 1.08001 * 119.99645 * 335.71298 * 14 13 12 16 16 C 1.38812 * 120.00183 * 155.71703 * 14 13 12 17 17 N 1.31618 * 119.99766 * 344.35000 * 16 14 13 18 18 Si 1.86797 * 119.99946 * 164.35596 * 16 14 13 19 19 H 1.48498 * 109.47424 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47382 * 120.00041 * 18 16 14 21 21 H 1.48505 * 109.46725 * 239.99607 * 18 16 14 22 22 C 1.47523 * 118.18671 * 296.20834 * 13 12 11 23 23 C 1.36079 * 107.75304 * 359.97438 * 5 4 3 24 24 H 1.08995 * 109.46500 * 270.18221 * 1 2 3 25 25 H 1.08995 * 109.47062 * 30.18251 * 1 2 3 26 26 H 1.08998 * 109.46967 * 150.18679 * 1 2 3 27 27 H 1.07994 * 125.52167 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.68325 * 41.38694 * 11 10 6 29 29 H 1.09005 * 109.35267 * 281.26365 * 11 10 6 30 30 H 1.09003 * 109.50190 * 285.49577 * 12 11 10 31 31 H 1.08994 * 109.50860 * 165.37812 * 12 11 10 32 32 H 0.97007 * 119.99415 * 180.02562 * 17 16 14 33 33 H 1.08996 * 109.96290 * 283.97866 * 22 13 12 34 34 H 1.08999 * 109.96517 * 162.68169 * 22 13 12 35 35 H 1.07999 * 126.64834 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0936 0.0000 4 7 3.5122 0.7049 -0.0059 5 6 3.5556 -0.6442 -0.0040 6 6 4.7772 -1.4771 -0.0086 7 7 4.8310 -2.7941 -0.0064 8 7 6.0604 -3.1813 -0.0091 9 6 6.8472 -2.1500 -0.0114 10 7 6.0634 -1.0319 -0.0214 11 6 6.5569 0.3438 -0.0305 12 6 8.0234 0.3568 0.4178 13 7 8.7523 -0.7167 -0.2742 14 6 9.7703 -0.4286 -1.1436 15 1 9.8063 0.5335 -1.6330 16 6 10.7557 -1.3731 -1.3961 17 7 10.8976 -2.4067 -0.5936 18 14 11.8805 -1.1771 -2.8745 19 1 11.5173 0.0593 -3.6124 20 1 13.2897 -1.0842 -2.4155 21 1 11.7284 -2.3510 -3.7712 22 6 8.3567 -2.1124 -0.0065 23 6 2.2736 -1.1005 0.0040 24 1 -0.3632 0.0033 1.0276 25 1 -0.3633 0.8883 -0.5166 26 1 -0.3633 -0.8916 -0.5109 27 1 1.9316 2.1197 0.0004 28 1 5.9621 0.9517 0.6512 29 1 6.4810 0.7482 -1.0399 30 1 8.0761 0.1968 1.4948 31 1 8.4712 1.3191 0.1700 32 1 11.5865 -3.0665 -0.7698 33 1 8.7337 -2.4260 0.9669 34 1 8.7475 -2.7661 -0.7863 35 1 1.9568 -2.1330 0.0079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119318129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:05 Heat of formation + Delta-G solvation = 153.391492 kcal Electronic energy + Delta-G solvation = -20774.600347 eV Core-core repulsion = 17617.416108 eV Total energy + Delta-G solvation = -3157.184239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.98914 -42.88875 -38.40882 -35.80515 -35.00206 -33.39914 -32.44719 -31.08493 -29.78354 -28.06809 -27.52015 -25.43293 -24.31732 -23.63113 -22.06727 -21.24386 -20.62353 -18.79690 -18.39675 -17.55403 -17.51279 -16.68573 -16.48909 -15.82656 -15.66209 -15.39196 -15.10546 -14.94656 -14.55840 -14.41578 -13.80850 -13.66145 -13.37250 -13.29888 -12.91844 -12.74480 -12.57951 -12.30170 -12.24008 -11.91707 -11.49753 -11.21806 -11.06744 -10.86933 -10.68301 -10.32994 -9.14305 -8.99439 -7.99159 -5.44817 0.37170 1.22268 1.47577 1.49549 1.52719 1.60803 1.65226 1.90824 2.38569 2.44716 2.97831 3.14945 3.34427 3.65400 3.73171 3.83877 4.04551 4.14540 4.20023 4.22760 4.37585 4.53324 4.70619 4.75063 4.81505 4.83182 4.94759 5.02885 5.11071 5.15006 5.31273 5.45650 5.58647 5.98582 6.18529 6.23246 6.91353 6.94078 7.60292 7.71786 8.14245 9.11917 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.035630 B = 0.004425 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.662534 B = 6326.466405 C = 6687.429578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.457 5.457 3 C 0.207 3.793 4 N -0.518 5.518 5 C 0.022 3.978 6 C 0.254 3.746 7 N -0.324 5.324 8 N -0.330 5.330 9 C 0.170 3.830 10 N -0.457 5.457 11 C 0.108 3.892 12 C 0.128 3.872 13 N -0.610 5.610 14 C -0.271 4.271 15 H 0.084 0.916 16 C -0.044 4.044 17 N -0.934 5.934 18 Si 0.974 3.026 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.294 1.294 22 C 0.273 3.727 23 C 0.021 3.979 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.257 0.743 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.105 0.895 32 H 0.256 0.744 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.341 10.261 1.608 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.139 5.139 3 C -0.077 4.077 4 N -0.237 5.237 5 C -0.106 4.106 6 C -0.013 4.013 7 N -0.166 5.166 8 N -0.170 5.170 9 C -0.100 4.100 10 N -0.147 5.147 11 C -0.016 4.016 12 C 0.002 3.998 13 N -0.334 5.334 14 C -0.400 4.400 15 H 0.102 0.898 16 C -0.240 4.240 17 N -0.579 5.579 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.221 1.221 22 C 0.145 3.855 23 C -0.119 4.119 24 H 0.113 0.887 25 H 0.136 0.864 26 H 0.116 0.884 27 H 0.273 0.727 28 H 0.132 0.868 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -22.106 9.288 1.578 24.030 hybrid contribution 0.756 0.270 -0.595 0.999 sum -21.350 9.559 0.983 23.412 Atomic orbital electron populations 1.22504 0.72484 1.06917 1.05480 1.45805 1.09793 1.05396 1.52862 1.25959 0.83674 0.95401 1.02705 1.70146 1.22603 1.09613 1.21306 1.17219 0.88266 0.89859 1.15299 1.21995 0.84185 0.90996 1.04079 1.74491 1.12455 1.07287 1.22391 1.73777 0.96415 1.25435 1.21394 1.26382 0.98886 0.82541 1.02240 1.46347 1.05348 1.09833 1.53161 1.22626 0.97497 0.77662 1.03779 1.21463 0.88937 0.94098 0.95317 1.44389 1.38149 1.00306 1.50538 1.19574 1.00656 1.02151 1.17661 0.89820 1.25852 0.98843 0.98189 1.01156 1.70107 1.35447 1.14872 1.37481 0.85112 0.78071 0.77664 0.78976 1.18764 1.21376 1.22072 1.19134 0.78109 0.87898 1.00396 1.22747 0.88979 0.94382 1.05787 0.88720 0.86386 0.88393 0.72741 0.86809 0.90325 0.94302 0.87715 0.93476 0.93789 0.89938 0.78444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.18 127.77 1.43 1.63 16 2 N -0.46 -6.62 3.16 -551.11 -1.74 -8.36 16 3 C 0.21 3.41 12.57 180.11 2.26 5.68 16 4 N -0.52 -14.33 10.03 -189.12 -1.90 -16.23 16 5 C 0.02 0.69 6.95 40.70 0.28 0.98 16 6 C 0.25 10.52 7.94 136.53 1.08 11.61 16 7 N -0.32 -14.85 12.25 -51.38 -0.63 -15.47 16 8 N -0.33 -16.69 12.18 -49.69 -0.60 -17.30 16 9 C 0.17 8.41 7.90 137.96 1.09 9.50 16 10 N -0.46 -19.92 3.17 -505.36 -1.60 -21.52 16 11 C 0.11 4.01 6.58 86.56 0.57 4.58 16 12 C 0.13 5.14 6.50 86.39 0.56 5.70 16 13 N -0.61 -30.90 3.01 -701.06 -2.11 -33.00 16 14 C -0.27 -14.54 9.65 84.03 0.81 -13.73 16 15 H 0.08 4.24 7.88 -2.91 -0.02 4.22 16 16 C -0.04 -2.43 5.00 84.86 0.42 -2.01 16 17 N -0.93 -54.58 11.08 21.65 0.24 -54.34 16 18 Si 0.97 44.33 29.58 68.60 2.03 46.36 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 C 0.27 14.43 5.37 85.53 0.46 14.89 16 23 C 0.02 0.50 11.51 83.45 0.96 1.46 16 24 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.26 1.46 8.06 -2.91 -0.02 1.43 16 28 H 0.11 3.69 7.46 -2.39 -0.02 3.68 16 29 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 3.73 7.93 -2.39 -0.02 3.71 16 32 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 33 H 0.04 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 4.85 6.45 -2.39 -0.02 4.83 16 35 H 0.20 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -77.67 299.91 4.73 -72.94 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.11 Total: 6.64 kcal Atomic # 6 Polarization: 30.35 SS G_CDS: 9.93 Total: 40.29 kcal Atomic # 7 Polarization: -157.88 SS G_CDS: -8.34 Total: -166.22 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -77.67 4.73 -72.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119318129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.328 kcal (2) G-P(sol) polarization free energy of solvation -77.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds