Wall clock time and date at job start Mon Mar 30 2020 20:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47052 * 2 1 4 4 C 1.36743 * 127.13681 * 272.67543 * 3 2 1 5 5 C 1.50701 * 126.34551 * 0.06074 * 4 3 2 6 6 F 1.39899 * 109.46989 * 209.99661 * 5 4 3 7 7 F 1.39892 * 109.47428 * 329.99428 * 5 4 3 8 8 N 1.30297 * 107.30828 * 180.02562 * 4 3 2 9 9 N 1.28528 * 110.05121 * 359.72895 * 8 4 3 10 10 C 1.31220 * 109.86282 * 0.45149 * 9 8 4 11 11 N 1.38569 * 126.47996 * 179.81989 * 10 9 8 12 12 C 1.46904 * 111.00125 * 289.16987 * 11 10 9 13 13 C 1.46909 * 110.99828 * 53.11840 * 11 10 9 14 14 H 1.08997 * 109.46547 * 300.00556 * 13 11 10 15 15 C 1.52997 * 109.46844 * 60.00036 * 13 11 10 16 16 C 1.50701 * 109.47009 * 180.02562 * 13 11 10 17 17 H 1.07995 * 119.99933 * 354.34781 * 16 13 11 18 18 C 1.37875 * 119.99516 * 174.35090 * 16 13 11 19 19 N 1.31518 * 119.99905 * 155.91401 * 18 16 13 20 20 Si 1.86798 * 120.00362 * 335.90975 * 18 16 13 21 21 H 1.48498 * 109.47254 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47287 * 300.00391 * 20 18 16 23 23 H 1.48509 * 109.46747 * 60.00447 * 20 18 16 24 24 H 1.08995 * 109.47026 * 300.00408 * 1 2 3 25 25 H 1.09003 * 109.47187 * 60.00122 * 1 2 3 26 26 H 1.08996 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47304 * 240.00305 * 2 1 3 28 28 H 1.09003 * 109.47187 * 119.99878 * 2 1 3 29 29 H 1.09003 * 109.47364 * 89.99994 * 5 4 3 30 30 H 1.08993 * 109.47532 * 189.41121 * 12 11 10 31 31 H 1.08996 * 109.46664 * 309.41030 * 12 11 10 32 32 H 1.09000 * 109.47046 * 69.41041 * 12 11 10 33 33 H 1.09005 * 109.46790 * 172.84729 * 15 13 11 34 34 H 1.08997 * 109.47611 * 292.85225 * 15 13 11 35 35 H 1.09006 * 109.47173 * 52.85529 * 15 13 11 36 36 H 0.97000 * 120.00071 * 354.89527 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2455 2.1765 -1.0889 5 6 2.0379 1.7955 -2.5321 6 9 2.9459 2.4948 -3.3343 7 9 2.2432 0.4202 -2.6855 8 7 2.6740 3.3251 -0.6475 9 7 2.7272 3.3116 0.6367 10 6 2.3414 2.1409 1.0866 11 7 2.2698 1.7514 2.4145 12 6 3.6123 1.5840 2.9872 13 6 1.4772 2.7059 3.2011 14 1 1.9403 3.6913 3.1502 15 6 0.0580 2.7795 2.6342 16 6 1.4224 2.2505 4.6366 17 1 1.8471 1.2982 4.9175 18 6 0.8299 3.0498 5.5911 19 7 0.3529 2.5140 6.6935 20 14 0.7047 4.8936 5.3189 21 1 0.0316 5.5215 6.4841 22 1 2.0669 5.4652 5.1675 23 1 -0.0834 5.1598 4.0886 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.0203 2.0466 -2.8315 30 1 3.5327 1.1205 3.9704 31 1 4.2095 0.9487 2.3332 32 1 4.0906 2.5588 3.0827 33 1 -0.5643 3.3878 3.2906 34 1 0.0861 3.2283 1.6413 35 1 -0.3589 1.7746 2.5670 36 1 0.3507 1.5502 6.8027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121698578.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:15 Heat of formation + Delta-G solvation = -6.927321 kcal Electronic energy + Delta-G solvation = -22415.267448 eV Core-core repulsion = 18800.442077 eV Total energy + Delta-G solvation = -3614.825371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.37079 -47.38613 -42.87398 -37.37292 -35.63128 -33.02456 -31.05097 -30.65565 -29.87246 -26.88544 -25.30910 -24.46517 -23.95330 -21.95640 -21.10011 -19.60928 -17.98636 -17.60440 -17.56193 -17.23508 -16.43746 -16.07682 -15.41925 -14.63142 -14.46755 -14.15170 -13.63421 -13.60533 -13.49170 -13.31280 -13.02785 -12.56289 -12.50467 -12.09719 -12.00151 -11.79444 -11.54976 -11.25359 -11.10862 -10.83442 -10.58753 -10.50342 -10.23939 -10.10132 -9.91491 -9.12442 -8.97323 -8.45519 -7.97741 -6.60727 -4.18856 1.64800 2.18401 2.87728 3.25461 3.37114 3.43982 3.58764 3.71321 4.17495 4.28065 4.42449 4.49744 4.67733 4.89216 5.09096 5.14314 5.33305 5.42140 5.52609 5.58904 5.85392 5.97351 6.07670 6.10986 6.25343 6.36718 6.41888 6.54232 6.65827 6.81683 7.09830 7.47044 7.55891 8.09744 8.28625 8.76187 8.81872 9.45111 10.78475 Molecular weight = 274.13amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.005648 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.657145 B = 4956.029264 C = 5262.183401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.450 5.450 4 C 0.068 3.932 5 C 0.380 3.620 6 F -0.177 7.177 7 F -0.194 7.194 8 N -0.244 5.244 9 N -0.314 5.314 10 C 0.397 3.603 11 N -0.464 5.464 12 C 0.052 3.948 13 C 0.204 3.796 14 H 0.015 0.985 15 C -0.140 4.140 16 C -0.605 4.605 17 H 0.069 0.931 18 C 0.046 3.954 19 N -0.890 5.890 20 Si 1.028 2.972 21 H -0.283 1.283 22 H -0.280 1.280 23 H -0.278 1.278 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.050 0.950 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -5.949 -16.215 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.143 5.143 4 C -0.200 4.200 5 C 0.323 3.677 6 F -0.158 7.158 7 F -0.175 7.175 8 N -0.087 5.087 9 N -0.159 5.159 10 C 0.041 3.959 11 N -0.191 5.191 12 C -0.095 4.095 13 C 0.099 3.901 14 H 0.033 0.967 15 C -0.198 4.198 16 C -0.643 4.643 17 H 0.087 0.913 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.856 3.144 21 H -0.208 1.208 22 H -0.206 1.206 23 H -0.204 1.204 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.155 0.845 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.369 -3.641 -15.457 15.884 hybrid contribution 0.439 -2.170 -0.753 2.339 sum 0.809 -5.811 -16.210 17.239 Atomic orbital electron populations 1.22150 0.93555 1.03458 1.03398 1.22120 0.96276 0.78452 1.05714 1.46376 1.48604 1.13954 1.05409 1.24834 1.11656 0.91919 0.91571 1.19215 0.93668 0.72896 0.81883 1.93067 1.70571 1.78554 1.73575 1.92961 1.96475 1.32259 1.95803 1.73986 1.13897 1.16572 1.04250 1.74811 1.21478 1.17720 1.01901 1.23082 0.96324 0.86558 0.89904 1.59224 1.16344 1.49564 0.93929 1.22220 0.85989 1.00753 1.00535 1.19740 0.88620 0.89088 0.92702 0.96732 1.22177 0.99230 1.00662 0.97757 1.21790 1.44118 1.07806 0.90575 0.91315 1.25569 0.91992 1.05570 0.93046 1.70865 1.38047 1.14328 1.28942 0.84245 0.77547 0.76411 0.76243 1.20812 1.20610 1.20373 0.90635 0.92564 0.90174 0.88097 0.87575 0.84510 0.88809 0.93596 0.94255 0.91969 0.96503 0.93123 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 37.16 0.38 -1.42 16 2 C 0.10 1.16 6.59 -4.04 -0.03 1.13 16 3 N -0.45 -7.12 2.81 -114.08 -0.32 -7.44 16 4 C 0.07 1.06 7.67 -154.01 -1.18 -0.12 16 5 C 0.38 4.17 5.78 36.01 0.21 4.38 16 6 F -0.18 -2.22 17.28 2.25 0.04 -2.18 16 7 F -0.19 -2.02 14.81 2.25 0.03 -1.99 16 8 N -0.24 -4.68 12.12 32.99 0.40 -4.28 16 9 N -0.31 -6.68 11.97 30.31 0.36 -6.32 16 10 C 0.40 7.72 5.20 -318.88 -1.66 6.06 16 11 N -0.46 -9.52 4.66 -176.08 -0.82 -10.34 16 12 C 0.05 0.99 9.11 60.07 0.55 1.54 16 13 C 0.20 4.80 1.55 -68.86 -0.11 4.69 16 14 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 15 C -0.14 -3.11 8.65 37.16 0.32 -2.79 16 16 C -0.61 -15.89 8.06 -34.44 -0.28 -16.16 16 17 H 0.07 1.90 6.88 -52.49 -0.36 1.54 16 18 C 0.05 1.26 5.17 -17.82 -0.09 1.17 16 19 N -0.89 -25.85 13.70 55.43 0.76 -25.09 16 20 Si 1.03 24.74 26.47 -169.99 -4.50 20.24 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.38 6.23 56.52 0.35 -6.02 16 24 H 0.07 1.03 7.00 -51.93 -0.36 0.66 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 0.99 5.89 -51.93 -0.31 0.69 16 28 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.14 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.82 6.55 -51.93 -0.34 1.48 16 31 H 0.05 0.75 8.06 -51.93 -0.42 0.34 16 32 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.06 1.43 5.58 -51.93 -0.29 1.14 16 34 H 0.02 0.35 7.48 -51.93 -0.39 -0.04 16 35 H 0.05 1.07 7.00 -51.93 -0.36 0.71 16 36 H 0.27 7.80 8.73 -40.82 -0.36 7.45 16 LS Contribution 302.71 15.07 4.56 4.56 Total: -1.00 -30.95 302.71 -5.86 -36.81 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.49 Total: -2.44 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.88 Total: -1.53 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.38 Total: -53.47 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.07 Total: -4.17 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -4.50 Total: 20.24 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.95 -5.86 -36.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121698578.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.882 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds